Christopher G. Chute

259 papers A* 2B 2Misc 81Journal 99Unranked 75

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	Development of a robust corpus for automated evaluation of online health information in Chinese using the DISCERN scale. J. Am. Medical Informatics Assoc. Ting E, Xingxi Li, Jun Liang, JunHao Ma, Qichuan Fang, Shanli Chen, Jianbo Lei, Christopher G. Chute
2025	J	`jnl`	LinkML: An Open Data Modeling Framework. CoRR Sierra A. T. Moxon, Harold Solbrig, Nomi L. Harris, Patrick Kalita, Mark A. Miller, Sujay Patil, Kevin Schaper, Chris Bizon, J. Harry Caufield, Silvano Cirujano Cuesta, Corey Cox, Frank Dekervel, Damion M. Dooley, William D. Duncan, Tim Fliss, Sarah Gehrke, Adam S. L. Graefe, Harshad Hegde, AJ Ireland, Julius O. B. Jacobsen, Madan Krishnamurthy, Carlo Kroll, David Linke, Ryan Ly, Nicolas Matentzoglu, James A. Overton, Jonny L. Saunders, Deepak R. Unni, Gaurav Vaidya, Wouter-Michiel A. M. Vierdag, LinkML Community Contributors, Oliver Ruebel, Christopher G. Chute, Matthew H. Brush, Melissa A. Haendel, Christopher J. Mungall
2025	J	`jnl`	National COVID Cohort Collaborative data enhancements: a path for expanding common data models. J. Am. Medical Informatics Assoc. Kellie M. Walters, Marshall Clark, Sofia Dard, Stephanie S. Hong, Elizabeth Kelly, Kristin Kostka, Adam M. Lee, Robert T. Miller, Michele Morris, Matvey B. Palchuk, Emily R. Pfaff, Adam B. Wilcox, Alexis Graves, Alfred (Jerrod) Anzalone, Amin Manna, Amit Saha, Amy Olex, Andrea Zhou, Andrew E. Williams, Andrew Southerland, Andrew T. Girvin, Anita Walden, Anjali A Sharathkumar, Benjamin R. C. Amor, Benjamin Bates, Brian Hendricks, Brijesh Patel, Caleb Alexander, Carolyn T. Bramante, Cavin Ward-Caviness, Charisse R. Madlock-Brown, Christine Suver, Christopher G. Chute, Christopher Dillon, Chunlei Wu, Clare Schmitt, Cliff Takemoto, Dan Housman, Davera Gabriel, David A. Eichmann, Diego Mazzotti, Don Brown, Eilis Boudreau, Elaine L. Hill, Elizabeth Zampino, Emily Carlson Marti, Evan French, Farrukh M. Koraishy, Federico Mariona, Fred W. Prior, George Sokos, Greg Martin, Harold P. Lehmann, Heidi Spratt, Hemalkumar Mehta, Hongfang Liu, Hythem Sidky, J. W. Awori Hayanga, Jami Pincavitch, Jaylyn Clark, Jeremy Richard Harper, Jessica Islam, Jin Ge, Joel Gagnier, Joel H. Saltz, Johanna Loomba, John Buse, Jomol P. Mathew, Joni L. Rutter, Julie A. McMurry, Justin Guinney, Justin Starren, Karen Crowley, Katie Rebecca Bradwell, Ken Wilkins, Kenneth R. Gersing, Kenrick Dwain Cato, Kimberly Murray, Lavance Northington, Lee Allan Pyles, Leonie Misquitta, Lesley Cottrell, Lili M. Portilla, Mariam Deacy, Mark M. Bissell, Mary Emmett, Mary Morrison Saltz, Melissa A. Haendel, Meredith C. B. Adams, Meredith Temple-O'Connor, Michael G. Kurilla, Nabeel Qureshi, Nasia Safdar, Nicole Garbarini, Noha Sharafeldin, Ofer Sadan, Patricia A. Francis, Penny Wung Burgoon, Peter N. Robinson, Philip R. O. Payne, Rafael Fuentes, Randeep Jawa, Rebecca Erwin-Cohen, Rena Patel, Richard A. Moffitt, Richard L. Zhu, Rishi Kamaleswaran, Robert Hurley, Saiju Pyarajan, Sam G. Michael, Samuel Bozzette, Sandeep Mallipattu, Satyanarayana Vedula, Scott Chapman, Shawn T. O'Neil, Soko Setoguchi, Steve Johnson, Tellen D. Bennett, Tiffany Callahan, Umit Topaloglu, Usman Sheikh, Valery Gordon, Vignesh Subbian, Warren A. Kibbe, Wenndy Hernandez, Will Beasley, Will Cooper, William Hillegass, Xiaohan Tanner Zhang
2024	J	`jnl`	Finding Long-COVID: temporal topic modeling of electronic health records from the N3C and RECOVER programs. npj Digit. Medicine Shawn T. O'Neil, Charisse R. Madlock-Brown, Kenneth Wilkins, Brenda M. McGrath, Hannah E. Davis, Gina S. Assaf, Hannah Wei, Parya Zareie, Evan T. French, Johanna Loomba, Julie A. McMurry, Andrea Zhou, Christopher G. Chute, Richard A. Moffitt, Emily R. Pfaff, Yun Jae Yoo, Peter Leese, Robert F. Chew, Michael Lieberman, Melissa A. Haendel
2024	—	`conf`	Linking Health Terminologies: A Unified Approach to the WHO Family of International Classifications. MIE Samson W. Tu, Ann-Helene Almborg, Andrea Martinuzzi, Vincenzo Della Mea, Kathy L. Giannangelo, Christopher G. Chute, Cassandra Linton, Ronald Cornet, Can Celik, Robert Jakob
2023	J	`jnl`	An open natural language processing (NLP) framework for EHR-based clinical research: a case demonstration using the National COVID Cohort Collaborative (N3C). J. Am. Medical Informatics Assoc. Sijia Liu, Andrew Wen, Liwei Wang, Huan He, Sunyang Fu, Robert T. Miller, Andrew E. Williams, Daniel R. Harris, Ramakanth Kavuluru, Mei Liu, Noor Abu-El-Rub, Dalton Schutte, Rui Zhang, Masoud Rouhizadeh, John D. Osborne, Yongqun He, Umit Topaloglu, Stephanie S. Hong, Joel H. Saltz, Thomas Schaffter, Emily R. Pfaff, Christopher G. Chute, Tim Duong, Melissa A. Haendel, Rafael Fuentes, Peter Szolovits, Hua Xu, Hongfang Liu
2023	J	`jnl`	Characterizing variability of electronic health record-driven phenotype definitions. J. Am. Medical Informatics Assoc. Pascal S. Brandt, Abel N. Kho, Yuan Luo, Jennifer A. Pacheco, Theresa L. Walunas, Hakon Hakonarson, George Hripcsak, Cong Liu, Ning Shang, Chunhua Weng, Nephi Walton, David S. Carrell, Paul K. Crane, Eric B. Larson, Christopher G. Chute, Iftikhar J. Kullo, Robert J. Carroll, Joshua C. Denny, Andrea H. Ramirez, Wei-Qi Wei, Jyotishman Pathak, Laura K. Wiley, Rachel L. Richesson, Justin B. Starren, Luke V. Rasmussen
2023	J	`jnl`	Clinical encounter heterogeneity and methods for resolving in networked EHR data: a study from N3C and RECOVER programs. J. Am. Medical Informatics Assoc. Peter Leese, Adit Anand, Andrew T. Girvin, Amin Manna, Saaya Patel, Yun Jae Yoo, Rachel Wong, Melissa A. Haendel, Christopher G. Chute, Tellen D. Bennett, Janos G. Hajagos, Emily R. Pfaff, Richard A. Moffitt
2023	J	`jnl`	De-black-boxing health AI: demonstrating reproducible machine learning computable phenotypes using the N3C-RECOVER Long COVID model in the J. Am. Medical Informatics Assoc. Emily R. Pfaff, Andrew T. Girvin, Miles Crosskey, Srushti Gangireddy, Hiral Master, Wei-Qi Wei, Vern Eric Kerchberger, Mark G. Weiner, Paul A. Harris, Melissa A. Basford, Christopher Lunt, Christopher G. Chute, Richard A. Moffitt, Melissa A. Haendel
2023	—	`conf`	FHIR-Ontop-OMOP: Querying OMOP clinical databases as FHIR-compliant Clinical Knowledge Graphs. SWAT4HCLS Guohui Xiao, Emily R. Pfaff, Eric Prud'hommeaux, David Booth, Deepak K. Sharma, Nan Huo, Yue Yu, Nansu Zong, Kathryn J. Ruddy, Christopher G. Chute, Guoqian Jiang
2022	Misc	`conf`	A Comparative Study on the Capability of Real-World Antineoplastic Drug Data Collection by CanMED, ATC and HemOnc. AMIA Yue Yu, Kathryn J. Ruddy, Nan Huo, Nansu Zong, Deirdre Pachman, Christopher G. Chute, Emily R. Pfaff, Andrea Cheville, Guoqian Jiang
2022	J	`jnl`	A Simple Standard for Sharing Ontological Mappings (SSSOM). Database J. Biol. Databases Curation Nicolas Matentzoglu, James P. Balhoff, Susan M. Bello, Chris Bizon, Matthew H. Brush, Tiffany J. Callahan, Christopher G. Chute, William D. Duncan, Chris T. A. Evelo, Davera Gabriel, John B. Graybeal, Alasdair J. G. Gray, Benjamin M. Gyori, Melissa A. Haendel, Henriette Harmse, Nomi L. Harris, Ian Harrow, Harshad Hegde, Amelia L. Hoyt, Charles Tapley Hoyt, Dazhi Jiao, Ernesto Jiménez-Ruiz, Simon Jupp, HyeongSik Kim, Sebastian Köhler, Thomas Liener, Qinqin Long, James Malone, James A. McLaughlin, Julie A. McMurry, Sierra A. T. Moxon, Monica C. Munoz-Torres, David Osumi-Sutherland, James A. Overton, Bjoern Peters, Tim E. Putman, Núria Queralt-Rosinach, Kent A. Shefchek, Harold Solbrig, Anne E. Thessen, Tania Tudorache, Nicole A. Vasilevsky, Alex H. Wagner, Christopher J. Mungall
2022	—	`conf`	Analyzing historical diagnosis code data from NIH N3C and RECOVER Programs using deep learning to determine risk factors for Long Covid. BIBM Saurav Sengupta, Johanna Loomba, Suchetha Sharma, Donald E. Brown, Lorna E. Thorpe, Melissa A. Haendel, Christopher G. Chute, Stephanie S. Hong
2022	J	`jnl`	Analyzing historical diagnosis code data from NIH N3C and RECOVER Programs using deep learning to determine risk factors for Long Covid. CoRR Saurav Sengupta, Johanna Loomba, Suchetha Sharma, Donald E. Brown, Lorna E. Thorpe, Melissa A. Haendel, Christopher G. Chute, Stephanie S. Hong
