Christos A. Ouzounis

61 papers A 5C 1Misc 1Journal 47Unranked 7
YearRankTypeTitle / Venue / Authors
2026 J jnl
Asymmetric divergence of genome organization and transcription beyond LUCA.
Biosyst.
Christos A. Ouzounis, Nikos Kyrpides
2024 J jnl
The Net of Life, a short story: Intricate patterns of gene flows across hundreds of extant genomes, all the way to LUCA.
Biosyst.
Christos A. Ouzounis
2023 — conf
Bio-Electrical Nanonetworks: A New Paradigm of Biological Nanocommunication based on Living Cable Bacteria Filaments.
NANOCOM
Konstantinos F. Kantelis, Vassilios Asteriou, Aliki Papadimitriou, Anthi Petrou, Christos A. Ouzounis, Lefteris Angelis, Ioannis S. Vizirianakis, Petros Nicopolitidis, Georgios I. Papadimitriou
2023 J jnl
CGG toolkit: Software components for computational genomics.
PLoS Comput. Biol.
Dimitrios Vasileiou, Christos Karapiperis, Ismini Baltsavia, Anastasia Chasapi, Dag G. Ahrén, Paul J. Janssen, Ioannis Iliopoulos, Vasilis J. Promponas, Anton J. Enright, Christos A. Ouzounis
2022 J jnl
DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation.
Nucleic Acids Res.
Federica Quaglia, Bálint Mészáros, Edoardo Salladini, András Hatos, Rita Pancsa, Lucía B. Chemes, Mátyás Pajkos, Tamas Lazar, Samuel Peña-Díaz, Jaime Santos, Veronika Ács, Nazanin Farahi, Erzsébet Fichó, Maria Cristina Aspromonte, Claudio Bassot, Anastasia Chasapi, Norman E. Davey, Radoslav Davidovic, Laszlo Dobson, Arne Elofsson, Gábor Erdös, Pascale Gaudet, Michelle G. Giglio, Juliana Glavina, Javier Iserte, Valentín Iglesias, Zsófia L. Kálmán, Matteo Lambrughi, Emanuela Leonardi, Sonia Longhi, Sandra Macedo-Ribeiro, Emiliano Maiani, Julia Marchetti, Cristina Marino Buslje, Attila Meszaros, Alexander Miguel Monzon, Giovanni Minervini, Suvarna Nadendla, Juliet F. Nilsson, Marián Novotný, Christos A. Ouzounis, Nicolas Palopoli, Elena Papaleo, Pedro J. Barbosa Pereira, Gabriele Pozzati, Vasilis J. Promponas, Jordi Pujols, Alma Carolina Sanchez Rocha, Martin Salas, Luciana Rodriguez Sawicki, Éva Schád, Aditi Shenoy, Tamás Szaniszló, Konstantinos D. Tsirigos, Nevena Veljkovic, Gustavo D. Parisi, Salvador Ventura, Zsuzsanna Dosztányi, Peter Tompa, Silvio C. E. Tosatto, Damiano Piovesan
2021 J jnl
The Coming of Age for Big Data in Systems Radiobiology, an Engineering Perspective.
Big Data
Christos Karapiperis, Anastasia Chasapi, Lefteris Angelis, Zacharias G. Scouras, Pier G. Mastroberardino, Soile Tapio, Michael Atkinson, Christos A. Ouzounis
2020 J jnl
DisProt: intrinsic protein disorder annotation in 2020.
Nucleic Acids Res.
András Hatos, Borbála Hajdu-Soltész, Alexander Miguel Monzon, Nicolas Palopoli, Lucía Álvarez, Burcu Aykaç Fas, Claudio Bassot, Guillermo I. Benítez, Martina Bevilacqua, Anastasia Chasapi, Lucía B. Chemes, Norman E. Davey, Radoslav Davidovic, A. Keith Dunker, Arne Elofsson, Julien Gobeill, Nicolás S. González Foutel, Govindarajan Sudha, Mainak Guharoy, Tamás Horváth, Valentin Iglesias, Andrey V. Kajava, Orsolya P. Kovács, John Lamb, Matteo Lambrughi, Tamas Lazar, Jeremy Y. Leclercq, Emanuela Leonardi, Sandra Macedo-Ribeiro, Mauricio Macossay-Castillo, Emiliano Maiani, José A. Manso, Cristina Marino Buslje, Elizabeth Martínez-Pérez, Bálint Mészáros, Ivan Micetic, Giovanni Minervini, Nikoletta Murvai, Marco Necci, Christos A. Ouzounis, Mátyás Pajkos, Lisanna Paladin, Rita Pancsa, Elena Papaleo, Gustavo D. Parisi, Emilie Pasche, Pedro J. Barbosa Pereira, Vasilis J. Promponas, Jordi Pujols, Federica Quaglia, Patrick Ruch, Marco Salvatore, Éva Schád, Beáta Szabó, Tamás Szaniszló, Stella Tamana, Ágnes Tantos, Nevena Veljkovic, Salvador Ventura, Wim F. Vranken, Zsuzsanna Dosztányi, Peter Tompa, Silvio C. E. Tosatto, Damiano Piovesan
2020 J jnl
Disentangling the complexity of low complexity proteins.
