Chungong Yu

11 papers A* 1B 1Journal 9
YearRankTypeTitle / Venue / Authors
2026 J jnl
Designing faster mixed integer linear programming algorithm via learning the optimal path.
CoRR
Ruizhi Liu, Liming Xu, Xulin Huang, Jingyan Sui, Shizhe Ding, Boyang Xia, Chungong Yu, Dongbo Bu
2025 J jnl
A survey on deep learning-based algorithms for the traveling salesman problem.
Frontiers Comput. Sci.
Jingyan Sui, Shizhe Ding, Xulin Huang, Yue Yu, Ruizhi Liu, Boyang Xia, Zhenxin Ding, Liming Xu, Haicang Zhang, Chungong Yu, Dongbo Bu
2024 J jnl
Accurate and robust protein sequence design with CarbonDesign.
Nat. Mac. Intell.
Milong Ren, Chungong Yu, Dongbo Bu, Haicang Zhang
2024 J jnl
GPCR-BSD: a database of binding sites of human G-protein coupled receptors under diverse states.
BMC Bioinform.
Fan Liu, Han Zhou, Xiaonong Li, Liangliang Zhou, Chungong Yu, Haicang Zhang, Dongbo Bu, Xinmiao Liang
2023 J jnl
Accurate and efficient protein sequence design through learning concise local environment of residues.
Bioinform.
Bin Huang, Tingwen Fan, Kaiyue Wang, Haicang Zhang, Chungong Yu, Shuyu Nie, Yangshuo Qi, Wei-Mou Zheng, Jian Han, Zheng Fan, Shiwei Sun, Sheng Ye, Huaiyi Yang, Dongbo Bu
2023 A* conf
Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model.
NeurIPS
Shiwei Liu, Tian Zhu, Milong Ren, Chungong Yu, Dongbo Bu, Haicang Zhang
2023 J jnl
Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model.
CoRR
Shiwei Liu, Tian Zhu, Milong Ren, Chungong Yu, Dongbo Bu, Haicang Zhang
2023 J jnl
Protein Structure Prediction: Challenges, Advances, and the Shift of Research Paradigms.
Genom. Proteom. Bioinform.
Bin Huang, Lupeng Kong, Chao Wang, Fusong Ju, Qi Zhang, Jianwei Zhu, Tiansu Gong, Haicang Zhang, Chungong Yu, Wei-Mou Zheng, Dongbo Bu
2008 B conf
A Fragmentation Event Model for Peptide Identification by Mass Spectrometry.
RECOMB
Yu Lin, Yantao Qiao, Shiwei Sun, Chungong Yu, Gongjin Dong, Dongbo Bu
2007 J jnl
An Iterative Algorithm to Quantify Factors Influencing peptide Fragmentation during Tandem Mass Spectrometry.
J. Bioinform. Comput. Biol.
Chungong Yu, Yu Lin, Shiwei Sun, Jinjin Cai, Jingfen Zhang, Dongbo Bu, Zhuo Zhang, Runsheng Chen
2006 J jnl
A novel scoring schema for peptide identification by searching protein sequence databases using tandem mass spectrometry data.
BMC Bioinform.
Zhuo Zhang, Shiwei Sun, Xiaopeng Zhu, Suhua Chang, Xiaofei Liu, Chungong Yu, Dongbo Bu, Runsheng Chen