Christopher James Langmead

47 papers A* 2A 1B 10C 1Journal 20Unranked 13
YearRankTypeTitle / Venue / Authors
2025 J jnl
Structure-Aligned Protein Language Model.
CoRR
Can Chen, David Heurtel-Depeiges, Robert M. Vernon, Christopher James Langmead, Yoshua Bengio, Quentin Fournier
2023 J jnl
Peptide Binding Classification on Quantum Computers.
CoRR
Charles London, Douglas Brown, Wenduan Xu, Sezen Vatansever, Christopher James Langmead, Dimitri Kartsaklis, Stephen Clark, Konstantinos Meichanetzidis
2022 J jnl
Deep Normed Embeddings for Patient Representation.
CoRR
Thesath Nanayakkara, Gilles Clermont, Christopher James Langmead, David Swigon
2021 J jnl
Asynchronous parallel Bayesian optimization for AI-driven cloud laboratories.
Bioinform.
Trevor S. Frisby, Zhiyun Gong, Christopher James Langmead
2021 J jnl
Bayesian optimization with evolutionary and structure-based regularization for directed protein evolution.
Algorithms Mol. Biol.
Trevor S. Frisby, Christopher James Langmead
2021 J jnl
Unifying Cardiovascular Modelling with Deep Reinforcement Learning for Uncertainty Aware Control of Sepsis Treatment.
CoRR
Thesath Nanayakkara, Gilles Clermont, Christopher James Langmead, David Swigon
2015 J jnl
Learning Sequence Determinants of Protein: Protein Interaction Specificity with Sparse Graphical Models.
J. Comput. Biol.
Hetunandan Kamisetty, Bornika Ghosh, Christopher James Langmead, Chris Bailey-Kellogg
2014 J jnl
Discovering rare behaviours in stochastic differential equations using decision procedures: applications to a minimal cell cycle model.
Int. J. Bioinform. Res. Appl.
Arup Kumar Ghosh, Faraz Hussain, Susmit Jha, Christopher James Langmead, Sumit Kumar Jha
2014 B conf
Learning Sequence Determinants of Protein: Protein Interaction Specificity with Sparse Graphical Models.
RECOMB
Hetunandan Kamisetty, Bornika Ghosh, Christopher James Langmead, Chris Bailey-Kellogg
2014 — conf
Parameter discovery for stochastic computational models in systems biology using Bayesian model checking.
ICCABS
Faraz Hussain, Christopher James Langmead, Qi Mi, Joyeeta Dutta-Moscato, Yoram Vodovotz, Sumit Kumar Jha
2014 J jnl
Parameter discovery in stochastic biological models using simulated annealing and statistical model checking.
Int. J. Bioinform. Res. Appl.
Faraz Hussain, Sumit Kumar Jha, Susmit Jha, Christopher James Langmead
2012 — conf
Decision procedure based discovery of rare behaviors in Stochastic Differential Equation models of biological systems.
ICCABS
Arup K. Ghosh, Faraz Hussain, Sumit Kumar Jha, Christopher James Langmead, Susmit Jha
2012 J jnl
Exploring behaviors of stochastic differential equation models of biological systems using change of measures.
BMC Bioinform.
Sumit Kumar Jha, Christopher James Langmead
2012 J jnl
Learning generative models of molecular dynamics.
BMC Genom.
Narges Razavian, Hetunandan Kamisetty, Christopher James Langmead
2012 — conf
Parameter discovery for stochastic biological models against temporal behavioral specifications using an SPRT based Metric for simulated annealing.
ICCABS
Faraz Hussain, Raj Gautam Dutta, Sumit Kumar Jha, Christopher James Langmead, Susmit Jha
2012 J jnl
Synthesis of insulin pump controllers from safety specifications using Bayesian model validation.
Int. J. Bioinform. Res. Appl.
Sumit Kumar Jha, Raj Gautam Dutta, Christopher James Langmead, Susmit Jha, Emily Sassano
2011 A* conf
Approximating Correlated Equilibria using Relaxations on the Marginal Polytope.
ICML
Hetunandan Kamisetty, Eric P. Xing, Christopher James Langmead
2011 — conf
Exploring behaviors of SDE models of biological systems using change of measures.
ICCABS
Sumit Kumar Jha, Christopher James Langmead
2011 — conf
Poster: Synthesis of biochemical models.
ICCABS
Sumit Kumar Jha, Christopher James Langmead
2011 J jnl
Synthesis and infeasibility analysis for stochastic models of biochemical systems using statistical model checking and abstraction refinement.
Theor. Comput. Sci.
Sumit Kumar Jha, Christopher James Langmead
2011 A conf
When to stop verification?: Statistical trade-off between expected loss and simulation cost.
DATE
Sumit Kumar Jha, Christopher James Langmead, Swarup Mohalik, S. Ramesh
2010 J jnl
An Online Approach for Mining Collective Behaviors from Molecular Dynamics Simulations.
J. Comput. Biol.
Arvind Ramanathan, Pratul K. Agarwal, Maria G. Kurnikova, Christopher James Langmead
2010 — conf
Analogies between structural and systems biology and systems-of-systems engineering in dynamic environments.
