Christopher J. O. Baker

63 papers B 1C 3Misc 2Journal 21Unranked 28

Year	Rank	Type	Title / Venue / Authors
2021	J	`jnl`	Perspectives on automated composition of workflows in the life sciences. F1000Research Anna-Lena Lamprecht, Magnus Palmblad, Jon C. Ison, Veit Schwämmle, Mohammad Sadnan Al Manir, Ilkay Altintas, Christopher J. O. Baker, Ammar Ben Hadj Amor, Salvador Capella-Gutiérrez, Paulos Charonyktakis, Michael R. Crusoe, Yolanda Gil, Carole A. Goble, Timothy J. Griffin, Paul Groth, Hans Ienasescu, Pratik D. Jagtap, Matús Kalas, Vedran Kasalica, Alireza Khanteymoori, Tobias Kuhn, Hailiang Mei, Hervé Ménager, Steffen Möller, Robin A. Richardson, Vincent Robert, Stian Soiland-Reyes, Robert Stevens, Szaniszlo Szoke, Suzan Verberne, Aswin Verhoeven, Katherine Wolstencroft
2019	J	`jnl`	A Surveillance Infrastructure for Malaria Analytics: Provisioning Data Access and Preservation of Interoperability. CoRR Mohammad Sadnan Al Manir, Jon Haël Brenas, Christopher J. O. Baker, Arash Shaban-Nejad
2019	—	`conf`	A Working Semantic Model for the Integration of Occupation, Function and Health. SWAT4HCLS Anil Adisesh, Hongchang Bao, Mohammad Sadnan Al Manir, Christopher J. O. Baker
2018	J	`jnl`	Decision Support for Agricultural Consultants With Semantic Data Federation. Int. J. Agric. Environ. Inf. Syst. Mohammad Sadnan Al Manir, Bruce Spencer, Christopher J. O. Baker
2018	—	`conf`	Design of a framework to support reuse of Open Data about agriculture. SWAT4LS Alec Gordon, Mohammad Sadnan Al Manir, Brandon Smith, Amir Hossein Rezaie, Christopher J. O. Baker
2018	—	`conf`	Exploring Semantic Data Federation to Enable Malaria Surveillance Queries. MIE Jon Haël Brenas, Mohammad Sadnan Al Manir, Kate Zinszer, Christopher J. O. Baker, Arash Shaban-Nejad
2018	—	`ed.`	Proceedings of the 11th International Conference Semantic Web Applications and Tools for Life Sciences, SWAT4LS 2018, Antwerp, Belgium, December 3-6, 2018. SWAT4LS Andra Waagmeester, Christopher J. O. Baker, Andrea Splendiani, Oya Deniz Beyan, M. Scott Marshall
2017	—	`conf`	A Change Management Dashboard for the SIEMA Global Malaria Surveillance Infrastructure. ISWC (Posters, Demos & Industry Tracks) Jon Haël Brenas, Mohammad Sadnan Al Manir, Christopher J. O. Baker, Arash Shaban-Nejad
2017	J	`jnl`	A Malaria Analytics Framework to Support Evolution and Interoperability of Global Health Surveillance Systems. IEEE Access Jon Haël Brenas, Mohammad Sadnan Al Manir, Christopher J. O. Baker, Arash Shaban-Nejad
2016	—	`conf`	Automated generation of SADI semantic web services for clinical intelligence. SBD@SIGMOD Mohammad Sadnan Al Manir, Alexandre Riazanov, Harold Boley, Artjom Klein, Christopher J. O. Baker
2016	J	`jnl`	From Cues to Nudge: A Knowledge-Based Framework for Surveillance of Healthcare-Associated Infections. J. Medical Syst. Arash Shaban-Nejad, Hiroshi Mamiya, Alexandre Riazanov, Alan J. Forster, Christopher J. O. Baker, Robyn Tamblyn, David L. Buckeridge
2016	C	`conf`	Valet SADI: Provisioning SADI Web Services for Semantic Querying of Relational Databases. IDEAS Mohammad Sadnan Al Manir, Alexandre Riazanov, Harold Boley, Artjom Klein, Christopher J. O. Baker
2015	—	`conf`	Automated Generation of SADI Web Services for Clinical Intelligence using Ruled-Based Semantic Mappings. SWAT4LS Mohammad Sadnan Al Manir, Alexandre Riazanov, Harold Boley, Artjom Klein, Christopher J. O. Baker
2015	—	`conf`	BIM: an open ontology for the annotation of biomedical images. ICBO Ahmad C. Bukhari, Mate Levente Nagy, Michael Krauthammer, Paolo Ciccarese, Christopher J. O. Baker