Briefings Bioinform.
Pablo Mier, Lisanna Paladin, Stella Tamana, Sophia Petrosian, Borbála Hajdu-Soltész, Annika Urbanek, Aleksandra Gruca, Dariusz Plewczynski, Marcin Grynberg, Pau Bernadó, Zoltán Gáspári, Christos A. Ouzounis, Vasilis J. Promponas, Andrey V. Kajava, John M. Hancock, Silvio C. E. Tosatto, Zsuzsanna Dosztányi, Miguel A. Andrade-Navarro
2020 J jnl
The bioinformatics wealth of nations.
Bioinform.
Anastasia Chasapi, Vasilis J. Promponas, Christos A. Ouzounis
2019 J jnl
Establishment of computational biology in Greece and Cyprus: Past, present, and future.
PLoS Comput. Biol.
Anastasia Chasapi, Michalis Aivaliotis, Lefteris Angelis, Anastasios Chanalaris, Ioannis Iliopoulos, Ilias Kappas, Christos Karapiperis, Nikos Kyrpides, Evangelos Pafilis, Eleftherios Panteris, Pantelis Topalis, George Tsiamis, Ioannis S. Vizirianakis, Metaxia Vlassi, Vasilis J. Promponas, Christos A. Ouzounis
2017 J jnl
BioPAXViz: a cytoscape application for the visual exploration of metabolic pathway evolution.
Bioinform.
Fotis E. Psomopoulos, Dimitrios M. Vitsios, Shakuntala Baichoo, Christos A. Ouzounis
2017 J jnl
Computational complexity of algorithms for sequence comparison, short-read assembly and genome alignment.
Biosyst.
Shakuntala Baichoo, Christos A. Ouzounis
2017 — conf
Kernel Projection of Latent Structures Regression for Facial Animation Retargeting.
VRIPHYS
Christos A. Ouzounis, Alex Kilias, Christos Mousas
2017 J jnl
Kernel Projection of Latent Structures Regression for Facial Animation Retargeting.
CoRR
Christos A. Ouzounis, Alex Kilias, Christos Mousas
2016 J jnl
Brain Radiation Information Data Exchange (BRIDE): integration of experimental data from low-dose ionising radiation research for pathway discovery.
BMC Bioinform.
Christos Karapiperis, Stefan J. Kempf, Roel Quintens, Omid Azimzadeh, Victoria Linares Vidal, Simonetta Pazzaglia, Dimitry Bazyka, Pier G. Mastroberardino, Zacharias G. Scouras, Soile Tapio, Mohammed Abderrafi Benotmane, Christos A. Ouzounis
2015 J jnl
BioTextQuest+: a knowledge integration platform for literature mining and concept discovery.
Bioinform.
Nikolas Papanikolaou, Georgios A. Pavlopoulos, Evangelos Pafilis, Theodosios Theodosiou, Reinhard Schneider, Venkata P. Satagopam, Christos A. Ouzounis, Aristides G. Eliopoulos, Vasilis J. Promponas, Ioannis Iliopoulos
2015 J jnl
Inference of Pathway Decomposition Across Multiple Species Through Gene Clustering.
Int. J. Artif. Intell. Tools
Dimitrios M. Vitsios, Fotis E. Psomopoulos, Pericles A. Mitkas, Christos A. Ouzounis
2015 — conf
Using Personalized Finger Gestures for Navigating Virtual Characters.
VRIPHYS
Christos A. Ouzounis, Christos Mousas, Christos-Nikolaos Anagnostopoulos, Paul Newbury
2014 J jnl
BioTextQuest
Bioinform.
Nikolas Papanikolaou, Georgios A. Pavlopoulos, Evangelos Pafilis, Theodosios Theodosiou, Reinhard Schneider, Venkata P. Satagopam, Christos A. Ouzounis, Aristides G. Eliopoulos, Vasilis J. Promponas, Ioannis Iliopoulos
2014 J jnl
Experimental evidence validating the computational inference of functional associations from gene fusion events: a critical survey.
Briefings Bioinform.
Vasilis J. Promponas, Christos A. Ouzounis, Ioannis Iliopoulos
2012 C conf
Keynote lectures.
BIBE
Metin Akay, Yuan-Ting Zhang, Konstantina S. Nikita, Miguel A. Andrade, Christos A. Ouzounis
2012 — conf
Multi-genome Core Pathway Identification through Gene Clustering.