2022	J	`jnl`	Demonstrating an approach for evaluating synthetic geospatial and temporal epidemiologic data utility: results from analyzing >1.8 million SARS-CoV-2 tests in the United States National COVID Cohort Collaborative (N3C). J. Am. Medical Informatics Assoc. Jason A. Thomas, Randi E. Foraker, Noa Zamstein, Jon D. Morrow, Philip R. O. Payne, Adam B. Wilcox, Melissa A. Haendel, Christopher G. Chute, Kenneth R. Gersing, Anita Walden, Tellen D. Bennett, David A. Eichmann, Justin Guinney, Warren A. Kibbe, Hongfang Liu, Emily R. Pfaff, Peter N. Robinson, Joel H. Saltz, Heidi Spratt, Justin Starren, Christine Suver, Chunlei Wu, Davera Gabriel, Stephanie S. Hong, Kristin Kostka, Harold P. Lehmann, Richard A. Moffitt, Michele Morris, Matvey B. Palchuk, Xiaohan Tanner Zhang, Richard L. Zhu, Benjamin R. C. Amor, Mark M. Bissell, Marshall Clark, Andrew T. Girvin, Adam M. Lee, Robert T. Miller, Kellie M. Walters, Yooree Chae, Connor Cook, Alexandra Dest, Racquel R. Dietz, Thomas Dillon, Patricia A. Francis, Rafael Fuentes, Alexis Graves, Andrew J. Neumann, Shawn T. O'Neil, Usman Sheikh, Andréa M. Volz, Elizabeth Zampino, Christopher P. Austin, Samuel Bozzette, Mariam Deacy, Nicole Garbarini, Michael G. Kurilla, Sam G. Michael, Joni L. Rutter, Meredith Temple-O'Connor, Katie Rebecca Bradwell, Amin Manna, Nabeel Qureshi, Mary Morrison Saltz, Julie A. McMurry, Carolyn T. Bramante, Jeremy Richard Harper, Wenndy Hernandez, Farrukh M. Koraishy, Federico Mariona, Saidulu Mattapally, Amit Saha, Satyanarayana Vedula, Yujuan Fu, Nisha Mathews, Ofer Mendelevitch
2022	J	`jnl`	Developing an ETL tool for converting the PCORnet CDM into the OMOP CDM to facilitate the COVID-19 data integration. J. Biomed. Informatics Yue Yu, Nansu Zong, Andrew Wen, Sijia Liu, Daniel J. Stone, David Knaack, Alanna M. Chamberlain, Emily R. Pfaff, Davera Gabriel, Christopher G. Chute, Nilay Shah, Guoqian Jiang
2022	J	`jnl`	FHIR-Ontop-OMOP: Building clinical knowledge graphs in FHIR RDF with the OMOP Common data Model. J. Biomed. Informatics Guohui Xiao, Emily R. Pfaff, Eric Prud'hommeaux, David Booth, Deepak K. Sharma, Nan Huo, Yue Yu, Nansu Zong, Kathryn J. Ruddy, Christopher G. Chute, Guoqian Jiang
2022	J	`jnl`	Harmonizing units and values of quantitative data elements in a very large nationally pooled electronic health record (EHR) dataset. J. Am. Medical Informatics Assoc. Katie R. Bradwell, Jacob T. Wooldridge, Benjamin R. C. Amor, Tellen D. Bennett, Adit Anand, Carolyn Bremer, Yun Jae Yoo, Zhenglong Qian, Steven G. Johnson, Emily R. Pfaff, Andrew T. Girvin, Amin Manna, Emily Niehaus, Stephanie S. Hong, Xiaohan Tanner Zhang, Richard L. Zhu, Mark Bissell, Nabeel Qureshi, Joel H. Saltz, Melissa A. Haendel, Christopher G. Chute, Harold P. Lehmann, Richard A. Moffitt
2022	Misc	`conf`	Making a Case for Adoption of ICD-11 Morbidity Reporting in the U.S.: Multiple Perspectives. AMIA Christopher G. Chute, Susan H. Fenton, Mary H. Stanfill, Kathy L. Giannangelo
2022	Misc	`conf`	Modeling a Cancer Symptom Control Domain Using HL7 FHIR: Applicability of the Minimal Common Oncology Data Elements (mCODE). AMIA Nan Huo, Yue Yu, Nansu Zong, Andrea Cheville, Claude Nanjo, Eric Prud'hommeaux, Deirdre Pachman, Guohui Xiao, Emily R. Pfaff, Christopher G. Chute, Guoqian Jiang, Kathryn J. Ruddy
2022	J	`jnl`	Synergies between centralized and federated approaches to data quality: a report from the national COVID cohort collaborative. J. Am. Medical Informatics Assoc. Emily R. Pfaff, Andrew T. Girvin, Davera Gabriel, Kristin Kostka, Michele Morris, Matvey B. Palchuk, Harold P. Lehmann, Benjamin R. C. Amor, Mark Bissell, Katie R. Bradwell, Sigfried Gold, Stephanie S. Hong, Johanna Loomba, Amin Manna, Julie A. McMurry, Emily Niehaus, Nabeel Qureshi, Anita Walden, Xiaohan Tanner Zhang, Richard L. Zhu, Richard A. Moffitt, Christopher G. Chute, William G. Adams, Shaymaa Al-Shukri, Alfred Anzalone, Ahmad Baghal, Tellen D. Bennett, Elmer V. Bernstam, Mark M. Bissell, Brian Bush, Thomas R. Campion Jr., Victor Castro, Jack Chang, Deepa D. Chaudhari, Wenjin Chen, San Chu, James J. Cimino, Keith A. Crandall, Mark Crooks, Sara J. Deakyne Davies, John Dipalazzo, David A. Dorr, Dan Eckrich, Sarah E. Eltinge, Daniel G. Fort, George Golovko, Snehil Gupta, Melissa A. Haendel, Janos G. Hajagos, David A. Hanauer, Brett M. Harnett, Ronald Horswell, Nancy Huang, Steven G. Johnson, Michael Kahn, Kamil Khanipov, Curtis Kieler, Katherine Ruiz De Luzuriaga, Sarah E. Maidlow, Ashley Martinez, Jomol Mathew, James C. McClay, Gabriel McMahan, Brian Melancon, Stéphane M. Meystre, Lucio Miele, Hiroki Morizono, Ray Pablo, Lav P. Patel, Jimmy Phuong, Daniel J. Popham, Claudia P. Pulgarin, Carlos Santos, Indra Neil Sarkar, Nancy Sazo, Soko Setoguchi, Selvin Soby, Sirisha Surampalli, Christine Suver, Uma Maheswara Reddy Vangala, Shyam Visweswaran, James von Oehsen, Kellie M. Walters, Laura K. Wiley, David A. Williams, Adrian H. Zai
2021	J	`jnl`	A Simple Standard for Sharing Ontological Mappings (SSSOM). CoRR Nicolas Matentzoglu, James P. Balhoff, Susan M. Bello, Chris Bizon, Matthew H. Brush, Tiffany J. Callahan, Christopher G. Chute, William D. Duncan, Chris T. A. Evelo, Davera Gabriel, John B. Graybeal, Alasdair J. G. Gray, Benjamin M. Gyori, Melissa A. Haendel, Henriette Harmse, Nomi L. Harris, Ian Harrow, Harshad Hegde, Amelia L. Hoyt, Charles Tapley Hoyt, Dazhi Jiao, Ernesto Jiménez-Ruiz, Simon Jupp, HyeongSik Kim, Sebastian Köhler, Thomas Liener, Qinqin Long, James Malone, James A. McLaughlin, Julie A. McMurry, Sierra A. T. Moxon, Monica C. Munoz-Torres, David Osumi-Sutherland, James A. Overton, Bjoern Peters, Tim E. Putman, Núria Queralt-Rosinach, Kent A. Shefchek, Harold Solbrig, Anne E. Thessen, Tania Tudorache, Nicole A. Vasilevsky, Alex H. Wagner, Christopher J. Mungall
2021	J	`jnl`	An Open Natural Language Processing Development Framework for EHR-based Clinical Research: A case demonstration using the National COVID Cohort Collaborative (N3C). CoRR Sijia Liu, Andrew Wen, Liwei Wang, Huan He, Sunyang Fu, Robert T. Miller, Andrew E. Williams, Daniel R. Harris, Ramakanth Kavuluru, Mei Liu, Noor Abu-El-Rub, Rui Zhang, John D. Osborne, Masoud Rouhizadeh, Yongqun He, Emily R. Pfaff, Christopher G. Chute, Tim Duong, Melissa A. Haendel, Rafael Fuentes, Peter Szolovits, Hua Xu, Hongfang Liu
2021	J	`jnl`	ICD-11 extension codes support detailed clinical abstraction and comprehensive classification. BMC Medical Informatics Decis. Mak. Saskia E. Drösler, Stefanie Weber, Christopher G. Chute
2021	J	`jnl`	ICD-11: A catalyst for advancing patient safety surveillance globally. BMC Medical Informatics Decis. Mak. Alan J. Forster, Christopher G. Chute, Harold Alan Pincus, William A. Ghali
2021	J	`jnl`	ICD-11: an international classification of diseases for the twenty-first century. BMC Medical Informatics Decis. Mak. James E. Harrison, Stefanie Weber, Robert Jakob, Christopher G. Chute
2021	J	`jnl`	Overview of ICD-11 architecture and structure. BMC Medical Informatics Decis. Mak. Christopher G. Chute, Can Çelik
2021	J	`jnl`	Postcoordination of codes in ICD-11. BMC Medical Informatics Decis. Mak. Kristy Mabon, Olafr Steinum, Christopher G. Chute
2021	J	`jnl`	The Human Phenotype Ontology in 2021. Nucleic Acids Res. Sebastian Köhler, Michael A. Gargano, Nicolas Matentzoglu, Leigh Carmody, David Lewis-Smith, Nicole A. Vasilevsky, Daniel Danis, Ganna Balagura, Gareth Baynam, Amy M. Brower, Tiffany J. Callahan, Christopher G. Chute, Johanna L. Est, Peter D. Galer, Shiva Ganesan, Matthias Griese, Matthias Haimel, Julia Pazmandi, Marc Hanauer, Nomi L. Harris, Michael Hartnett, Maximilian Hastreiter, Fabian Hauck, Yongqun He, Tim Jeske, Hugh Kearney, Gerhard Kindle, Christoph Klein, Katrin Knoflach, Roland Krause, David Lagorce, Julie A. McMurry, Jillian A. Miller, Monica C. Munoz-Torres, Rebecca L. Peters, Christina K. Rapp, Ana Rath, Shahmir A. Rind, Avi Z. Rosenberg, Michael M. Segal, Markus G. Seidel, Damian Smedley, Tomer Talmy, Yarlalu Thomas, Samuel A. Wiafe, Julie Xian, Zafer Yüksel, Ingo Helbig, Christopher J. Mungall, Melissa A. Haendel, Peter N. Robinson
2021	J	`jnl`	The National COVID Cohort Collaborative (N3C): Rationale, design, infrastructure, and deployment. J. Am. Medical Informatics Assoc. Melissa A. Haendel, Christopher G. Chute, Tellen D. Bennett, David A. Eichmann, Justin Guinney, Warren A. Kibbe, Philip R. O. Payne, Emily R. Pfaff, Peter N. Robinson, Joel H. Saltz, Heidi Spratt, Christine Suver, John Wilbanks, Adam B. Wilcox, Andrew E. Williams, Chunlei Wu, Clair Blacketer, Robert L. Bradford, James J. Cimino, Marshall Clark, Evan W. Colmenares, Patricia A. Francis, Davera Gabriel, Alexis Graves, Raju Hemadri, Stephanie S. Hong, George Hripcsak, Dazhi Jiao, Jeffrey G. Klann, Kristin Kostka, Adam M. Lee, Harold P. Lehmann, Lora Lingrey, Robert T. Miller, Michele Morris, Shawn N. Murphy, Karthik Natarajan, Matvey B. Palchuk, Usman Sheikh, Harold Solbrig, Shyam Visweswaran, Anita Walden, Kellie M. Walters, Griffin M. Weber, Xiaohan Tanner Zhang, Richard L. Zhu, Benjamin R. C. Amor, Andrew T. Girvin, Amin Manna, Nabeel Qureshi, Michael G. Kurilla, Sam G. Michael, Lili M. Portilla, Joni L. Rutter, Christopher P. Austin, Ken R. Gersing