SoSE
Subhodeep Moitra, Naveena Yanamala, Öznur Tastan, Irtisha Singh, Christopher James Langmead, Judith Klein-Seetharaman
2010 J jnl
Parameter Synthesis in Nonlinear Dynamical Systems: Application to Systems Biology.
J. Comput. Biol.
Alexandre Donzé, Gilles Clermont, Christopher James Langmead
2009 — conf
A Bayesian Approach to Model Checking Biological Systems.
CMSB
Sumit Kumar Jha, Edmund M. Clarke, Christopher James Langmead, Axel Legay, André Platzer, Paolo Zuliani
2009 A* conf
A Bayesian approach to protein model quality assessment.
ICML
Hetunandan Kamisetty, Christopher James Langmead
2009 B conf
An Online Approach for Mining Collective Behaviors from Molecular Dynamics Simulations.
RECOMB
Arvind Ramanathan, Pratul K. Agarwal, Maria G. Kurnikova, Christopher James Langmead
2009 B conf
Parameter Synthesis in Nonlinear Dynamical Systems: Application to Systems Biology.
RECOMB
Alexandre Donzé, Gilles Clermont, Axel Legay, Christopher James Langmead
2009 J jnl
Symbolic Approaches for Finding Control Strategies in Boolean Networks.
J. Bioinform. Comput. Biol.
Christopher James Langmead, Sumit Kumar Jha
2008 J jnl
Free Energy Estimates of All-Atom Protein Structures Using Generalized Belief Propagation.
J. Comput. Biol.
Hetunandan Kamisetty, Eric P. Xing, Christopher James Langmead
2008 — conf
Statistical Model Checking in BioLab: Applications to the Automated Analysis of T-Cell Receptor Signaling Pathway.
CMSB
Edmund M. Clarke, James R. Faeder, Christopher James Langmead, Leonard A. Harris, Sumit Kumar Jha, Axel Legay
2008 B conf
Symbolic Approaches for Finding Control Strategies in Boolean Networks.
APBC
Christopher James Langmead, Sumit Kumar Jha
2007 B conf
Free Energy Estimates of All-Atom Protein Structures Using Generalized Belief Propagation.
RECOMB
Hetunandan Kamisetty, Eric P. Xing, Christopher James Langmead
2007 C conf
Predicting Protein Folding Kinetics Via Temporal Logic Model Checking.
WABI
Christopher James Langmead, Sumit Kumar Jha
2006 B conf
A Randomized Algorithm for Learning Mahalanobis Metrics: Application to Classification and Regression of Biological Data.
APBC
Christopher James Langmead
2006 B conf
Structure-Based Chemical Shift Prediction Using Random Forests Non-Linear Regression.
APBC
K. Arun, Christopher James Langmead
2005 J jnl
A Probability-Based Similarity Measure for Saupe Alignment Tensors with Applications to Residual Dipolar Couplings in NMR Structural Biology.
Int. J. Robotics Res.
Anthony K. Yan, Christopher James Langmead, Bruce Randall Donald
2004 J jnl
A Polynomial-Time Nuclear Vector Replacement Algorithm for Automated NMR Resonance Assignments.
J. Comput. Biol.
Christopher James Langmead, Anthony K. Yan, Ryan H. Lilien, Lincong Wang, Bruce Randall Donald
2004 — conf
High-Throughput 3D Structural Homology Detection via NMR Resonance Assignment.
CSB
Christopher James Langmead, Bruce Randall Donald
2004 — conf
Large-Scale Testing of Chemical Shift Prediction Algorithms and Improved Machine Learning-Based Approaches to Shift Prediction.
CSB
K. Arun, Christopher James Langmead
2003 — conf
3D Structural Homology Detection via Unassigned Residual Dipolar Couplings.
CSB
Christopher James Langmead, Bruce Randall Donald
2003 B conf
Large a polynomial-time nuclear vector replacement algorithm for automated NMR resonance assignments.
RECOMB
Christopher James Langmead, Anthony K. Yan, Ryan H. Lilien, Lincong Wang, Bruce Randall Donald
2003 J jnl
Phase-Independent Rhythmic Analysis of Genome-Wide Expression Patterns.
J. Comput. Biol.
Christopher James Langmead, Anthony K. Yan, C. Robertson McClung, Bruce Randall Donald
2002 — conf
A Maximum Entropy Algorithm for Rhythmic Analysis of Genome-Wide Expression Patterns.
CSB
Christopher James Langmead, C. Robertson McClung, Bruce Randall Donald
2002 B conf
Phase-independent rhythmic analysis of genome-wide expression patterns.
RECOMB
Christopher James Langmead, Anthony K. Yan, C. Robertson McClung, Bruce Randall Donald
2001 B conf
Extracting structural information using time-frequency analysis of protein NMR data.
RECOMB
Christopher James Langmead, Bruce Randall Donald
1995 — conf
Sound Analysis, Comparison and Modification Based on Perceptual Model of Timbre.
ICMC
Christopher James Langmead