AIAI (2)
Dimitrios M. Vitsios, Fotis E. Psomopoulos, Pericles A. Mitkas, Christos A. Ouzounis
2012 J jnl
Rise and Demise of Bioinformatics? Promise and Progress.
PLoS Comput. Biol.
Christos A. Ouzounis
2011 J jnl
BioTextQuest: a web-based biomedical text mining suite for concept discovery.
Bioinform.
Nikolas Papanikolaou, Evangelos Pafilis, Stavros Nikolaou, Christos A. Ouzounis, Ioannis Iliopoulos, Vasilis J. Promponas
2010 J jnl
A Systems Model for Immune Cell Interactions Unravels the Mechanism of Inflammation in Human Skin.
PLoS Comput. Biol.
Najl V. Valeyev, Christian Hundhausen, Yoshinori Umezawa, Nikolai V. Kotov, Gareth Williams, Alex Clop, Crysanthi Ainali, Christos A. Ouzounis, Sophia Tsoka, Frank O. Nestle
2010 J jnl
Promoter Complexity and Tissue-Specific Expression of Stress Response Components in
PLoS Comput. Biol.
Chrysa Pantzartzi, Elena Drosopoulou, Minas Yiangou, Ignat Drozdov, Sophia Tsoka, Christos A. Ouzounis, Zacharias G. Scouras
2009 J jnl
Stratification of co-evolving genomic groups using ranked phylogenetic profiles.
BMC Bioinform.
Shiri Freilich, Leon Goldovsky, Assaf Gottlieb, Eric Blanc, Sophia Tsoka, Christos A. Ouzounis
2008 J jnl
PuReD-MCL: a graph-based PubMed document clustering methodology.
Bioinform.
Theodosios Theodosiou, Nikos Darzentas, Lefteris Angelis, Christos A. Ouzounis
2007 J jnl
CORRIE: enzyme sequence annotation with confidence estimates.
BMC Bioinform.
Benjamin Audit, Emmanuel D. Levy, Walter R. Gilks, Leon Goldovsky, Christos A. Ouzounis
2006 J jnl
Highly consistent patterns for inherited human diseases at the molecular level.
Bioinform.
Núria López-Bigas, Benjamin J. Blencowe, Christos A. Ouzounis
2005 J jnl
Clustering the annotation space of proteins.
BMC Bioinform.
Victor Kunin, Christos A. Ouzounis
2005 J jnl
CoGenT++: an extensive and extensible data environment for computational genomics.
Bioinform.
Leon Goldovsky, Paul J. Janssen, Dag G. Ahrén, Benjamin Audit, Ildefonso Cases, Nikos Darzentas, Anton J. Enright, Núria López-Bigas, José M. Peregrín-Alvarez, Mike Smith, Sophia Tsoka, Victor Kunin, Christos A. Ouzounis
2005 J jnl
MagicMatch - cross-referencing sequence identifiers across databases.
Bioinform.
Mike Smith, Victor Kunin, Leon Goldovsky, Anton J. Enright, Christos A. Ouzounis
2005 J jnl
Probabilistic annotation of protein sequences based on functional classifications.
BMC Bioinform.
Emmanuel D. Levy, Christos A. Ouzounis, Walter R. Gilks, Benjamin Audit
2005 J jnl
The properties of protein family space depend on experimental design.
Bioinform.
Victor Kunin, Sarah A. Teichmann, Martijn A. Huynen, Christos A. Ouzounis
2004 — conf
Properties of Genes involved in Human Genetic Disease.
Spanish Bioinformatics Conference
Núria López-Bigas, Christos A. Ouzounis
2004 J jnl
Robustness of Metabolic Map Reconstruction.
J. Bioinform. Comput. Biol.
Dag G. Ahrén, Christos A. Ouzounis
2003 J jnl
COmplete GENome Tracking (COGENT): A Flexible Data Environment for Computational Genomics.
Bioinform.
Paul J. Janssen, Anton J. Enright, Benjamin Audit, Ildefonso Cases, Leon Goldovsky, Nicola Harte, Victor Kunin, Christos A. Ouzounis
2003 J jnl
Comparison of sequence masking algorithms and the detection of biased protein sequence regions.
Bioinform.
David P. Kreil, Christos A. Ouzounis
2003 J jnl
Early bioinformatics: the birth of a discipline - a personal view.
Bioinform.
Christos A. Ouzounis, Alfonso Valencia
2003 J jnl
Evaluation of annotation strategies using an entire genome sequence.
Bioinform.