2020	Misc	`conf`	Toward a Harmonized WHO Family of International Classifications Content Model. AMIA Samson W. Tu, Csongor Nyulas, Tania Tudorache, Mark A. Musen, Andrea Martinuzzi, Coen H. van Gool, Vincenzo Della Mea, Christopher G. Chute, Lucilla Frattura, Nicholas R. Hardiker, Huib ten Napel, Richard Madden, Ann-Helene Almborg, Jeewani Anupama Ginige, Catherine Sykes, Can Çelik, Robert Jakob
2020	—	`conf`	Toward a Harmonized WHO Family of International Classifications Content Model. MIE Samson W. Tu, Csongor I. Nyulas, Tania Tudorache, Mark A. Musen, Andrea Martinuzzi, Coen H. van Gool, Vincenzo Della Mea, Christopher G. Chute, Lucilla Frattura, Nick Hardiker, Huib ten Napel, Richard Madden, Ann-Helene Almborg, Jeewani Anupama Ginige, Catherine Sykes, Can Celik, Robert Jakob
2019	J	`jnl`	On beyond Gruber: "Ontologies" in today's biomedical information systems and the limits of OWL. J. Biomed. Informatics X Alan L. Rector, Stefan Schulz, Jean Marie Rodrigues, Christopher G. Chute, Harold Solbrig
2019	J	`jnl`	Semantic integration of clinical laboratory tests from electronic health records for deep phenotyping and biomarker discovery. npj Digit. Medicine Xingmin Aaron Zhang, Amy Yates, Nicole A. Vasilevsky, Jean-Philippe F. Gourdine, Tiffany J. Callahan, Leigh C. Carmody, Daniel Danis, Marcin P. Joachimiak, Vida Ravanmehr, Emily R. Pfaff, James Champion, Kimberly Robasky, Hao Xu, Karamarie Fecho, Nephi A. Walton, Richard L. Zhu, Justin Ramsdill, Christopher J. Mungall, Sebastian Köhler, Melissa A. Haendel, Clement J. McDonald, Daniel J. Vreeman, David B. Peden, Tellen D. Bennett, James A. Feinstein, Blake Martin, Adrianne L. Stefanski, Lawrence E. Hunter, Christopher G. Chute, Peter N. Robinson
2019	J	`jnl`	Sex, obesity, diabetes, and exposure to particulate matter among patients with severe asthma: Scientific insights from a comparative analysis of open clinical data sources during a five-day hackathon. J. Biomed. Informatics Karamarie Fecho, Stanley C. Ahalt, Saravanan Arunachalam, James Champion, Christopher G. Chute, Sarah Davis, Kenneth Gersing, Gustavo Glusman, Jennifer Hadlock, Jewel Lee, Emily R. Pfaff, Max Robinson, Eric Sid, Casey N. Ta, Hao Xu, Richard L. Zhu, Qian Zhu, David B. Peden
2019	J	`jnl`	The 2018 fellow cohort of the American College of Medical Informatics. J. Am. Medical Informatics Assoc. Christopher G. Chute, Suzanne Bakken, William M. Tierney, Gretchen Purcell Jackson, James J. Cimino
2018	—	`conf`	Characterizing Design Patterns of EHR-Driven Phenotype Extraction Algorithms. BIBM Yizhen Zhong, Luke V. Rasmussen, Yu Deng, Jennifer A. Pacheco, Maureen E. Smith, Justin Starren, Wei-Qi Wei, Peter Speltz, Joshua C. Denny, Nephi Walton, George Hripcsak, Christopher G. Chute, Yuan Luo
2018	J	`jnl`	Characterizing Design Patterns of EHR-Driven Phenotype Extraction Algorithms. CoRR Yizhen Zhong, Luke V. Rasmussen, Yu Deng, Jennifer A. Pacheco, Maureen E. Smith, Justin Starren, Wei-Qi Wei, Peter Speltz, Joshua C. Denny, Nephi Walton, George Hripcsak, Christopher G. Chute, Yuan Luo
2018	J	`jnl`	Empowering genomic medicine by establishing critical sequencing result data flows: the eMERGE example. J. Am. Medical Informatics Assoc. Samuel J. Aronson, Lawrence J. Babb, Darren C. Ames, Richard A. Gibbs, Eric Venner, John J. Connelly, Keith Marsolo, Chunhua Weng, Marc S. Williams, Andrea L. Hartzler, Wayne H. Liang, James D. Ralston, Emily Beth Devine, Shawn N. Murphy, Christopher G. Chute, Pedro J. Caraballo, Iftikhar J. Kullo, Robert R. Freimuth, Luke V. Rasmussen, Firas H. Wehbe, Josh F. Peterson, Jamie R. Robinson, Ken Wiley, Casey Overby Taylor, eMERGE Network EHRI Working Group
2017	J	`jnl`	Building a semantic web-based metadata repository for facilitating detailed clinical modeling in cancer genome studies. J. Biomed. Semant. Deepak K. Sharma, Harold R. Solbrig, Cui Tao, Chunhua Weng, Christopher G. Chute, Guoqian Jiang
2017	—	`conf`	Interface Terminologies, Reference Terminologies and Aggregation Terminologies: A Strategy for Better Integration. MedInfo Stefan Schulz, Jean Marie Rodrigues, Alan L. Rector, Christopher G. Chute
2017	J	`jnl`	SMART-on-FHIR implemented over i2b2. J. Am. Medical Informatics Assoc. Kavishwar B. Wagholikar, Joshua C. Mandel, Jeffrey G. Klann, Nich Wattanasin, Michael Mendis, Christopher G. Chute, Kenneth D. Mandl, Shawn N. Murphy
2017	—	`conf`	The Pluripotent Rendering of Clinical Data for Precision Medicine. MedInfo Christopher G. Chute, Stanley M. Huff
2017	Misc	`conf`	Value of Genetics-informed Drug Dosing Guidance in Pregnant Women: A Needs Assessment with Obstetric Healthcare Providers at Johns Hopkins. AMIA Casey L. Overby, Phillip Thompkins, Harold P. Lehmann, Christopher G. Chute, Jeanne Sheffield
2016	—	`conf`	A Semantic Web RDF-based Approach for Modeling HL7 FHIR Profiles. CRI Eric Prud'hommeaux, Harold R. Solbrig, Deepak K. Sharma, Christopher G. Chute, Guoqian Jiang
2016	J	`jnl`	Clinical element models in the SHARPn consortium. J. Am. Medical Informatics Assoc. Thomas A. Oniki, Ning Zhuo, Calvin E. Beebe, Hongfang Liu, Joseph F. Coyle, Craig G. Parker, Harold R. Solbrig, Kyle Marchant, Vinod Kaggal, Christopher G. Chute, Stanley M. Huff
2016	J	`jnl`	Developing a data element repository to support EHR-driven phenotype algorithm authoring and execution. J. Biomed. Informatics Guoqian Jiang, Richard C. Kiefer, Luke V. Rasmussen, Harold R. Solbrig, Huan Mo, Jennifer A. Pacheco, Jie Xu, Enid N. H. Montague, William K. Thompson, Joshua C. Denny, Christopher G. Chute, Jyotishman Pathak
2016	J	`jnl`	Developing a modular architecture for creation of rule-based clinical diagnostic criteria. BioData Min. Na Hong, Jyotishman Pathak, Christopher G. Chute, Guoqian Jiang
2016	J	`jnl`	Practical considerations for implementing genomic information resources. Appl. Clin. Inform. Casey L. Overby, John J. Connolly, Christopher G. Chute, Joshua C. Denny, Robert R. Freimuth, Andrea L. Hartzler, Ingrid A. Holm, Shannon F. Manzi, Jyotishman Pathak, Peggy L. Peissig, Maureen E. Smith, Marc S. Williams, Brian H. Shirts, Elena M. Stoffel, Peter Tarczy-Hornoch, Carolyn Rohrer Vitek, Wendy A. Wolf, Justin Starren, Luke V. Rasmussen
2016	—	`conf`	Read only SMART on FHIR Façade for I2b2. CRI Kavishwar B. Wagholikar, Joshua C. Mandel, Jeffrey G. Klann, Nich Wattanasin, Michael Mendis, Christopher G. Chute, Kenneth D. Mandl, Shawn N. Murphy
2016	J	`jnl`	Using Semantic Web technologies for the generation of domain-specific templates to support clinical study metadata standards. J. Biomed. Semant. Guoqian Jiang, Julie Evans, Cory M. Endle, Harold R. Solbrig, Christopher G. Chute
2015	—	`conf`	A Pilot Study on Modeling of Diagnostic Criteria Using OWL and SWRL. MedInfo Na Hong, Guoqian Jiang, Jyotishman Pathak, Christopher G. Chute
2015	—	`conf`	A Standards-based Semantic Metadata Repository to Support EHR-driven Phenotype Authoring and Execution. MedInfo Guoqian Jiang, Harold R. Solbrig, Richard C. Kiefer, Luke V. Rasmussen, Huan Mo, Peter Speltz, William K. Thompson, Joshua C. Denny, Christopher G. Chute, Jyotishman Pathak
2015	J	`jnl`	CSER and eMERGE: current and potential state of the display of genetic information in the electronic health record. J. Am. Medical Informatics Assoc. Brian H. Shirts, Joseph S. Salama, Samuel J. Aronson, Wendy K. Chung, Stacy W. Gray, Lucia A. Hindorff, Gail P. Jarvik, Sharon E. Plon, Elena M. Stoffel, Peter Tarczy-Hornoch, Eliezer M. Van Allen, Karen E. Weck, Christopher G. Chute, Robert R. Freimuth, Robert Grundmeier, Andrea L. Hartzler, Rongling Li, Peggy L. Peissig, Josh F. Peterson, Luke V. Rasmussen, Justin B. Starren, Marc S. Williams, Casey Lynnette Overby
2015	J	`jnl`	Cancer based pharmacogenomics network supported with scientific evidences: from the view of drug repurposing. BioData Min. Liwei Wang, Hongfang Liu, Christopher G. Chute, Qian Zhu
2015	J	`jnl`	Desiderata for computable representations of electronic health records-driven phenotype algorithms. J. Am. Medical Informatics Assoc. Huan Mo, William K. Thompson, Luke V. Rasmussen, Jennifer A. Pacheco, Guoqian Jiang, Richard C. Kiefer, Qian Zhu, Jie Xu, Enid N. H. Montague, David S. Carrell, Todd Lingren, Frank D. Mentch, Yizhao Ni, Firas H. Wehbe, Peggy L. Peissig, Gerard Tromp, Eric B. Larson, Christopher G. Chute, Jyotishman Pathak, Joshua C. Denny, Peter Speltz, Abel N. Kho, Gail P. Jarvik, Cosmin Adrian Bejan, Marc S. Williams, Kenneth Borthwick, Terrie E. Kitchner, Dan M. Roden, Paul A. Harris
2015	—	`conf`	Developing a Modular Architecture for Creation of Rule-based Clinical Diagnostic Criteria. BDM2I@ISWC Na Hong, Guoqian Jiang, Jyotishman Pathak, Christopher G. Chute