2015	—	`conf`	iCyrus: A Semantic Framework for Biomedical Image Discovery. SWAT4LS Syed Ahmad Chan Bukhari, Mate Levente Nagy, Paolo Ciccarese, Michael Krauthammer, Christopher J. O. Baker
2014	J	`jnl`	Benchmarking infrastructure for mutation text mining. J. Biomed. Semant. Artjom Klein, Alexandre Riazanov, Matthew M. Hindle, Christopher J. O. Baker
2014	—	`conf`	Offshore Holdings Analytics Using Datalog+ RuleML Rules. Challenge+DC@RuleML Mohammad Sadnan Al Manir, Christopher J. O. Baker
2014	—	`conf`	SEBI: An Architecture for Biomedical Image Discovery, Interoperability and Reusability Based on Semantic Enrichment. SWAT4LS Syed Ahmad Chan Bukhari, Michael Krauthammer, Christopher J. O. Baker
2014	J	`jnl`	The Semanticscience Integrated Ontology (SIO) for biomedical research and knowledge discovery. J. Biomed. Semant. Michel Dumontier, Christopher J. O. Baker, Joachim Baran, Alison Callahan, Leonid L. Chepelev, Jose Cruz-Toledo, Nicholas R. Del Rio, Geraint Duck, Laura Inés Furlong, Nichealla Keath, Dana Klassen, Jamie P. McCusker, Núria Queralt-Rosinach, Matthias Samwald, Natalia Villanueva-Rosales, Mark D. Wilkinson, Robert Hoehndorf
2013	—	`ed.`	Data Integration in the Life Sciences - 9th International Conference, DILS 2013, Montreal, QC, Canada, July 11-12, 2013. Proceedings DILS Christopher J. O. Baker, Greg Butler, Igor Jurisica
2013	—	`conf`	Generating Semantic Web Services from Declarative Descriptions. CSWS Mohammad Sadnan Al Manir, Alexandre Riazanov, Harold Boley, Christopher J. O. Baker
2013	—	`ed.`	Proceedings of the 4th Canadian Semantic Web Symposium part of the Semantic Trilogy 2013, Montreal, QC, Canada, July 10th, 2013. CSWS René Witte, Christopher J. O. Baker, Greg Butler, Michel Dumontier
2013	—	`ed.`	Proceedings of the 4th International Conference on Biomedical Ontology, ICBO 2013, Montreal, Canada, July 7-12, 2013. ICBO Michel Dumontier, Robert Hoehndorf, Christopher J. O. Baker
2013	J	`jnl`	Semantic querying of relational data for clinical intelligence: a semantic web services-based approach. J. Biomed. Semant. Alexandre Riazanov, Artjom Klein, Arash Shaban-Nejad, Gregory W. Rose, Alan J. Forster, David L. Buckeridge, Christopher J. O. Baker
2013	—	`conf`	Towards Interoperable BioNLP Semantic Web Services Using the SADI Framework. DILS Ahmad C. Bukhari, Artjom Klein, Christopher J. O. Baker
2012	—	`conf`	Benchmarking infrastructure for mutation text mining. AIMM Artjom Klein, Alexandre Riazanov, Matthew M. Hindle, Christopher J. O. Baker
2012	—	`conf`	Ecotoxicology Data Federation with SADI Semantic Web Services. SWAT4LS Alexandre Riazanov, Matthew M. Hindle, E. Scott Goudreau, Chris Martyniuk, Christopher J. O. Baker
2012	—	`conf`	HAIKU: A Semantic Framework for Surveillance of Healthcare-Associated Infections. ANT/MobiWIS Arash Shaban-Nejad, Alexandre Riazanov, Katia M. L. Charland, Gregory W. Rose, Christopher J. O. Baker, Robyn Tamblyn, Alan J. Forster, David L. Buckeridge
2012	—	`conf`	PSOA RuleML API: A Tool for Processing Abstract and Concrete Syntaxes. RuleML Mohammad Sadnan Al Manir, Alexandre Riazanov, Harold Boley, Christopher J. O. Baker
2012	—	`ed.`	Proceedings of the Workshop on Annotation, Interpretation and Management of Mutations, Basel, Switzerland, September 9, 2012. AIMM Christopher J. O. Baker, Dietrich Rebholz-Schuhmann
2011	—	`conf`	Algorithm for Population of Object Property Assertions Derived from Telecom Contact Centre Product Support Documentation. AINA Workshops Alexandre Kouznetsov, Jonas B. Laurila, Christopher J. O. Baker, Bradley Shoebottom