Ioannis Iliopoulos, Sophia Tsoka, Miguel A. Andrade, Anton J. Enright, Mark Carroll, Patrick Poullet, Vasilis J. Promponas, Theodore Liakopoulos, Giorgos Palaios, Claude Pasquier, Stavros J. Hamodrakas, Javier Tamames, Asutosh T. Yagnik, Anna Tramontano, Damien Devos, Christian Blaschke, Alfonso Valencia, David Brett, David M. A. Martin, Christophe Leroy, Isidore Rigoutsos, Chris Sander, Christos A. Ouzounis
2003 J jnl
GeneTRACE - Reconstruction of Gene Content of Ancestral Species.
Bioinform.
Victor Kunin, Christos A. Ouzounis
2003 J jnl
PseuRECA: genome annotation and gene context analysis for Pseudomonas aeruginosa PAO1.
Bioinform.
Christian Weinel, Maria D. Ermolaeva, Christos A. Ouzounis
2002 J jnl
Bioinformatics and the theoretical foundations of molecular biology.
Bioinform.
Christos A. Ouzounis
2002 J jnl
Modeling the percolation of annotation errors in a database of protein sequences.
Bioinform.
Walter R. Gilks, Benjamin Audit, Daniela De Angelis, Sophia Tsoka, Christos A. Ouzounis
2001 J jnl
BioLayout-an automatic graph layout algorithm for similarity visualization.
Bioinform.
Anton J. Enright, Christos A. Ouzounis
2001 Misc conf
TEXTQUEST: Document Clustering of MEDLINE Abstracts For Concept Discovery In Molecular Biology.
Pacific Symposium on Biocomputing
Ioannis Iliopoulos, Anton J. Enright, Christos A. Ouzounis
2001 J jnl
Transcription-associated protein families are primarily taxon-specific.
Bioinform.
Richard M. R. Coulson, Anton J. Enright, Christos A. Ouzounis
2000 — conf
A Million Annotations for the Molecular Biologist.
German Conference on Bioinformatics
Christos A. Ouzounis
2000 J jnl
CAST: an iterative algorithm for the complexity analysis of sequence tracts.
Bioinform.
Vasilis J. Promponas, Anton J. Enright, Sophia Tsoka, David P. Kreil, Christophe Leroy, Stavros J. Hamodrakas, Chris Sander, Christos A. Ouzounis
2000 J jnl
GeneRAGE: a robust algorithm for sequence clustering and domain detection.
Bioinform.
Anton J. Enright, Christos A. Ouzounis
2000 J jnl
Two or three myths about bioinformatics.
Bioinform.
Christos A. Ouzounis
1999 J jnl
Automated genome sequence analysis and annotation.
Bioinform.
Miguel A. Andrade, Nigel P. Brown, Christophe Leroy, S. Hörsch, Antoine de Daruvar, C. Reich, Angelo Franchini, Javier Tamames, Alfonso Valencia, Christos A. Ouzounis, Chris Sander
1999 A conf
Automatic Extraction of Biological Information from Scientific Text: Protein-Protein Interactions.
ISMB
Christian Blaschke, Miguel A. Andrade, Christos A. Ouzounis, Alfonso Valencia
1998 J jnl
EUCLID: automatic classification of proteins in functional classes by their database annotations.
Bioinform.
Javier Tamames, Christos A. Ouzounis, Georg Casari, Chris Sander, Alfonso Valencia
1997 A conf
Prediction of Enzyme Classification from Protein Sequence without the Use of Sequence Similarity.
ISMB
Marie desJardins, Peter D. Karp, Markus Krummenacker, Thomas J. Lee, Christos A. Ouzounis
1997 A ed.
Proceedings of the 5th International Conference on Intelligent Systems for Molecular Biology, Halkidiki, Greece, June 21-26, 1997
ISMB
Terry Gaasterland, Peter D. Karp, Kevin Karplus, Christos A. Ouzounis, Chris Sander, Alfonso Valencia
1997 J jnl
Sequence analysis of the Methanococcus jannaschii genome and the prediction of protein function.
Comput. Appl. Biosci.
Miguel A. Andrade, Georg Casari, Antoine de Daruvar, Chris Sander, Reinhard Schneider, Javier Tamames, Alfonso Valencia, Christos A. Ouzounis
1996 A conf
HinCyc: A Knowledge Base of the Complete Genome and Metabolic Pathways of H. influenzae.
ISMB
Peter D. Karp, Christos A. Ouzounis, Suzanne M. Paley
1995 — conf
The Functional Composition of Living Machines as a Design Principle for Artificial Organisms.
ECAL
Christos A. Ouzounis, Alfonso Valencia, Javier Tamames, Peer Bork, Chris Sander
1994 A conf
GeneQuiz: A Workbench for Sequence Analysis.
ISMB
Michael Scharf, Reinhard Schneider, Georg Casari, Peer Bork, Alfonso Valencia, Christos A. Ouzounis, Chris Sander