Christoph Kaleta

24 papers C 1Journal 20Unranked 3
YearRankTypeTitle / Venue / Authors
2021 J jnl
Dynamic optimization reveals alveolar epithelial cells as key mediators of host defense in invasive aspergillosis.
PLoS Comput. Biol.
Jan Ewald, Flora Rivieccio, Lukás Radosa, Stefan Schuster, Axel A. Brakhage, Christoph Kaleta
2017 J jnl
BacArena: Individual-based metabolic modeling of heterogeneous microbes in complex communities.
PLoS Comput. Biol.
Eugen Bauer, Johannes Zimmermann, Federico Baldini, Ines Thiele, Christoph Kaleta
2017 J jnl
Optimality principles reveal a complex interplay of intermediate toxicity and kinetic efficiency in the regulation of prokaryotic metabolism.
PLoS Comput. Biol.
Jan Ewald, Martin Bartl, Thomas Dandekar, Christoph Kaleta
2016 J jnl
Pervasive Selection for Cooperative Cross-Feeding in Bacterial Communities.
PLoS Comput. Biol.
Sebastian Germerodt, Katrin Bohl, Anja Lück, Samay Pande, Anja Schröter, Christoph Kaleta, Stefan Schuster, Christian Kost
2015 J jnl
A minimal model for explaining the higher ATP production in the Warburg effect.
PeerJ Prepr.
Stefan Schuster, Daniel Boley, Philip Möller, Christoph Kaleta
2015 J jnl
Computing autocatalytic sets to unravel inconsistencies in metabolic network reconstructions.
Bioinform.
Ralf Schmidt, Silvio Waschina, Daniela Boettger-Schmidt, Christian Kost, Christoph Kaleta
2015 J jnl
Optimal programs of pathway control: dissecting the influence of pathway topology and feedback inhibition on pathway regulation.
BMC Bioinform.
Gundián M. de Hijas-Liste, Eva Balsa-Canto, Jan Ewald, Martin Bartl, Pu Li, Julio R. Banga, Christoph Kaleta
2013 — conf
Optimal regulatory programs for the control of metabolic pathways: The case of feedback inhibition.
MED
Gundián M. de Hijas-Liste, Eva Balsa-Canto, Julio R. Banga, Christoph Kaleta
2011 J jnl
Combining Metabolic Pathway Analysis with Evolutionary Game Theory. Explaining the occurrence of low-yield pathways by an analytic optimization approach.
Biosyst.
Stefan Schuster, Luis F. de Figueiredo, Anja Schröter, Christoph Kaleta
2011 J jnl
More than just a metabolic regulator - elucidation and validation of new targets of PdhR in Escherichia coli.
BMC Syst. Biol.
Anna-Katharina Göhler, Öznur Kökpinar, Wolfgang Schmidt-Heck, Robert Geffers, Reinhard Guthke, Ursula Rinas, Stefan Schuster, Knut Jahreis, Christoph Kaleta
2011 J jnl
Special issue: Integration of OMICs datasets into Metabolic Pathway Analysis.
Biosyst.
Christoph Kaleta, Luis F. de Figueiredo, Ines Heiland, Steffen Klamt, Stefan Schuster
2010 J jnl
A parallel algorithm to compute chemical organizations in biological networks.
Bioinform.
Florian Centler, Christoph Kaleta, Pietro Speroni di Fenizio, Peter Dittrich
2010 — conf
CASOP GS: Computing Intervention Strategies Targeted at Production Improvement in Genome-scale Metabolic Networks.
GCB
Katrin Bohl, Luis F. de Figueiredo, Oliver Hädicke, Steffen Klamt, Christian Kost, Stefan Schuster, Christoph Kaleta
2010 J jnl
Integrative inference of gene-regulatory networks in Escherichia coli using information theoretic concepts and sequence analysis.
BMC Syst. Biol.
Christoph Kaleta, Anna-Katharina Göhler, Stefan Schuster, Knut Jahreis, Reinhard Guthke, Swetlana Nikolajewa
2009 J jnl
Can sugars be produced from fatty acids? A test case for pathway analysis tools.
Bioinform.
Luis F. de Figueiredo, Stefan Schuster, Christoph Kaleta, David A. Fell
2009 — conf
Computing Elementary Flux Modes in Genome-scale Metabolic Networks.
GCB
Christoph Kaleta, Luis F. de Figueiredo, Jörn Behre, Stefan Schuster
2009 J jnl
Computing the shortest elementary flux modes in genome-scale metabolic networks.
Bioinform.
Luis F. de Figueiredo, Adam Podhorski, Angel Rubio, Christoph Kaleta, John E. Beasley, Stefan Schuster, Francisco J. Planes
2009 J jnl
Response to comment on 'Can sugars be produced from fatty acids? A test case for pathway analysis tools'.
Bioinform.
Luis F. de Figueiredo, Stefan Schuster, Christoph Kaleta, David A. Fell
2009 J jnl
Using chemical organization theory for model checking.
Bioinform.
Christoph Kaleta, Stephan Richter, Peter Dittrich
2008 J jnl
Can sugars be produced from fatty acids? A test case for pathway analysis tools.
Bioinform.
Luis F. de Figueiredo, Stefan Schuster, Christoph Kaleta, David A. Fell
2008 C conf
Chemical organizations in living systems.
ALIFE
Peter Dittrich, Florian Centler, Christoph Kaleta, Naoki Matsumaru, Pietro Speroni di Fenizio
2008 J jnl
Computing chemical organizations in biological networks.
Bioinform.
Florian Centler, Christoph Kaleta, Pietro Speroni di Fenizio, Peter Dittrich
2008 J jnl
Phenotype prediction in regulated metabolic networks.
BMC Syst. Biol.
Christoph Kaleta, Florian Centler, Pietro Speroni di Fenizio, Peter Dittrich
2007 J jnl
Integrated network reconstruction, visualization and analysis using YANAsquare.
BMC Bioinform.
Roland Schwarz, Chunguang Liang, Christoph Kaleta, Mark Kühnel, Eik Hoffmann, Sergei Kuznetsov, Michael Hecker, Gareth Griffiths, Stefan Schuster, Thomas Dandekar