2015	—	`conf`	Developing a Standards-Based Information Model for Representing Computable Diagnostic Criteria: A Feasibility Study of the NQF Quality Data Model. MedInfo Guoqian Jiang, Harold R. Solbrig, Jyotishman Pathak, Christopher G. Chute
2015	J	`jnl`	EHR based Genetic Testing Knowledge Base (iGTKB) Development. BMC Medical Informatics Decis. Mak. Qian Zhu, Hongfang Liu, Christopher G. Chute, Matthew Ferber
2015	—	`conf`	Feasibility of Modeling HL7 FHIR Profiles Using RDF Shape Expressions Language. SWAT4LS Harold R. Solbrig, Eric Prud'hommeaux, Deepak K. Sharma, Christopher G. Chute, Guoqian Jiang
2015	Misc	`conf`	Harmonization of ICD-11 and SNOMED CT - Not just mapping! Practical and Theoretical Lessons & Benefits to Users and Implementers. AMIA Alan L. Rector, James R. Campbell, Bedirhan Üstün, Christopher G. Chute, Harold R. Solbrig
2015	Misc	`conf`	Harmonization of Quality Data Model with HL7 FHIR to Support EHR-driven Phenotype Authoring and Execution: A Pilot Study. AMIA Guoqian Jiang, Harold R. Solbrig, Richard C. Kiefer, Luke V. Rasmussen, Huan Mo, Jennifer A. Pacheco, Enid N. H. Montague, Jie Xu, Peter Speltz, William K. Thompson, Joshua C. Denny, Christopher G. Chute, Jyotishman Pathak
2015	J	`jnl`	Health information technology data standards get down to business: maturation within domains and the emergence of interoperability. J. Am. Medical Informatics Assoc. Rachel L. Richesson, Christopher G. Chute
2015	J	`jnl`	Mining severe drug-drug interaction adverse events using Semantic Web technologies: a case study. BioData Min. Guoqian Jiang, Hongfang Liu, Harold R. Solbrig, Christopher G. Chute
2015	Misc	`conf`	Quality Assurance of Cancer Study Common Data Elements Using A Post-Coordination Approach. AMIA Guoqian Jiang, Harold R. Solbrig, Eric Prud'hommeaux, Cui Tao, Chunhua Weng, Christopher G. Chute
2015	—	`conf`	Representing Clinical Diagnostic Criteria in Quality Data Model Using Natural Language Processing. BioNLP@IJCNLP Na Hong, Dingcheng Li, Yue Yu, Hongfang Liu, Christopher G. Chute, Guoqian Jiang
2015	Misc	`conf`	Representing and Validating Cancer Study Metadata Standard Using RDF Shapes Expression Language. AMIA Harold R. Solbrig, Eric Prud'hommeaux, Christopher G. Chute, Guoqian Jiang
2015	—	`conf`	Semantic Alignment between ICD-11 and SNOMED CT. MedInfo Jean Marie Rodrigues, David J. Robinson, Vincenzo Della Mea, James R. Campbell, Alan L. Rector, Stefan Schulz, Hazel Brear, Bedirhan Üstün, Kent A. Spackman, Christopher G. Chute, Jane Millar, Harold R. Solbrig, Kristina Brand Persson
2015	J	`jnl`	Transformation of standardized clinical models based on OWL technologies: from CEM to OpenEHR archetypes. J. Am. Medical Informatics Assoc. María Del Carmen Legaz-García, Marcos Menárguez Tortosa, Jesualdo Tomás Fernández-Breis, Christopher G. Chute, Cui Tao
2014	Misc	`conf`	A Template for Authoring and Adapting Genomic Medicine Content in the eMERGE Infobutton Project. AMIA Casey L. Overby, Luke V. Rasmussen, Andrea L. Hartzler, John J. Connolly, Josh F. Peterson, RoseMary Hedberg, Robert R. Freimuth, Brian H. Shirts, Joshua C. Denny, Eric B. Larson, Christopher G. Chute, Gail P. Jarvik, James D. Ralston, Alan R. Shuldiner, Iftikhar J. Kullo, Peter Tarczy-Hornoch, Marc S. Williams
2014	—	`conf`	A Web-Based Tool for Development of a Common Ontology between ICD11 and SNOMED-CT. ICHI Vincenzo Della Mea, Omar Vuattolo, Bedirhan Üstün, Alan L. Rector, Stefan Schulz, Jean Marie Rodrigues, Kent A. Spackman, David J. Robinson, Jane Millar, James R. Campbell, Christopher G. Chute, Harold R. Solbrig, Kristina Brand Persson
2014	J	`jnl`	A use case study on late stent thrombosis for ontology-based temporal reasoning and analysis. J. Biomed. Semant. Kimberly Clark, Deepak K. Sharma, Rui Qin, Christopher G. Chute, Cui Tao
2014	Misc	`conf`	Adverse Drug Event-based Stratification of Tumor Mutations: A Case Study of Breast Cancer Patients Receiving Aromatase Inhibitors. AMIA Chen Wang, Michael T. Zimmermann, Naresh Prodduturi, Christopher G. Chute, Guoqian Jiang
2014	Misc	`conf`	An Automated Approach for Ranking Journals to Help in Clinician Decision Support. AMIA Siddhartha Jonnalagadda, Soheil Moosavinasab, Chinmoy Nath, Dingcheng Li, Christopher G. Chute, Hongfang Liu
2014	—	`conf`	Building a Semantic Web-based Metadata Repository for Facilitating Detailed Clinical Modeling in Cancer Genome Studies. SWAT4LS Guoqian Jiang, Deepak K. Sharma, Harold R. Solbrig, Cui Tao, Chunhua Weng, Christopher G. Chute
2014	—	`conf`	Cancer Based Pharmacogenomics Network for Drug Repurposing. PAKDD Workshops Liwei Wang, Hongfang Liu, Christopher G. Chute, Qian Zhu
2014	Misc	`conf`	Developing a Section Labeler for Clinical Documents. AMIA Peter J. Haug, Xinzi Wu, Jeffrey P. Ferraro, Guergana Savova, Stanley M. Huff, Christopher G. Chute
2014	Misc	`conf`	Evaluation of RxNorm for Medication Clinical Decision Support. AMIA Robert R. Freimuth, Kelly Wix, Qian Zhu, Mark Siska, Christopher G. Chute
2014	Misc	`conf`	Exploring the Pharmacogenomics Knowledge Base (PharmGKB) for Repositioning Breast Cancer Drugs by Leveraging Web Ontology Language (OWL) and Cheminformatics Approaches. Pacific Symposium on Biocomputing Qian Zhu, Cui Tao, Feichen Shen, Christopher G. Chute
2014	—	`conf`	Genetic testing knowledge base (GTKB) towards individualized genetic test recommendation - An experimental study. BIBM Qian Zhu, Hongfang Liu, Christopher G. Chute, Matthew Ferber
2014	J	`jnl`	Health data use, stewardship, and governance: ongoing gaps and challenges: a report from AMIA's 2012 Health Policy Meeting. J. Am. Medical Informatics Assoc. George Hripcsak, Meryl Bloomrosen, Patti Flatley Brennan, Christopher G. Chute, James J. Cimino, Don E. Detmer, Margo Edmunds, Peter J. Embí, Melissa M. Goldstein, William Ed Hammond, Gail M. Keenan, Steven E. Labkoff, Shawn P. Murphy, Charles Safran, Stuart M. Speedie, Howard R. Strasberg, Freda Temple, Adam B. Wilcox
2014	—	`conf`	ICD-11 and SNOMED CT Common Ontology: Circulatory System. MIE Jean Marie Rodrigues, Stefan Schulz, Alan L. Rector, Kent A. Spackman, Jane Millar, James R. Campbell, Bedirhan Üstün, Christopher G. Chute, Harold R. Solbrig, Vincenzo Della Mea, Kristina Brand Persson
2014	Misc	`conf`	Lexical Term Standardization of ICD-11 Using Semantic Web Technologies. AMIA Guoqian Jiang, Harold R. Solbrig, Bedirhan Üstün, Christopher G. Chute
2014	—	`conf`	Mining Severe Drug-Drug Interaction Adverse Events Using Semantic Web Technologies: A Case Study. PAKDD Workshops Guoqian Jiang, Hongfang Liu, Harold R. Solbrig, Christopher G. Chute
2014	J	`jnl`	Network-based analysis reveals distinct association patterns in a semantic MEDLINE-based drug-disease-gene network. J. Biomed. Semant. Yuji Zhang, Cui Tao, Guoqian Jiang, Asha A. Nair, Jian Su, Christopher G. Chute, Hongfang Liu
2014	—	`conf`	Profiling ICD-11 Terminological Content Using the Common Terminology Services 2 (CTS2) Standard. ICBO Guoqian Jiang, Harold R. Solbrig, Can Celik, Bedirhan Üstün, Christopher G. Chute
2014	J	`jnl`	Research and applications: MedXN: an open source medication extraction and normalization tool for clinical text. J. Am. Medical Informatics Assoc. Sunghwan Sohn, Cheryl Clark, Scott R. Halgrim, Sean P. Murphy, Christopher G. Chute, Hongfang Liu
2014	—	`conf`	Using semantic web technologies for quality measure phenotyping algorithm representation and automatic execution on EHR data. BHI Feichen Shen, Dingcheng Li, Hongfang Liu, Yugyung Lee, Jyotishman Pathak, Christopher G. Chute, Cui Tao
2014	—	`conf`	What's in a Class? Lessons Learnt from the ICD - SNOMED CT Harmonisation. MIE Stefan Schulz, Jean Marie Rodrigues, Alan L. Rector, Kent A. Spackman, James R. Campbell, Bedirhan Üstün, Christopher G. Chute, Harold R. Solbrig, Vincenzo Della Mea, Jane Millar, Kristina Brand Persson
2014	Misc	`conf`	iGenetics: An Individualized Genetic Test Recommendation System Based on EHRs. AMIA Qian Zhu, Hongfang Liu, Christopher G. Chute, Matthew Ferber
2013	—	`conf`	A Formal Model for RDF Dataset Constraints. JIST Harold R. Solbrig, Eric Prud'hommeaux, Christopher G. Chute, Jim Davies
2013	—	`conf`	A Semantic Web-Based Approach for Harvesting Multilingual Textual Definitions from Wikipedia to Support ICD-11 Revision. VDOS+DO@ICBO Guoqian Jiang, Harold R. Solbrig, Christopher G. Chute
2013	J	`jnl`	A common type system for clinical natural language processing. J. Biomed. Semant. Stephen T. Wu, Vinod Kaggal, Dmitriy Dligach, James J. Masanz, Pei J. Chen, Lee Becker, Wendy Webber Chapman, Guergana K. Savova, Hongfang Liu, Christopher G. Chute
2013	J	`jnl`	A semantic-web oriented representation of the clinical element model for secondary use of electronic health records data. J. Am. Medical Informatics Assoc. Cui Tao, Guoqian Jiang, Thomas A. Oniki, Robert R. Freimuth, Qian Zhu, Deepak K. Sharma, Jyotishman Pathak, Stanley M. Huff, Christopher G. Chute