2011	J	`jnl`	Assessment of NER solutions against the first and second CALBC Silver Standard Corpus. J. Biomed. Semant. Dietrich Rebholz-Schuhmann, Antonio Jimeno-Yepes, Chen Li, Senay Kafkas, Ian Lewin, Ning Kang, Peter T. Corbett, David Milward, Ekaterina Buyko, Elena Beisswanger, Kerstin Hornbostel, Alexandre Kouznetsov, René Witte, Jonas B. Laurila, Christopher J. O. Baker, Cheng-Ju Kuo, Simon Clematide, Fabio Rinaldi, Richárd Farkas, György Móra, Kazuo Hara, Laura Inés Furlong, Michael Rautschka, Mariana L. Neves, Alberto D. Pascual-Montano, Qi Wei, Nigel Collier, Md. Faisal Mahbub Chowdhury, Alberto Lavelli, Rafael Berlanga Llavori, Roser Morante, Vincent Van Asch, Walter Daelemans, José Luís Marina, Erik M. van Mulligen, Jan A. Kors, Udo Hahn
2011	J	`jnl`	Deploying mutation impact text-mining software with the SADI Semantic Web Services framework. BMC Bioinform. Alexandre Riazanov, Jonas Laurila Bergman, Christopher J. O. Baker
2011	B	`conf`	Extraction and Grounding of Protein Mutations via Semantic Integration of Text and Sequence Information. AINA Christopher J. O. Baker, Rajaraman Kanagasabai
2011	—	`conf`	Knowledge-based Surveillance for Preventing Postoperative Surgical Site Infection. MIE Arash Shaban-Nejad, Gregory W. Rose, Anya Okhmatovskaia, Alexandre Riazanov, Christopher J. O. Baker, Robyn Tamblyn, Alan J. Forster, David L. Buckeridge
2011	—	`conf`	Leveraging SADI Semantic Web Services to Exploit Fish Ecotoxicology Data. CSWS Matthew M. Hindle, Alexandre Riazanov, Edward S. Goudreau, Christopher J. Martyniuk, Christopher J. O. Baker
2011	J	`jnl`	OrganismTagger: detection, normalization and grounding of organism entities in biomedical documents. Bioinform. Nona Naderi, Thomas Kappler, Christopher J. O. Baker, René Witte
2011	—	`ed.`	Proceedings of the 3rd Canadian Semantic Web Symposium (CSWS2011), Vancouver, British Columbia, Canada, August 5, 2011 CSWS Christopher J. O. Baker, Helen Chen, Ebrahim Bagheri, Weichang Du
2011	J	`jnl`	Prototype Semantic Infrastructure for Automated Small Molecule Classification and Annotation in Lipidomics. BMC Bioinform. Leonid L. Chepelev, Alexandre Riazanov, Alexandre Kouznetsov, Hong Sang Low, Michel Dumontier, Christopher J. O. Baker
2011	—	`conf`	Towards clinical intelligence with SADI semantic web services: a case study with hospital-acquired infections data. SWAT4LS Alexandre Riazanov, Gregory W. Rose, Artjom Klein, Alan J. Forster, Christopher J. O. Baker, Arash Shaban-Nejad, David L. Buckeridge
2010	—	`conf`	Algorithm for Grounding Mutation Mentions from Text to Protein Sequences. DILS Jonas Laurila Bergman, Rajaraman Kanagasabai, Christopher J. O. Baker
2010	—	`conf`	Assessment of NER solutions against the first and second CALBC silver standard corpus. Semantic Mining in Biomedicine Dietrich Rebholz-Schuhmann, Antonio Jimeno-Yepes, Chen Li, Senay Kafkas, Ian Lewin, Ning Kang, Peter T. Corbett, David Milward, Ekaterina Buyko, Elena Beisswanger, Kerstin Hornbostel, Alexandre Kouznetsov, René Witte, Jonas B. Laurila, Christopher J. O. Baker, Cheng-Ju Kuo, Simon Clematide, Fabio Rinaldi, Richárd Farkas, György Móra, Kazuo Hara, Laura Inés Furlong, Michael Rautschka, Mariana L. Neves, Alberto D. Pascual-Montano, Qi Wei, Nigel Collier, Md. Faisal Mahbub Chowdhury, Alberto Lavelli, Rafael Berlanga Llavori, Roser Morante, Vincent Van Asch, Walter Daelemans, José Luís Marina, Erik M. van Mulligen, Jan A. Kors, Udo Hahn
