Christian N. S. Pedersen

56 papers A* 3A 2B 9C 7Misc 1Journal 28Unranked 5
YearRankTypeTitle / Venue / Authors
2018 J jnl
Benchmarking the HLA typing performance of Polysolver and Optitype in 50 Danish parental trios.
BMC Bioinform.
Maria Luisa Matey-Hernandez, Lasse Maretty, Jacob Malte Jensen, Bent Petersen, Jonas Andreas Sibbesen, Siyang Liu, Palle Villesen, Laurits Skov, Kirstine Belling, Christian Theil Have, José M. G. Izarzugaza, Marie Grosjean, Jette Bork-Jensen, Jakob Grove, Thomas D. Als, Shujia Huang, Yuqi Chang, Ruiqi Xu, Weijian Ye, Junhua Rao, Xiaosen Guo, Jihua Sun, Hongzhi Cao, Chen Ye, John van Beusekom, Thomas Espeseth, Esben N. Flindt, Rune M. Friborg, Anders E. Halager, Stephanie Le Hellard, Christina M. Hultman, Francesco Lescai, Shengting Li, Ole Lund, Peter Løngreen, Thomas Mailund, Ole Mors, Christian N. S. Pedersen, Thomas Sicheritz-Pontén, Patrick F. Sullivan, Ali Syed, David Westergaard, Rachita Yadav, Ning Li, Xun Xu, Torben Hansen, Anders Krogh, Lars Bolund, Thorkild I. A. Sørensen, Oluf Pedersen, Ramneek Gupta, Simon Rasmussen, Søren Besenbacher, Anders D. Børglum, Jun Wang, Hans Eiberg, Karsten Kristiansen, Mikkel Heide Schierup, Søren Brunak
2017 J jnl
Prediction of Primary Tumors in Cancers of Unknown Primary.
J. Integr. Bioinform.
Dan Søndergaard, Svend V. Nielsen, Christian N. S. Pedersen, Søren Besenbacher
2017 J jnl
Sequencing and
Nat.
Lasse Maretty, Jacob Malte Jensen, Bent Petersen, Jonas Andreas Sibbesen, Siyang Liu, Palle Villesen, Laurits Skov, Kirstine Belling, Christian Theil Have, José M. G. Izarzugaza, Marie Grosjean, Jette Bork-Jensen, Jakob Grove, Thomas D. Als, Shujia Huang, Yuqi Chang, Ruiqi Xu, Weijian Ye, Junhua Rao, Xiaosen Guo, Jihua Sun, Hongzhi Cao, Chen Ye, John van Beusekom, Thomas Espeseth, Esben N. Flindt, Rune M. Friborg, Anders E. Halager, Stephanie Le Hellard, Christina M. Hultman, Francesco Lescai, Shengting Li, Ole Lund, Peter Løngreen, Thomas Mailund, Maria Luisa Matey-Hernandez, Ole Mors, Christian N. S. Pedersen, Thomas Sicheritz-Pontén, Patrick F. Sullivan, Ali Syed, David Westergaard, Rachita Yadav, Ning Li, Xun Xu, Torben Hansen, Anders Krogh, Lars Bolund, Thorkild I. A. Sørensen, Oluf Pedersen, Ramneek Gupta, Simon Rasmussen, Søren Besenbacher, Anders D. Børglum, Jun Wang, Hans Eiberg, Karsten Kristiansen, Søren Brunak, Mikkel Heide Schierup
2016 J jnl
Computational discovery of specificity-conferring sites in non-ribosomal peptide synthetases.
Bioinform.
Michael Knudsen, Dan Søndergaard, Claus Tofting-Olesen, Frederik T. Hansen, Ditlev Egeskov Brodersen, Christian N. S. Pedersen
2014 J jnl
tqDist: a library for computing the quartet and triplet distances between binary or general trees.
Bioinform.
Andreas Sand, Morten Kragelund Holt, Jens Johansen, Gerth Stølting Brodal, Thomas Mailund, Christian N. S. Pedersen
2013 J jnl
A practical O(n log
BMC Bioinform.
Andreas Sand, Gerth Stølting Brodal, Rolf Fagerberg, Christian N. S. Pedersen, Thomas Mailund
2013 J jnl
Characterising RNA secondary structure space using information entropy.
BMC Bioinform.
Zsuzsanna Sükösd, Bjarne Knudsen, James W. J. Anderson, Ádám Novák, Jørgen Kjems, Christian N. S. Pedersen
2013 A* conf
Efficient algorithms for computing the triplet and quartet distance between trees of arbitrary degree.