2013	Misc	`conf`	Building A Platform for Supporting Clinical Study Meta-Data Standards Authoring Using Scalable Semantic Web Technologies. AMIA Guoqian Jiang, Harold R. Solbrig, Christopher G. Chute
2013	—	`conf`	Building a Knowledge Base of Severe Adverse Drug Events Based on AERS Reporting Data Using Semantic Web Technologies. MedInfo Guoqian Jiang, Liwei Wang, Hongfang Liu, Harold R. Solbrig, Christopher G. Chute
2013	Misc	`conf`	Clinical Drug Extraction and Normalization from Clinical Notes. AMIA Sunghwan Sohn, Cheryl Clark, Scott R. Halgrim, Sean P. Murphy, Christopher G. Chute, Hongfang Liu
2013	Misc	`conf`	Coreference Resolution from Medical Corpus with Topic Modeling. AMIA Dingcheng Li, Liwei Wang, Cui Tao, Christopher G. Chute, Hongfang Liu
2013	J	`jnl`	Disambiguation of PharmGKB drug-disease relations with NDF-RT and SPL. J. Biomed. Informatics Qian Zhu, Robert R. Freimuth, Jyotishman Pathak, Matthew J. Durski, Christopher G. Chute
2013	—	`conf`	Do we need a Common Ontology between ICD 11 and SNOMED CT to ensure Seamless Re-Use and Semantic Interoperability? MedInfo Jean Marie Rodrigues, Stefan Schulz, Alan L. Rector, Kent A. Spackman, Bedirhan Üstün, Christopher G. Chute, Vincenzo Della Mea, Jane Millar, Kristina Brand Persson, Dipak Kalra
2013	J	`jnl`	Harmonization and semantic annotation of data dictionaries from the Pharmacogenomics Research Network: A case study. J. Biomed. Informatics Qian Zhu, Robert R. Freimuth, Zonghui Lian, Scott Bauer, Jyotishman Pathak, Cui Tao, Matthew J. Durski, Christopher G. Chute
2013	Misc	`conf`	Introduction and Implementation of Common Terminology Services 2 (CTS2). AMIA Cui Tao, Harold R. Solbrig, Craig Stancl, Kevin J. Peterson, Cory M. Endle, Scott Bauer, Deepak K. Sharma, Christopher G. Chute
2013	—	`conf`	Isosemantic Rendering of Clinical Information Using Formal Ontologies and RDF. MedInfo Catalina Martínez-Costa, Diego Boscá, María Del Carmen Legaz-García, Cui Tao, Jesualdo Tomás Fernández-Breis, Stefan Schulz, Christopher G. Chute
2013	Misc	`conf`	Medication Extraction and Normalization from Clinical Notes. AMIA Sunghwan Sohn, Cheryl Clark, Scott R. Halgrim, Sean P. Murphy, Christopher G. Chute, Hongfang Liu
2013	—	`conf`	Mining Anti-coagulant Drug-Drug Interactions from Electronic Health Records Using Linked Data. DILS Jyotishman Pathak, Richard C. Kiefer, Christopher G. Chute
2013	Misc	`conf`	Mining Drug-Drug Interaction Patterns from Linked Clinical Data. AMIA Jyotishman Pathak, Richard C. Kiefer, Christopher G. Chute
2013	—	`conf`	Mining drug-drug interaction patterns from linked data: A case study for Warfarin, Clopidogrel, and Simvastatin. BIBM Jyotishman Pathak, Richard C. Kiefer, Christopher G. Chute
2013	—	`conf`	Ontology-based Temporal Analysis for Medical Device Adverse Event - A Use Case Study on Late Stent Thrombosis. SWAT4LS Kimberly Clark, Deepak K. Sharma, Rui Qin, Christopher G. Chute, Cui Tao
2013	Misc	`conf`	PhenotypePortal: An Open-Source Library and Platform for Authoring, Executing and Visualization of Electronic Health Records Driven Phenotyping Algorithms. AMIA Jyotishman Pathak, Cory M. Endle, Dale Suesse, Kevin J. Peterson, Craig Stancl, Dingcheng Li, Christopher G. Chute
2013	—	`conf`	Phenotyping on EHR Data Using OWL and Semantic Web Technologies. ICSH Cui Tao, Dingcheng Li, Feichen Shen, Zonghui Lian, Jyotishman Pathak, Hongfang Liu, Christopher G. Chute
2013	Misc	`conf`	Prioritize journals relevant to a clinical topic: A survey of US cardiologists about heart failure. AMIA Siddhartha Jonnalagadda, Christopher G. Chute, Hongfang Liu
2013	—	`conf`	Prioritizing journals relevant to a topic for addressing clinicians' information needs. BIBM Siddhartha Jonnalagadda, Soheil Moosavinasab, Dingcheng Li, Martin D. Abel, Christopher G. Chute, Hongfang Liu
2013	Misc	`conf`	Psychological Assessment Instruments: A Coverage Analysis Using SNOMED CT, LOINC and QS Terminology. AMIA Piper A. Svensson-Ranallo, Terrence Adam, Katharine J. Nelson, Robert Krueger, Martin LaVenture, Christopher G. Chute
2013	J	`jnl`	Semantator: Semantic annotator for converting biomedical text to linked data. J. Biomed. Informatics Cui Tao, Dezhao Song, Deepak K. Sharma, Christopher G. Chute
2013	—	`conf`	Sharing Ontology between ICD 11 and SNOMED CT will enable Seamless Re-use and Semantic Interoperability. MedInfo Jean Marie Rodrigues, Stefan Schulz, Alan L. Rector, Kent A. Spackman, Bedirhan Üstün, Christopher G. Chute, Vincenzo Della Mea, Jane Millar, Kristina Brand Persson
2013	—	`conf`	Standardized Drug and Pharmacological Class Network Construction. VDOS+DO@ICBO Qian Zhu, Guoqian Jiang, Liwei Wang, Christopher G. Chute
2013	—	`conf`	Standardized Drug and Pharmacological Class Network Construction. MedInfo Qian Zhu, Guoqian Jiang, Liwei Wang, Christopher G. Chute
2013	J	`jnl`	Terminology representation guidelines for biomedical ontologies in the semantic web notations. J. Biomed. Informatics Cui Tao, Jyotishman Pathak, Harold R. Solbrig, Wei-Qi Wei, Christopher G. Chute
2013	J	`jnl`	The absence of longitudinal data limits the accuracy of high-throughput clinical phenotyping for identifying type 2 diabetes mellitus subjects. Int. J. Medical Informatics Wei-Qi Wei, Cynthia L. Leibson, Jeanine E. Ransom, Abel N. Kho, Christopher G. Chute
2013	—	`conf`	Towards assigning references using semantic, journal and citation relevance. BIBM Dingcheng Li, Hongfang Liu, Christopher G. Chute, Siddhartha Jonnalagadda
2013	—	`conf`	Using Linked Data for Mining Drug-Drug Interactions in Electronic Health Records. MedInfo Jyotishman Pathak, Richard C. Kiefer, Christopher G. Chute
2013	—	`conf`	Using Semantic Web Techologies for the Generation of Domain Templates to Support Clinical Study Meta-Data. SWAT4LS Guoqian Jiang, Julie Evans, Cory M. Endle, Harold R. Solbrig, Christopher G. Chute
2013	J	`jnl`	Using Semantic Web technology to support icd-11 textual definitions authoring. J. Biomed. Semant. Guoqian Jiang, Harold R. Solbrig, Christopher G. Chute
2013	Misc	`conf`	Using standardized clinical data modeling and knowledge representation to compute pharmacogenomic data elements. AMIA Qian Zhu, Jyotishman Pathak, Robert R. Freimuth, Christopher G. Chute
2012	—	`conf`	(1) Obstacles and options for big-data applications in biomedicine: The role of standards and normalizations. BIBM Christopher G. Chute
2012	Misc	`conf`	A Proposal Provenance Model for ICD-11 Revision Beta Phase. AMIA Guoqian Jiang, Cory M. Endle, Harold R. Solbrig, Christopher G. Chute
2012	—	`conf`	A Semantic-Web Oriented Representation of Clinical Element Model for Secondary Use of Electronic Healthcare Data. HISB Cui Tao, Guoqian Jiang, Thomas A. Oniki, Robert R. Freimuth, Jyotishman Pathak, Qian Zhu, Deepak K. Sharma, Stanley M. Huff, Christopher G. Chute
2012	Misc	`conf`	A Standardized Drug and Drug Class Universal Network. AMIA Qian Zhu, Guoqian Jiang, Christopher G. Chute
2012	—	`conf`	Applying linked data principles to represent patient's electronic health records at Mayo clinic: a case report. IHI Jyotishman Pathak, Richard C. Kiefer, Christopher G. Chute
2012	J	`jnl`	Applying semantic web technologies for phenome-wide scan using an electronic health record linked Biobank. J. Biomed. Semant. Jyotishman Pathak, Richard C. Kiefer, Suzette J. Bielinski, Christopher G. Chute
2012	J	`jnl`	Automated discovery of drug treatment patterns for endocrine therapy of breast cancer within an electronic medical record. J. Am. Medical Informatics Assoc. Guergana K. Savova, Janet E. Olson, Sean P. Murphy, Victoria L. Cafourek, Fergus J. Couch, Matthew P. Goetz, James N. Ingle, Vera J. Suman, Christopher G. Chute, Richard M. Weinshilboum
2012	—	`conf`	Building Standardized Semantic Web RESTful Services to Support ICD-11 Revision. SWAT4LS Guoqian Jiang, Harold R. Solbrig, Christopher G. Chute
2012	J	`jnl`	Building a robust, scalable and standards-driven infrastructure for secondary use of EHR data: The SHARPn project. J. Biomed. Informatics Susan Rea, Jyotishman Pathak, Guergana K. Savova, Thomas A. Oniki, Les Westberg, Calvin E. Beebe, Cui Tao, Craig G. Parker, Peter J. Haug, Stanley M. Huff, Christopher G. Chute
2012	Misc	`conf`	Common Terminology Services 2 (CTS2) for Biomedical Community. AMIA Cui Tao, Harold R. Solbrig, Pradip Kanjamala, Kevin J. Peterson, Craig Stancle, Christopher G. Chute
2012	Misc	`conf`	Comprehensive, Population-based, Peer-to-Peer Health Information Exchange and Clinical Data Repository Creation among Rural Practices and County Public Health Departments: The SE MN Beacon Community. AMIA Christopher G. Chute, Alex Alexander, Timothy Peters, Kris Riess, Rod Hughbanks, Lacey Hart, Larry Lemmon, Danial Jensen, Calvin E. Beebe