2010	—	`conf`	Leverage of OWL-DL axioms in a Contact Centre for Technical Product Support. OWLED Alexandre Kouznetsov, Bradley Shoebottom, René Witte, Christopher J. O. Baker
2009	J	`jnl`	Between proteins and phenotypes: annotation and interpretation of mutations. BMC Bioinform. Christopher J. O. Baker, Dietrich Rebholz-Schuhmann
2009	—	`conf`	Slicing through the Scientific Literature. DILS Christopher J. O. Baker, Patrick Lambrix, Jonas Laurila Bergman, Kanagasabai Rajaraman, Wee Tiong Ang
2008	—	`conf`	Knowledge Translation: Computing the Query Potential of Bio-ontologies. SWAT4LS Wee Tiong Ang, Rajaraman Kanagasabai, Christopher J. O. Baker
2008	Misc	`conf`	Online everywhere: evolving mobile instant messaging practices. UbiComp Donald J. Patterson, Christopher J. O. Baker, Xianghua Ding, Samuel J. Kaufman, Kah Liu, Andrew Zaldivar
2008	J	`jnl`	Ontology-centric integration and navigation of the dengue literature. J. Biomed. Informatics Menaka Rajapakse, Kanagasabai Rajaraman, Wee Tiong Ang, Anitha Veeramani, Mark J. Schreiber, Christopher J. O. Baker
2008	—	`ed.`	Proceedings of the ECCB 2008 Workshop: Annotation, Interpretation and Management of Mutations ( AIMM ) Cagliari, Sardinia, Italy, September, June 22, 2008. AIMM Christopher J. O. Baker, Dietrich Rebholz-Schuhmann
2008	—	`ed.`	Short Paper Proceedings of the 2nd International Symposium on Languages in Biology and Medicine (LBM 2007), Singapore, December 6-7, 2007 LBM (Short Papers) Christopher J. O. Baker, Jian Su
2008	J	`jnl`	The Second International Symposium on Languages in Biology and Medicine (LBM) 2007. BMC Bioinform. Jian Su, Christopher J. O. Baker
2008	J	`jnl`	Towards ontology-driven navigation of the lipid BMC Bioinform. Christopher J. O. Baker, Kanagasabai Rajaraman, Wee Tiong Ang, Anitha Veeramani, Hong Sang Low, Markus R. Wenk
2007	J	`jnl`	A Workflow for Mutation Extraction and Structure Annotation. J. Bioinform. Comput. Biol. Kanagasabai Rajaraman, Khar Heng Choo, Shoba Ranganathan, Christopher J. O. Baker
2007	J	`jnl`	Enhanced semantic access to the protein engineering literature using ontologies populated by text mining. Int. J. Bioinform. Res. Appl. René Witte, Thomas Kappler, Christopher J. O. Baker
2007	—	`conf`	Literature-driven, Ontology-centric Knowledge Navigation for Lipidomics. FIRST Kanagasabai Rajaraman, Hong Sang Low, Wee Tiong Ang, Anitha Veeramani, Markus R. Wenk, Christopher J. O. Baker
2007	J	`jnl`	Towards a Systematic Evaluation of protein Mutation Extraction Systems. J. Bioinform. Comput. Biol. René Witte, Christopher J. O. Baker
2006	—	`conf`	A Distributed Agent System upon Semantic Web Technologies to Provide Biological Data. CSWWS Farzad Kohantorabi, Gregory Butler, Christopher J. O. Baker
2006	J	`jnl`	Mutation Mining-A Prospector's Tale. Inf. Syst. Frontiers Christopher J. O. Baker, René Witte
2006	—	`conf`	Ontoligent Interactive Query Tool. CSWWS Christopher J. O. Baker, Xiao Su, Greg Butler, Volker Haarslev
2006	J	`jnl`	Semantic web infrastructure for fungal enzyme biotechnologists. J. Web Semant. Christopher J. O. Baker, Arash Shaban-Nejad, Xiao Su, Volker Haarslev, Greg Butler
2006	C	`conf`	Using Selectional Restrictions to Query an OWL Ontology. FOIS Leila Kosseim, Reda Siblini, Christopher J. O. Baker, Sabine Bergler
2005	C	`conf`	Combining Biological Databases and Text Mining to Support New Bioinformatics Applications. NLDB René Witte, Christopher J. O. Baker
2005	Misc	`conf`	The FungalWeb Ontology: Semantic Web Challenges in Bioinformatics and Genomics. ISWC Arash Shaban-Nejad, Christopher J. O. Baker, Volker Haarslev, Greg Butler