SODA
Gerth Stølting Brodal, Rolf Fagerberg, Thomas Mailund, Christian N. S. Pedersen, Andreas Sand
2013 — ch.
GPU-Accelerated High-Accuracy Molecular Docking Using Guided Differential Evolution.
Massively Parallel Evolutionary Computation on GPGPUs
Martin Simonsen, Mikael H. Christensen, René Thomsen, Christian N. S. Pedersen
2013 J jnl
zipHMMlib: a highly optimised HMM library exploiting repetitions in the input to speed up the forward algorithm.
BMC Bioinform.
Andreas Sand, Martin Kristiansen, Christian N. S. Pedersen, Thomas Mailund
2012 J jnl
PPfold 3.0: fast RNA secondary structure prediction using phylogeny and auxiliary data.
Bioinform.
Zsuzsanna Sükösd, Bjarne Knudsen, Jørgen Kjems, Christian N. S. Pedersen
2012 J jnl
UniMoG - a unifying framework for genomic distance calculation and sorting based on DCJ.
Bioinform.
Rolf Hilker, Corinna Sickinger, Christian N. S. Pedersen, Jens Stoye
2011 J jnl
A sub-cubic time algorithm for computing the quartet distance between two general trees.
Algorithms Mol. Biol.
Jesper Buus Nielsen, Anders K. Kristensen, Thomas Mailund, Christian N. S. Pedersen
2011 A conf
GPU-accelerated high-accuracy molecular docking using guided differential evolution: real world applications.
GECCO
Martin Simonsen, Christian N. S. Pedersen, Mikael H. Christensen, René Thomsen
2011 J jnl
Molecular Docking with Ligand Attached Water Molecules.
J. Chem. Inf. Model.
Mette Alstrup Lie, René Thomsen, Christian N. S. Pedersen, Birgit Schiøtt, Mikael H. Christensen
2011 Misc conf
Rapid computation of distance estimators from nucleotide and amino acid alignments.
SAC
Martin Simonsen, Christian N. S. Pedersen
2011 J jnl
Using Inverted Indices for Accelerating LINGO Calculations.
J. Chem. Inf. Model.
Thomas Greve Kristensen, Jesper Buus Nielsen, Christian N. S. Pedersen
2010 J jnl
A tree-based method for the rapid screening of chemical fingerprints.
Algorithms Mol. Biol.
Thomas Greve Kristensen, Jesper Buus Nielsen, Christian N. S. Pedersen
2010 — conf
Building Very Large Neighbour-joining Trees.
BIOINFORMATICS
Martin Simonsen, Thomas Mailund, Christian N. S. Pedersen
2010 C conf
Data Structures for Accelerating Tanimoto Queries on Real Valued Vectors.
WABI
Thomas Greve Kristensen, Christian N. S. Pedersen
2010 — conf
Inference of Large Phylogenies Using Neighbour-Joining.
BIOSTEC (Selected Papers)
Martin Simonsen, Thomas Mailund, Christian N. S. Pedersen
2009 — conf
A Quadratic Time Algorithm for Computing the Quartet Distance between Two General Trees.
IJCBS
Thomas Mailund, Jesper Buus Nielsen, Christian N. S. Pedersen
2009 C conf
A Tree Based Method for the Rapid Screening of Chemical Fingerprints.
WABI
Thomas Greve Kristensen, Jesper Buus Nielsen, Christian N. S. Pedersen
2009 J jnl
A fast algorithm for genome-wide haplotype pattern mining.
BMC Bioinform.
Søren Besenbacher, Christian N. S. Pedersen, Thomas Mailund
2009 — conf
Optimal Overlay of Ligands with Flexible Bonds Using Differential Evolution.
IJCBS
Thomas Greve Kristensen, Christian N. S. Pedersen
2008 J jnl
Computing the All-Pairs Quartet Distance on a Set of Evolutionary Trees.
J. Bioinform. Comput. Biol.
Martin Stig Stissing, Thomas Mailund, Christian N. S. Pedersen, Gerth Stølting Brodal, Rolf Fagerberg
2008 C conf
Rapid Neighbour-Joining.
WABI
Martin Simonsen, Thomas Mailund, Christian N. S. Pedersen
2007 B conf
Computing the All-Pairs Quartet Distance on a Set of Evolutionary Trees.
APBC
Martin Stig Stissing, Thomas Mailund, Christian N. S. Pedersen, Gerth Stølting Brodal, Rolf Fagerberg
2007 B conf
Computing the Quartet Distance Between Evolutionary Trees of Bounded Degree.