2012	J	`jnl`	Cross-terminology mapping challenges: A demonstration using medication terminological systems. J. Biomed. Informatics Himali Saitwal, David Qing, Stephen Jones, Elmer V. Bernstam, Christopher G. Chute, Todd R. Johnson
2012	J	`jnl`	Erratum to "Cross-terminology mapping challenges: A demonstration using medication terminological systems" [J. Biomed. Inform. (2012) 613-625]. J. Biomed. Informatics Himali Saitwal, David Qing, Stephen Jones, Elmer V. Bernstam, Christopher G. Chute, Todd R. Johnson
2012	—	`conf`	Harmonization of detailed clinical models with clinical study data standard. MIX-HS Guoqian Jiang, Julie Evans, Thomas A. Oniki, Joey Coyle, Landen Bain, Stanley M. Huff, Rebecca Daniels Kush, Christopher G. Chute
2012	J	`jnl`	Impact of data fragmentation across healthcare centers on the accuracy of a high-throughput clinical phenotyping algorithm for specifying subjects with type 2 diabetes mellitus. J. Am. Medical Informatics Assoc. Wei-Qi Wei, Cynthia L. Leibson, Jeanine E. Ransom, Abel N. Kho, Pedro J. Caraballo, High Seng Chai, Barbara P. Yawn, Jennifer A. Pacheco, Christopher G. Chute
2012	Misc	`conf`	Integrating VA's NDF-RT Drug Terminology with PharmGKB: Preliminary Results. Pacific Symposium on Biocomputing Jyotishman Pathak, Laura C. Weiss, Matthew J. Durski, Qian Zhu, Robert R. Freimuth, Christopher G. Chute
2012	Misc	`conf`	Mining Genotype-Phenotype Associations from Electronic Health Records and Biorepositories using Semantic Web Technologies. AMIA Jyotishman Pathak, Richard C. Kiefer, Robert R. Freimuth, Suzette J. Bielinski, Christopher G. Chute
2012	Misc	`conf`	Mining the Human Phenome using Semantic Web Technologies: A Case Study for Type 2 Diabetes. AMIA Jyotishman Pathak, Richard C. Kiefer, Suzette J. Bielinski, Christopher G. Chute
2012	—	`conf`	Modeling UIMA type system using web ontology language: towards interoperability among UIMA-based NLP tools. MIX-HS Hongfang Liu, Stephen T. Wu, Cui Tao, Christopher G. Chute
2012	Misc	`conf`	Modeling and Executing Electronic Health Records Driven Phenotyping Algorithms using the NQF Quality Data Model and JBoss® Drools Engine. AMIA Dingcheng Li, Sahana Murthy, Davide Sottara, Christopher G. Chute, Stanley M. Huff, Jyotishman Pathak, Cory M. Endle, Dale Suesse, Craig Stancle
2012	—	`conf`	Ontology-Based Temporal Relation Modeling with MapReduce Latent Dirichlet Allocations for Big EHR Data. CGC Dingcheng Li, Cui Tao, Hongfang Liu, Christopher G. Chute
2012	J	`jnl`	Ontology-based time information representation of vaccine adverse events in VAERS for temporal analysis. J. Biomed. Semant. Cui Tao, Yongqun He, Hannah Yang, Gregory A. Poland, Christopher G. Chute
2012	—	`conf`	Optimizing semantic MEDLINE for translational science studies using semantic web technologies. MIX-HS Cui Tao, Yuji Zhang, Guoqian Jiang, Matt-Mouley Bouamrane, Christopher G. Chute
2012	J	`jnl`	Profiling structured product labeling with NDF-RT and RxNorm. J. Biomed. Semant. Qian Zhu, Guoqian Jiang, Christopher G. Chute
2012	J	`jnl`	Quality evaluation of value sets from cancer study common data elements using the UMLS semantic groups. J. Am. Medical Informatics Assoc. Guoqian Jiang, Harold R. Solbrig, Christopher G. Chute
2012	—	`conf`	Systematic Analysis of Cross-Institutional Medication Description Patterns in Clinical Notes. HISB Sunghwan Sohn, Sean P. Murphy, Siddhartha Jonnalagadda, Kavishwar B. Wagholikar, Stephen T. Wu, Christopher G. Chute, Hongfang Liu, Scott R. Halgrim
2012	J	`jnl`	The National Center for Biomedical Ontology. J. Am. Medical Informatics Assoc. Mark A. Musen, Natalya Fridman Noy, Nigam H. Shah, Patricia L. Whetzel, Christopher G. Chute, Margaret-Anne D. Storey, Barry Smith
2012	Misc	`conf`	The Pan-SHARP Project: An Interdisciplinary approach to Medication Reconciliation. AMIA Jorge R. Herskovic, Christopher G. Chute, Julian M. Goldman, Bernie Ács, David A. Kreda
2012	Misc	`conf`	Towards a semantic lexicon for clinical natural language processing. AMIA Hongfang Liu, Stephen T. Wu, Dingcheng Li, Siddhartha Jonnalagadda, Sunghwan Sohn, Kavishwar B. Wagholikar, Peter J. Haug, Stanley M. Huff, Christopher G. Chute
2012	—	`conf`	Towards event sequence representation, reasoning and visualization for EHR data. IHI Cui Tao, Krist Wongsuphasawat, Kimberly Clark, Catherine Plaisant, Ben Shneiderman, Christopher G. Chute
2012	Misc	`conf`	Tracking Immigrant Health with Natural Language Processing. AMIA Stephen T. Wu, Mark Wieland, Vinod Kaggal, Hongfang Liu, Christopher G. Chute
2012	J	`jnl`	Unified Medical Language System term occurrences in clinical notes: a large-scale corpus analysis. J. Am. Medical Informatics Assoc. Stephen T. Wu, Hongfang Liu, Dingcheng Li, Cui Tao, Mark A. Musen, Christopher G. Chute, Nigam H. Shah
2012	J	`jnl`	Use of diverse electronic medical record systems to identify genetic risk for type 2 diabetes within a genome-wide association study. J. Am. Medical Informatics Assoc. Abel N. Kho, M. Geoffrey Hayes, Laura Rasmussen-Torvik, Jennifer A. Pacheco, William K. Thompson, Loren L. Armstrong, Joshua C. Denny, Peggy L. Peissig, Aaron W. Miller, Wei-Qi Wei, Suzette J. Bielinski, Christopher G. Chute, Cynthia L. Leibson, Gail P. Jarvik, David R. Crosslin, Christopher S. Carlson, Katherine M. Newton, Wendy A. Wolf, Rex L. Chisholm, William L. Lowe
2012	Misc	`conf`	Using Electronic Health Records to Identify Patient Cohorts for Drug-Induced Thrombocytopenia, Neutropenia and Liver Injury. AMIA Jyotishman Pathak, Aref Al-Kali, Jayant Talwalkar, Abel N. Kho, Joshua C. Denny, Sean P. Murphy, Kevin Bruce, Matthew J. Durski, Christopher G. Chute
2012	Misc	`conf`	Using PheWAS to Assess Pleiotropy of Genetic Risk Scores for Rheumatoid Arthritis and Coronary Artery Disease in the eMERGE Network. AMIA Robert J. Carroll, Katherine P. Liao, Anne E. Eyler, Lisa Bastarache, Dana C. Crawford, Peggy L. Peissig, Jyotishman Pathak, David Carrell, Abel N. Kho, Rongling Li, Daniel R. Masys, Gail P. Jarvik, Christopher G. Chute, Rex L. Chisholm, Eric B. Larson, Catherine A. McCarty, Iftikhar J. Kullo
2012	Misc	`conf`	Visualization and Reporting of Results for Electronic Health Records Driven Phenotyping using the Open-Source popHealth Platform. AMIA Cory M. Endle, Sahana Murthy, Dale Suesse, Craig Stancle, Dingcheng Li, Lacey Hart, Christopher G. Chute, Jyotishman Pathak
2011	—	`conf`	A Case Study of ICD-11 Anatomy Value Set Extraction from SNOMED CT. ICBO Guoqian Jiang, Harold R. Solbrig, Robert J. G. Chalmers, Kent A. Spackman, Alan L. Rector, Christopher G. Chute
2011	—	`conf`	An Ontological Representation of Adverse Drug Events. ICBO Guoqian Jiang, Jon D. Duke, Jyotishman Pathak, Christopher G. Chute
2011	—	`conf`	Bioportal: Ontologies and Integrated Data Resources at the Click of a Mouse. ICBO Patricia L. Whetzel, Natasha F. Noy, Nigam Shah, Paul R. Alexander, Michael Dorf, Ray W. Fergerson, Margaret-Anne D. Storey, Barry Smith, Christopher G. Chute, Mark A. Musen
2011	J	`jnl`	Drug side effect extraction from clinical narratives of psychiatry and psychology patients. J. Am. Medical Informatics Assoc. Sunghwan Sohn, Jean-Pierre A. Kocher, Christopher G. Chute, Guergana K. Savova
2011	J	`jnl`	Letter: Further revamping VA's NDF-RT drug terminology for clinical research. J. Am. Medical Informatics Assoc. Jyotishman Pathak, Christopher G. Chute
2011	J	`jnl`	Mapping clinical phenotype data elements to standardized metadata repositories and controlled terminologies: the eMERGE Network experience. J. Am. Medical Informatics Assoc. Jyotishman Pathak, Janey Wang, Sudha Kashyap, Melissa A. Basford, Rongling Li, Daniel R. Masys, Christopher G. Chute
2011	—	`conf`	Proposed SKOS Extensions for BioPortal Terminology Services. JIST Cui Tao, Natalya Fridman Noy, Harold R. Solbrig, Nigam H. Shah, Mark A. Musen, Christopher G. Chute
2011	J	`jnl`	Quality evaluation of cancer study Common Data Elements using the UMLS Semantic Network. J. Biomed. Informatics Guoqian Jiang, Harold R. Solbrig, Christopher G. Chute
2011	—	`conf`	The linked clinical data project: applying semantic web technologies for clinical and translational research using electronic medical records. SWAT4LS Jyotishman Pathak, Richard C. Kiefer, Christopher G. Chute
2011	—	`conf`	Toward Answering Time-Related Questions from Adverse Event Reports Using Ontology-Based Approaches. ICBO Cui Tao, Guoqian Jiang, Kimberly Clark, Deepak K. Sharma, Christopher G. Chute
2011	J	`jnl`	Towards a framework for developing semantic relatedness reference standards. J. Biomed. Informatics Serguei V. S. Pakhomov, Ted Pedersen, Bridget T. McInnes, Genevieve B. Melton, Alexander Ruggieri, Christopher G. Chute
