Chunquan Li

30 papers Journal 25Unranked 5
YearRankTypeTitle / Venue / Authors
2025 J jnl
FunlncModel: integrating multi-omic features from upstream and downstream regulatory networks into a machine learning framework to identify functional lncRNAs.
Briefings Bioinform.
Yan-Yu Li, Fengcui Qian, Guorui Zhang, Xue-Cang Li, Li-Wei Zhou, Zhengmin Yu, Wei Liu, Qiu-Yu Wang, Chunquan Li
2024 — conf
ChiMamba: Predicting Chromatin Interactions Based on Mamba.
ICIC (LNBI 2)
Jianing Zhang, Chao Song, Ting Cui, Chunquan Li, Jiquan Ma
2024 — conf
PEGCN: A Single-Cell Type Annotation model based on GCN with Pseudo Labels and Ensemble Learning.
BIBM
Chi Zhu, Fengcui Qian, Yongbin Liu, Ying Yu, Chunquan Li, Chunping Ouyang
2024 J jnl
Uncertainty-driven and Adversarial Calibration Learning for Epicardial Adipose Tissue Segmentation.
CoRR
Kai Zhao, Zhiming Liu, Jiaqi Liu, Jingbiao Zhou, Bihong Liao, Huifang Tang, Qiuyu Wang, Chunquan Li
2023 J jnl
CRdb: a comprehensive resource for deciphering chromatin regulators in human.
Nucleic Acids Res.
Yimeng Zhang, Yuexin Zhang, Chao Song, Xilong Zhao, Bo Ai, Yuezhu Wang, Liwei Zhou, Jiang Zhu, Chenchen Feng, Liyan Xu, Qiuyu Wang, Hong Sun, Qiaoli Fang, Xiaozheng Xu, Enmin Li, Chunquan Li
2023 J jnl
CanMethdb: a database for genome-wide DNA methylation annotation in cancers.
Bioinform.
Jianmei Zhao, Fengcui Qian, Xuecang Li, Zhengmin Yu, Jiang Zhu, Rui Yu, Yue Zhao, Ke Ding, Yanyu Li, Yongsan Yang, Qi Pan, Jiaxin Chen, Chao Song, Qiuyu Wang, Jian Zhang, Guohua Wang, Chunquan Li
2023 — conf
MGCT: Mutual-Guided Cross-Modality Transformer for Survival Outcome Prediction using Integrative Histopathology-Genomic Features.
BIBM
Mingxin Liu, Yunzan Liu, Hui Cui, Chunquan Li, Jiquan Ma
2023 J jnl
MGCT: Mutual-Guided Cross-Modality Transformer for Survival Outcome Prediction using Integrative Histopathology-Genomic Features.
CoRR
Mingxin Liu, Yunzan Liu, Hui Cui, Chunquan Li, Jiquan Ma
2023 J jnl
SENIES: DNA Shape Enhanced Two-Layer Deep Learning Predictor for the Identification of Enhancers and Their Strength.
IEEE ACM Trans. Comput. Biol. Bioinform.
Ye Li, Fanhui Kong, Hui Cui, Fan Wang, Chunquan Li, Jiquan Ma
2023 J jnl
SEanalysis 2.0: a comprehensive super-enhancer regulatory network analysis tool for human and mouse.
Nucleic Acids Res.
Fengcui Qian, Li-Wei Zhou, Yanyu Li, Zhengmin Yu, Li-Dong Li, Yuezhu Wang, Mingcong Xu, Qiuyu Wang, Chunquan Li
2023 J jnl
SEdb 2.0: a comprehensive super-enhancer database of human and mouse.
Nucleic Acids Res.
Yuezhu Wang, Chao Song, Jun Zhao, Yuexin Zhang, Xilong Zhao, Chenchen Feng, Guorui Zhang, Jiang Zhu, Fan Wang, Fengcui Qian, Liwei Zhou, Jian Zhang, Xuefeng Bai, Bo Ai, Xinyu Liu, Qiuyu Wang, Chunquan Li
2022 J jnl
GREAP: a comprehensive enrichment analysis software for human genomic regions.
Briefings Bioinform.
