Chunhua Li

14 papers Journal 14
YearRankTypeTitle / Venue / Authors
2025 J jnl
Allosteric Cooperativity Mechanism Investigation of Orthosteric and Allosteric Ligands in Modulating AR Activity: A Molecular Dynamics Study.
J. Chem. Inf. Model.
Xiaotian Kong, Yushan Zou, Peng Cao, Yuxuan Dong, Keran Li, Xi Zhang, Yubo Liu, Sijin Wu, Sheng Tian, Chunhua Li, Tingjun Hou
2024 J jnl
ESPDHot: An Effective Machine Learning-Based Approach for Predicting Protein-DNA Interaction Hotspots.
J. Chem. Inf. Model.
Lianci Tao, Tong Zhou, Zhixiang Wu, Fangrui Hu, Shuang Yang, Xiaotian Kong, Chunhua Li
2024 J jnl
Prediction of Protein Allosteric Sites with Transfer Entropy and Spatial Neighbor-Based Evolutionary Information Learned by an Ensemble Model.
J. Chem. Inf. Model.
Fangrui Hu, Fubin Chang, Lianci Tao, Xiaohan Sun, Lamei Liu, Yingchun Zhao, Zhongjie Han, Chunhua Li
2024 J jnl
RNAfcg: RNA Flexibility Prediction Based on Topological Centrality and Global Features.
J. Chem. Inf. Model.
Fubin Chang, Lamei Liu, Fangrui Hu, Xiaohan Sun, Yingchun Zhao, Na Zhang, Chunhua Li
2023 J jnl
Dynamic Insights into the Self-Activation Pathway and Allosteric Regulation of the Orphan G-Protein-Coupled Receptor GPR52.
J. Chem. Inf. Model.
Zhixiang Wu, Zhongjie Han, Lianci Tao, Xiaohan Sun, Jingjie Su, Jianping Hu, Chunhua Li
2023 J jnl
Identification of metal ion-binding sites in RNA structures using deep learning method.
Briefings Bioinform.
Yanpeng Zhao, Jingjing Wang, Fubin Chang, Weikang Gong, Yang Liu, Chunhua Li
2023 J jnl
emPDBA: protein-DNA binding affinity prediction by combining features from binding partners and interface learned with ensemble regression model.
Briefings Bioinform.
Shuang Yang, Weikang Gong, Tong Zhou, Xiaohan Sun, Lei Chen, Wenxue Zhou, Chunhua Li
2022 J jnl
An ensemble approach to predict binding hotspots in protein-RNA interactions based on SMOTE data balancing and Random Grouping feature selection strategies.
Bioinform.
Tong Zhou, Jie Rong, Yang Liu, Weikang Gong, Chunhua Li
2022 J jnl
Key Residues in δ Opioid Receptor Allostery Explored by the Elastic Network Model and the Complex Network Model Combined with the Perturbation Method.
J. Chem. Inf. Model.
Lei Chen, Weikang Gong, Zhongjie Han, Wenxue Zhou, Shuang Yang, Chunhua Li
2022 J jnl
Persistent spectral simplicial complex-based machine learning for chromosomal structural analysis in cellular differentiation.
Briefings Bioinform.
Weikang Gong, Junjie Wee, Min-Chun Wu, Xiaohan Sun, Chunhua Li, Kelin Xia
2021 J jnl
Equally Weighted Multiscale Elastic Network Model and Its Comparison with Traditional and Parameter-Free Models.
J. Chem. Inf. Model.
Weikang Gong, Yang Liu, Yanpeng Zhao, Shihao Wang, Zhongjie Han, Chunhua Li
2021 J jnl
aPRBind: protein-RNA interface prediction by combining sequence and I-TASSER model-based structural features learned with convolutional neural networks.
Bioinform.
Yang Liu, Weikang Gong, Yanpeng Zhao, Xueqing Deng, Shan Zhang, Chunhua Li
2020 J jnl
Analyses on clustering of the conserved residues at protein-RNA interfaces and its application in binding site identification.
BMC Bioinform.
Zhen Yang, Xueqing Deng, Yang Liu, Weikang Gong, Chunhua Li
2019 J jnl
DM-RPIs: Predicting ncRNA-protein interactions using stacked ensembling strategy.
Comput. Biol. Chem.
Shuping Cheng, Lu Zhang, Jianjun Tan, Weikang Gong, Chunhua Li, Xiaoyi Zhang