2011	—	`conf`	Using RxNorm to Extract Medication Data from Electronic Health Records in the Rochester Epidemiology Project. ICBO Jyotishman Pathak, Shawn P. Murphy, Brian N. Willaert, Hilal M. Kremers, Christopher G. Chute, Barbara P. Yawn, Walter A. Rocca
2011	—	`conf`	Using semantic web technology to support ICD-11 textual definitions authoring. SWAT4LS Guoqian Jiang, Harold R. Solbrig, Christopher G. Chute
2010	J	`jnl`	An analytical approach to characterize morbidity profile dissimilarity between distinct cohorts using electronic medical records. J. Biomed. Informatics Jonathan S. Schildcrout, Melissa A. Basford, Jill M. Pulley, Daniel R. Masys, Dan M. Roden, Deede Wang, Christopher G. Chute, Iftikhar J. Kullo, David Carrell, Peggy L. Peissig, Abel N. Kho, Joshua C. Denny
2010	J	`jnl`	Analyzing categorical information in two publicly available drug terminologies: RxNorm and NDF-RT. J. Am. Medical Informatics Assoc. Jyotishman Pathak, Christopher G. Chute
2010	J	`jnl`	Comparing and evaluating terminology services application programming interfaces: RxNav, UMLSKS and LexBIG. J. Am. Medical Informatics Assoc. Jyotishman Pathak, Lee B. Peters, Christopher G. Chute, Olivier Bodenreider
2010	J	`jnl`	Leveraging informatics for genetic studies: use of the electronic medical record to enable a genome-wide association study of peripheral arterial disease. J. Am. Medical Informatics Assoc. Iftikhar J. Kullo, Jin Fan, Jyotishman Pathak, Guergana K. Savova, Zeenat Ali, Christopher G. Chute
2010	J	`jnl`	Mayo clinical Text Analysis and Knowledge Extraction System (cTAKES): architecture, component evaluation and applications. J. Am. Medical Informatics Assoc. Guergana K. Savova, James J. Masanz, Philip V. Ogren, Jiaping Zheng, Sunghwan Sohn, Karin Kipper Schuler, Christopher G. Chute
2010	J	`jnl`	The Enterprise Data Trust at Mayo Clinic: a semantically integrated warehouse of biomedical data. J. Am. Medical Informatics Assoc. Christopher G. Chute, Scott A. Beck, Thomas B. Fisk, David N. Mohr
2010	—	`conf`	Time-Oriented Question Answering from Clinical Narratives Using Semantic-Web Techniques. ISWC (2) Cui Tao, Harold R. Solbrig, Deepak K. Sharma, Wei-Qi Wei, Guergana K. Savova, Christopher G. Chute
2009	J	`jnl`	BioPortal: ontologies and integrated data resources at the click of a mouse. Nucleic Acids Res. Natalya Fridman Noy, Nigam H. Shah, Patricia L. Whetzel, Benjamin Dai, Michael Dorf, Nicholas Griffith, Clément Jonquet, Daniel L. Rubin, Margaret-Anne D. Storey, Christopher G. Chute, Mark A. Musen
2009	J	`jnl`	Formalizing ICD coding rules using Formal Concept Analysis. J. Biomed. Informatics Guoqian Jiang, Jyotishman Pathak, Christopher G. Chute
2009	J	`jnl`	Implementation Brief: LexGrid: A Framework for Representing, Storing, and Querying Biomedical Terminologies from Simple to Sublime. J. Am. Medical Informatics Assoc. Jyotishman Pathak, Harold R. Solbrig, James D. Buntrock, Thomas M. Johnson, Christopher G. Chute
2009	J	`jnl`	Survey of modular ontology techniques and their applications in the biomedical domain. Integr. Comput. Aided Eng. Jyotishman Pathak, Thomas M. Johnson, Christopher G. Chute
2009	J	`jnl`	Viewpoint Paper: Auditing the Semantic Completeness of SNOMED CT Using Formal Concept Analysis. J. Am. Medical Informatics Assoc. Guoqian Jiang, Christopher G. Chute
2008	—	`conf`	Adopting Graph Traversal Techniques for Context-Driven Value Sets Extraction from Biomedical Knowledge Sources. ICSC Jyotishman Pathak, Guoqian Jiang, Sridhar O. Dwarkanath, James D. Buntrock, Christopher G. Chute
2008	—	`conf`	Comparing the Effects of Two Semantic Terminology Models on Classification of Clinical Notes: A Study of Heart Murmur Findings. KR-MED Guoqian Jiang, Christopher G. Chute
2008	B	`conf`	Constructing Evaluation Corpora for Automated Clinical Named Entity Recognition. LREC Philip V. Ogren, Guergana K. Savova, Christopher G. Chute
2008	Misc	`conf`	Designing and testing computer based screening engine for severe sepsis/septic shock. AMIA Vitaly Herasevich, Bekele Afessa, Christopher G. Chute, Ognjen Gajic
2008	J	`jnl`	Editorial Comments: Biosurveillance, Classification, and Semantic Health Technologies. J. Am. Medical Informatics Assoc. Christopher G. Chute
2008	—	`conf`	LexSearch: An Approach for Leveraging Semantic Annotations to Searching Ontologies. AAAI Spring Symposium: Semantic Scientific Knowledge Integration Jyotishman Pathak, James D. Buntrock, Christopher G. Chute
2008	Misc	`conf`	LexValueSets: An Approach for Context-Driven Value Sets Extraction. AMIA Jyotishman Pathak, Guoqian Jiang, Sridhar O. Dwarkanath, James D. Buntrock, Christopher G. Chute
2008	Misc	`conf`	Modular ontology techniques and their applications in the biomedical domain. IRI Jyotishman Pathak, Thomas M. Johnson, Christopher G. Chute
2008	J	`jnl`	Technical Brief: Mayo Clinic NLP System for Patient Smoking Status Identification. J. Am. Medical Informatics Assoc. Guergana K. Savova, Philip V. Ogren, Patrick H. Duffy, James D. Buntrock, Christopher G. Chute
2008	J	`jnl`	Word sense disambiguation across two domains: Biomedical literature and clinical notes. J. Biomed. Informatics Guergana K. Savova, Anni Coden, Igor L. Sominsky, Rie Johnson, Philip V. Ogren, Piet C. de Groen, Christopher G. Chute
2008	Misc	`conf`	caBIG™ Compatibility Review System: Software to Support the Evaluation of Applications Using Defined Interoperability Criteria. AMIA Robert R. Freimuth, Michael W. Schauer, Preeti Lodha, Poornima Govindrao, Rakesh Nagarajan, Christopher G. Chute
2007	J	`jnl`	Measures of semantic similarity and relatedness in the biomedical domain. J. Biomed. Informatics Ted Pedersen, Serguei V. S. Pakhomov, Siddharth Patwardhan, Christopher G. Chute
2006	Misc	`conf`	A Comparative Study of Supervised Learning as Applied to Acronym Expansion in Clinical Reports. AMIA Mahesh Joshi, Serguei V. S. Pakhomov, Ted Pedersen, Christopher G. Chute
2006	Misc	`conf`	A Hybrid Approach to Determining Modification of Clinical Diagnoses. AMIA Serguei V. S. Pakhomov, Christopher G. Chute
2006	A*	`conf`	An End-to-End Supervised Target-Word Sense Disambiguation System. AAAI Mahesh Joshi, Serguei V. S. Pakhomov, Ted Pedersen, Richard Maclin, Christopher G. Chute
2006	Misc	`conf`	Building and Evaluating Annotated Corpora for Medical NLP Systems. AMIA Philip V. Ogren, Guergana Savova, James D. Buntrock, Christopher G. Chute
2006	J	`jnl`	Developing a corpus of clinical notes manually annotated for part-of-speech. Int. J. Medical Informatics Serguei V. S. Pakhomov, Anni Coden, Christopher G. Chute
2006	J	`jnl`	Research Paper: Automating the Assignment of Diagnosis Codes to Patient Encounters Using Example-based and Machine Learning Techniques. J. Am. Medical Informatics Assoc. Serguei V. S. Pakhomov, James D. Buntrock, Christopher G. Chute
2005	Misc	`conf`	Abbreviation and Acronym Disambiguation in Clinical Discourse. AMIA Serguei Pakhomov, Ted Pedersen, Christopher G. Chute
2005	J	`jnl`	Domain-specific language models and lexicons for tagging. J. Biomed. Informatics Anni Coden, Sergey V. Pakhomov, Rie Kubota Ando, Patrick H. Duffy, Christopher G. Chute
2005	Misc	`conf`	Frame Semantics and the Domain of Functioning, Disability and Health. AMIA Guergana Savova, Marcelline R. Harris, Serguei Pakhomov, Christopher G. Chute
2005	Misc	`conf`	LexGrid Editor: Terminology Authoring for the Lexical Grid. AMIA Thomas M. Johnson, Harold R. Solbrig, Daniel C. Armbrust, Christopher G. Chute
2005	J	`jnl`	Prospective recruitment of patients with congestive heart failure using an ad-hoc binary classifier. J. Biomed. Informatics Sergey V. Pakhomov, James D. Buntrock, Christopher G. Chute
2005	Misc	`conf`	Representing Lexical Components of Medical Terminologies in OWL. AMIA Kaustubh Supekar, Christopher G. Chute, Harold R. Solbrig
2004	—	`conf`	A Corpus Driven Approach Applying the "Frame Semantic" Method for Modeling Functional Status Terminology. MedInfo Alexander P. Ruggieri, Serguei V. S. Pakhomov, Christopher G. Chute
2004	—	`conf`	Creating a Test Corpus of Clinical Notes Manually Tagged for Part-of-Speech Information. NLPBA/BioNLP Serguei Pakhomov, Anni Coden, Christopher G. Chute
2004	—	`conf`	Modeling Guidelines for Integration into Clinical Workflow. MedInfo Samson W. Tu, Mark A. Musen, Ravi D. Shankar, James R. Campbell, Karen M. Hrabak, James C. McClay, Stanley M. Huff, Robert C. McClure, Craig G. Parker, Roberto A. Rocha, Robert M. Abarbanel, Nick Beard, Julie Glasgow, Guy Mansfield, Prabhu Ram, Qin Ye, Eric Mays, Tony Weida, Christopher G. Chute, Kevin McDonald, David N. Mohr, Mark A. Nyman, Sidna M. Scheitel, Harold Solbrig, David A. Zill, Mary K. Goldstein