Yongsan Yang, Fengcui Qian, Xuecang Li, Yanyu Li, Liwei Zhou, Qiuyu Wang, Xinyuan Zhou, Jian Zhang, Chao Song, Zhengmin Yu, Ting Cui, Chenchen Feng, Jiang Zhu, Desi Shang, Jiaqi Liu, Mengfei Sun, Yuexin Zhang, Huifang Tang, Chunquan Li
2022 J jnl
TcoFBase: a comprehensive database for decoding the regulatory transcription co-factors in human and mouse.
Nucleic Acids Res.
Yuexin Zhang, Chao Song, Yimeng Zhang, Yuezhu Wang, Chenchen Feng, Jiaxin Chen, Ling Wei, Qi Pan, Desi Shang, Yanbing Zhu, Jiang Zhu, Shuangsang Fang, Jun Zhao, Yongsan Yang, Xilong Zhao, Xiaozheng Xu, Qiuyu Wang, Jincheng Guo, Chunquan Li
2021 J jnl
ATACdb: a comprehensive human chromatin accessibility database.
Nucleic Acids Res.
Fan Wang, Xuefeng Bai, Yuezhu Wang, Yong Jiang, Bo Ai, Yong Zhang, Yuejuan Liu, Mingcong Xu, Qiuyu Wang, Xiaole Han, Qi Pan, Yanyu Li, Xuecang Li, Jian Zhang, Jun Zhao, Guorui Zhang, Chenchen Feng, Jiang Zhu, Chunquan Li
2021 — conf
ComPAT: A Comprehensive Pathway Analysis Tools.
ICIC (3)
Xiaojie Su, Chao Song, Chenchen Feng, Yu Gao, Ziyu Ning, Qiuyu Wang, Jiaxin Chen, Yuexin Zhang, Ling Wei, Xinyuan Zhou, Chunquan Li
2021 J jnl
LncSEA: a platform for long non-coding RNA related sets and enrichment analysis.
Nucleic Acids Res.
Jiaxin Chen, Jian Zhang, Yu Gao, Yanyu Li, Chenchen Feng, Chao Song, Ziyu Ning, Xinyuan Zhou, Jianmei Zhao, Minghong Feng, Yuexin Zhang, Ling Wei, Qi Pan, Yong Jiang, Fengcui Qian, Junwei Han, Yongsan Yang, Qiuyu Wang, Chunquan Li
2021 J jnl
TRlnc: a comprehensive database for human transcriptional regulatory information of lncRNAs.
Briefings Bioinform.
Yanyu Li, Xuecang Li, Yongsan Yang, Meng Li, Fengcui Qian, Zhidong Tang, Jianmei Zhao, Jian Zhang, Xuefeng Bai, Yong Jiang, Jianyuan Zhou, Yuexin Zhang, Liwei Zhou, Jianjun Xie, Enmin Li, Qiuyu Wang, Chunquan Li
2021 J jnl
VARAdb: a comprehensive variation annotation database for human.
Nucleic Acids Res.
Qi Pan, Yuejuan Liu, Xuefeng Bai, Xiaole Han, Yong Jiang, Bo Ai, Shanshan Shi, Fan Wang, Mingcong Xu, Yuezhu Wang, Jun Zhao, Jiaxin Chen, Jian Zhang, Xuecang Li, Jiang Zhu, Guorui Zhang, Qiuyu Wang, Chunquan Li
2020 J jnl
ENdb: a manually curated database of experimentally supported enhancers for human and mouse.
Nucleic Acids Res.
Xuefeng Bai, Shanshan Shi, Bo Ai, Yong Jiang, Yuejuan Liu, Xiaole Han, Mingcong Xu, Qi Pan, Fan Wang, Qiuyu Wang, Jian Zhang, Xuecang Li, Chenchen Feng, Yanyu Li, Yuezhu Wang, Yiwei Song, Ke Feng, Chunquan Li
2020 J jnl
HiFreSP: A novel high-frequency sub-pathway mining approach to identify robust prognostic gene signatures.
Briefings Bioinform.