2004	—	`conf`	Terminology Access Methods Leveraging LDAP Resources. MedInfo Harold R. Solbrig, Christopher G. Chute
2004	—	`conf`	Using Compund Codes for Automatic Classification of Clinical Diagnoses. MedInfo Serguei V. S. Pakhomov, James D. Buntrock, Christopher G. Chute
2003	Misc	`conf`	A Data-Driven Approach for Extracting "the Most Specific Term" for Ontology Development. AMIA Guergana K. Savova, Marcelline R. Harris, Thomas M. Johnson, Serguei V. S. Pakhomov, Christopher G. Chute
2003	J	`jnl`	A term extraction tool for expanding content in the domain of functioning, disability, and health: proof of concept. J. Biomed. Informatics Marcelline R. Harris, Guergana K. Savova, Thomas M. Johnson, Christopher G. Chute
2003	—	`conf`	Identification of Patients with Congestive Heart Failure using a Binary Classifier: A Case Study. BioNLP@ACL Sergey V. Pakhomov, James D. Buntrock, Christopher G. Chute
2003	Misc	`conf`	Integrating Pharmacokinetics Knowledge into a Drug Ontology As an Extension to Support Pharmacogenomics. AMIA Christopher G. Chute, John S. Carter, Mark S. Tuttle, Margaret W. Haber, Steven H. Brown
2003	Misc	`conf`	Testing the Generalizability of the ISO Model for Nursing Diagnoses. AMIA Marcelline R. Harris, Hyeoneui Kim, Lori Rhudy, Guergana Savova, Christopher G. Chute
2003	Misc	`conf`	The Open Terminology Services (OTS) Project: AMIA 2003 Open Source Expo. AMIA Harold R. Solbrig, Daniel C. Armbrust, Christopher G. Chute
2002	Misc	`conf`	An evaluation of unmediated versus mediated retrieval services. AMIA James D. Buntrock, Christopher G. Chute
2002	Misc	`conf`	Maximum entropy modeling for mining patient medication status from free text. AMIA Serguei V. S. Pakhomov, Alexander Ruggieri, Christopher G. Chute
2002	Misc	`conf`	The horizontal and vertical nature of patient phenotype retrieval: new directions for clinical text processing. AMIA Christopher G. Chute
2001	Misc	`conf`	An assessment of cancer clinical trials vocabulary and IT infrastructure in the U.S. AMIA K. Gwaltney, Christopher G. Chute, Douglas Hageman, Warren A. Kibbe, Kathleen A. McCormick, Dianne M. Reeves, Lawrence W. Wright
2001	—	`conf`	Charting the Future of Public Health Informatics. MedInfo William A. Yasnoff, Christopher G. Chute, Jean-Raoul Scherrer, Didier Pittet
2001	Misc	`conf`	Expression of a domain ontology model in unified modeling language for the World Health Organization International classification of impairment, disability, and handicap, version 2. AMIA Alexander Ruggieri, Peter L. Elkin, Harold R. Solbrig, Christopher G. Chute
2001	—	`conf`	Guideline for Health Informatics: Controlled Health Vocabularies - Vocabulary Structure and High-level Indicators. MedInfo Peter L. Elkin, Steven H. Brown, Christopher G. Chute
2001	—	`conf`	Natural Language Processing, Medical Terminologies, and Ontological Issues for Patient Records and Biomedical Knowledge. MedInfo Robert H. Baud, Stephen B. Johnson, Christopher G. Chute, Olivier Bodenreider, Jeremy Rogers, Anita Burgun
2001	—	`conf`	The Patient Record in Cancer Care. MedInfo Marion J. Ball, John S. Silva, Hans Peterson, Christopher G. Chute
2000	Misc	`conf`	A formal approach to integrating synonyms with a reference terminology. AMIA Harold R. Solbrig, Peter L. Elkin, Philip V. Ogren, Christopher G. Chute
2000	Misc	`conf`	A randomized controlled trial of concept based indexing of Web page content. AMIA Peter L. Elkin, Alexander Ruggieri, Larry Bergstrom, Brent A. Bauer, Mark Lee, Philip V. Ogren, Christopher G. Chute
2000	Misc	`conf`	Representation by standard terminologies of health status concepts contained in two health status assessment instruments used in rheumatic disease management. AMIA Alexander Ruggieri, Peter L. Elkin, Christopher G. Chute
2000	J	`jnl`	Review: Embedded Structures and Representation of Nursing Knowledge. J. Am. Medical Informatics Assoc. Marcelline R. Harris, Judith R. Graves, Harold R. Solbrig, Peter L. Elkin, Christopher G. Chute
2000	Misc	`conf`	The content coverage and organizational structure of terminologies: the example of postoperative pain. AMIA Marcelline R. Harris, Judith R. Graves, Linda Herrick, Peter L. Elkin, Christopher G. Chute
2000	J	`jnl`	Viewpoint: Clinical Classification and Terminology: Some History and Current Observations. J. Am. Medical Informatics Assoc. Christopher G. Chute
1999	Misc	`conf`	A large-scale evaluation of terminology integration characteristics. AMIA Furman S. McDonald, Christopher G. Chute, Philip V. Ogren, Dietlind Wahner-Roedler, Peter L. Elkin
1999	Misc	`conf`	A randomized double-blind controlled trial of automated term dissection. AMIA Peter L. Elkin, Kent R. Bailey, Philip V. Ogren, Brent A. Bauer, Christopher G. Chute
1999	Misc	`conf`	Barriers to the clinical implementation of compositionality. AMIA Lawrence K. McKnight, Peter L. Elkin, Philip V. Ogren, Christopher G. Chute
1999	Misc	`conf`	Desiderata for a clinical terminology server. AMIA Christopher G. Chute, Peter L. Elkin, David D. Sherertz, Mark S. Tuttle
1999	Misc	`conf`	Detailed content and terminological properties of DSM-IV. AMIA Dermot Dunne, Christopher G. Chute
1999	Misc	`conf`	Towards Unambiguous Representation of Nursing-Sensitive Concepts. AMIA Marcelline R. Harris, Christopher G. Chute
1998	Misc	`conf`	A Java-Based Interface for Medical Research Project Classification Using Metaphrase. AMIA Qiang Liu, James D. Buntrock, Douglas L. Crowson, Mark S. Tuttle, Peter L. Elkin, Christopher G. Chute
1998	Misc	`conf`	A Java-Based Tool for Entry of a Medical Problem List, Which Accesses a Remote Large-Scale Enterprise Vocabulary Server. AMIA Peter L. Elkin, Mark S. Tuttle, Kevin Keck, Geoffrey E. Atkin, Christopher G. Chute
1998	Misc	`conf`	A clinical terminology in the post modern era: pragmatic problem list development. AMIA Christopher G. Chute, Peter L. Elkin, Susan H. Fenton, Geoffrey E. Atkin
1998	Misc	`conf`	A randomized controlled trial of automated term composition. AMIA Peter L. Elkin, Kent R. Bailey, Christopher G. Chute
1998	J	`jnl`	Position Paper: A Framework for Comprehensive Health Terminology Systems in the United States: Development Guidelines, Criteria for Selection, and Public Policy Implications. J. Am. Medical Informatics Assoc. Christopher G. Chute, Simon P. Cohn, James R. Campbell
1998	Misc	`conf`	The Copernican era of healthcare terminology: a re-centering of health information systems. AMIA Christopher G. Chute
1998	—	`conf`	The Role of Compositionality in Standardized Problem List Generation. MedInfo Peter L. Elkin, Mark S. Tuttle, Kevin Keck, Keith E. Campbell, Geoffrey E. Atkin, Christopher G. Chute
1997	Misc	`conf`	A clinically derived terminology: qualification to reduction. AMIA Christopher G. Chute, Peter L. Elkin
1997	Misc	`conf`	Clinical care management and workflow by episodes. AMIA P. L. Claus, Paul C. Carpenter, Christopher G. Chute, David N. Mohr, P. S. Gibbons
1997	Misc	`conf`	Metaphrase: Achieving Formalized EMR Problem Lists from Informal Input. AMIA William G. Cole, David D. Sherertz, Mark S. Tuttle, Kevin Keck, Nels Olson, Christopher G. Chute, Charles Safran
1997	J	`jnl`	Research Paper: Phase II Evaluation of Clinical Coding Schemes: Completeness, Taxonomy, Mapping, Definitions, and Clarity. J. Am. Medical Informatics Assoc. James R. Campbell, Paul C. Carpenter, Charles Sneiderman, Simon P. Cohn, Christopher G. Chute, Judith J. Warren
1997	Misc	`conf`	Standardized problem list generation, utilizing the Mayo canonical vocabulary embedded within the Unified Medical Language System. AMIA Peter L. Elkin, David N. Mohr, Mark S. Tuttle, William G. Cole, Geoffrey E. Atkin, Kevin Keck, Thomas B. Fisk, B. H. Kaihoi, K. E. Lee, Michael C. Higgins, Henri J. Suermondt, Nels Olson, P. L. Claus, Paul C. Carpenter, Christopher G. Chute
1997	Misc	`conf`	Supporting Postcoordination in an Electronic Problem List. AMIA Kevin Keck, Keith E. Campbell, Christopher G. Chute, Peter L. Elkin, Mark S. Tuttle, William G. Cole
1996	J	`jnl`	Research Paper: The Content Coverage of Clinical classifications. J. Am. Medical Informatics Assoc. Christopher G. Chute, Simon P. Cohn, Keith E. Campbell, Diane E. Oliver, James R. Campbell
1994	J	`jnl`	An Example-Based Mapping Method for Text Categorization and Retrieval. ACM Trans. Inf. Syst. Yiming Yang, Christopher G. Chute
1994	—	`conf`	TREC-3 Retrieval Evaluation Using Expert Network. TREC Yiming Yang, Christopher G. Chute, Geoffrey E. Atkin, Andrew Anda
1993	A*	`conf`	An Application of Least Squares Fit Mapping to Text Information Retrieval. SIGIR Yiming Yang, Christopher G. Chute
1992	B	`conf`	A Linear Least Squares Fit Mapping Method For Information Retrieval From Natural Language Texts. COLING Yiming Yang, Christopher G. Chute