Meng Li, Jianmei Zhao, Xuecang Li, Yang Chen, Chenchen Feng, Fengcui Qian, Yuejuan Liu, Jian Zhang, Jianzhong He, Bo Ai, Ziyu Ning, Wei Liu, Xuefeng Bai, Xiaole Han, Zhiyong Wu, Xiue Xu, Zhidong Tang, Qi Pan, Liyan Xu, Chunquan Li, Qiuyu Wang, Enmin Li
2020 J jnl
KnockTF: a comprehensive human gene expression profile database with knockdown/knockout of transcription factors.
Nucleic Acids Res.
Chenchen Feng, Chao Song, Yuejuan Liu, Fengcui Qian, Yu Gao, Ziyu Ning, Qiuyu Wang, Yong Jiang, Yanyu Li, Meng Li, Jiaxin Chen, Jian Zhang, Chunquan Li
2019 J jnl
SEanalysis: a web tool for super-enhancer associated regulatory analysis.
Nucleic Acids Res.
Fengcui Qian, Xuecang Li, Jincheng Guo, Jianmei Zhao, Yanyu Li, Zhidong Tang, Liwei Zhou, Jian Zhang, Xuefeng Bai, Yong Jiang, Qi Pan, Qiuyu Wang, Enmin Li, Chunquan Li, Liyan Xu, Dechen Lin
2019 J jnl
SEdb: a comprehensive human super-enhancer database.
Nucleic Acids Res.
Yong Jiang, Fengcui Qian, Xuefeng Bai, Yuejuan Liu, Qiuyu Wang, Bo Ai, Xiaole Han, Shanshan Shi, Jian Zhang, Xuecang Li, Zhidong Tang, Qi Pan, Yuezhu Wang, Fan Wang, Chunquan Li
2019 J jnl
TRCirc: a resource for transcriptional regulation information of circRNAs.
Briefings Bioinform.
Zhidong Tang, Xuecang Li, Jianmei Zhao, Fengcui Qian, Chenchen Feng, Yanyu Li, Jian Zhang, Yong Jiang, Yongsan Yang, Qiuyu Wang, Chunquan Li
2015 J jnl
Characterizing and optimizing human anticancer drug targets based on topological properties in the context of biological pathways.
J. Biomed. Informatics
Jian Zhang, Yan Wang, Desi Shang, Fulong Yu, Wei Liu, Yan Zhang, Chenchen Feng, Qiuyu Wang, Yanjun Xu, Yuejuan Liu, Xuefeng Bai, Xuecang Li, Chunquan Li
2014 J jnl
The detection of risk pathways, regulated by miRNAs, via the integration of sample-matched miRNA-mRNA profiles and pathway structure.
J. Biomed. Informatics
Jing Li, Chunquan Li, Junwei Han, Chunlong Zhang, Desi Shang, Qianlan Yao, Yunpeng Zhang, Yanjun Xu, Wei Liu, Meng Zhou, Haixiu Yang, Fei Su, Xia Li
2013 J jnl
Topologically inferring risk-active pathways toward precise cancer classification by directed random walk.
Bioinform.
Wei Liu, Chunquan Li, Yanjun Xu, Haixiu Yang, Qianlan Yao, Junwei Han, Desi Shang, Chunlong Zhang, Fei Su, Xiaoxi Li, Yun Xiao, Fan Zhang, Meng Dai, Xia Li
2013 J jnl
Walking the interactome to identify human miRNA-disease associations through the functional link between miRNA targets and disease genes.
BMC Syst. Biol.
Hongbo Shi, Juan Xu, Guangde Zhang, Liangde Xu, Chunquan Li, Li Wang, Zheng Zhao, Wei Jiang, Zheng Guo, Xia Li
2011 J jnl
DOSim: An R package for similarity between diseases based on Disease Ontology.
BMC Bioinform.
Jiang Li, Bingsheng Gong, Xi Chen, Tao Liu, Chao Wu, Fan Zhang, Chunquan Li, Xiang Li, Shaoqi Rao, Xia Li
2007 — conf
A Heuristic Approach for Target SNP Mining Based on Genome-Wide IBD Profile.
ICNC (5)
Fan Zhang, Xia Li, Ivan Viktorovich Krivosheev, Binsheng Gong, Lei Du, Chunquan Li