APBC
Martin Stig Stissing, Christian N. S. Pedersen, Thomas Mailund, Gerth Stølting Brodal, Rolf Fagerberg
2007 J jnl
Experiences with GeneRecon on MiG.
Future Gener. Comput. Syst.
Thomas Mailund, Christian N. S. Pedersen, Jonas Bardino, Brian Vinter, Henrik Hoey Karlsen
2006 J jnl
Fast calculation of the quartet distance between trees of arbitrary degrees.
Algorithms Mol. Biol.
Chris Christiansen, Thomas Mailund, Christian N. S. Pedersen, Martin Randers, Martin Stig Stissing
2006 J jnl
GeneRecon - a coalescent based tool for fine-scale association mapping.
Bioinform.
Thomas Mailund, Mikkel H. Schierup, Christian N. S. Pedersen, Jesper N. Madsen, Jotun Hein, Leif Schauser
2006 J jnl
Recrafting the neighbor-joining method.
BMC Bioinform.
Thomas Mailund, Gerth Stølting Brodal, Rolf Fagerberg, Christian N. S. Pedersen, Derek Phillips
2005 J jnl
CoaSim: A flexible environment for simulating genetic data under coalescent models.
BMC Bioinform.
Thomas Mailund, Mikkel H. Schierup, Christian N. S. Pedersen, Peter J. M. Mechlenborg, Jesper N. Madsen, Leif Schauser
2005 C conf
Computing the Quartet Distance Between Trees of Arbitrary Degree.
WABI
Chris Christiansen, Thomas Mailund, Christian N. S. Pedersen, Martin Randers
2005 — conf
Initial Experiences with GeneRecon on MiG.
GCA
Thomas Mailund, Christian N. S. Pedersen, Jonas Bardino, Brian Vinter, Henrik Hoey Karlsen
2005 J jnl
RBT - a tool for building refined Buneman trees.
Bioinform.
Søren Besenbacher, Thomas Mailund, Lasse Westh-Nielsen, Christian N. S. Pedersen
2004 J jnl
Computing the Quartet Distance between Evolutionary Trees in Time O(n log n).
Algorithmica
Gerth Stølting Brodal, Rolf Fagerberg, Christian N. S. Pedersen
2004 J jnl
QDist-quartet distance between evolutionary trees.
Bioinform.
Thomas Mailund, Christian N. S. Pedersen
2004 J jnl
QuickJoin - fast neighbour-joining tree reconstruction.
Bioinform.
Thomas Mailund, Christian N. S. Pedersen
2003 C conf
Computing Refined Buneman Trees in Cubic Time.
WABI
Gerth Stølting Brodal, Rolf Fagerberg, Anna Östlin, Christian N. S. Pedersen, S. Srinivasa Rao
2002 C conf
Comparative Methods for Gene Structure Prediction in Homologous Sequences.
WABI
Christian N. S. Pedersen, Tejs Scharling
2002 A* conf
Solving the String Statistics Problem in Time O(n log n).
ICALP
Gerth Stølting Brodal, Rune B. Lyngsø, Anna Östlin, Christian N. S. Pedersen
2002 J jnl
The consensus string problem and the complexity of comparing hidden Markov models.
J. Comput. Syst. Sci.
Rune B. Lyngsø, Christian N. S. Pedersen
2001 C conf
Comparing a Hidden Markov Model and a Stochastic Context-Free Grammar.
WABI
Arun K. Jagota, Rune B. Lyngsø, Christian N. S. Pedersen
2001 B conf
Complexity of Comparing Hidden Markov Models.
ISAAC
Rune B. Lyngsø, Christian N. S. Pedersen
2001 B conf
Computing the Quartet Distance between Evolutionary Trees in Time O(n log
ISAAC
Gerth Stølting Brodal, Rolf Fagerberg, Christian N. S. Pedersen
2001 A* conf
The Complexity of Constructing Evolutionary Trees Using Experiments.
ICALP
Gerth Stølting Brodal, Rolf Fagerberg, Christian N. S. Pedersen, Anna Östlin
2000 B conf
Finding Maximal Quasiperiodicities in Strings.
CPM
Gerth Stølting Brodal, Christian N. S. Pedersen
2000 B conf
Pseudoknots in RNA secondary structures.
RECOMB
Rune B. Lyngsø, Christian N. S. Pedersen
2000 J jnl
RNA Pseudoknot Prediction in Energy-Based Models.
J. Comput. Biol.
Rune B. Lyngsø, Christian N. S. Pedersen
1999 J jnl
Fast evaluation of internal loops in RNA secondary structure prediction.
Bioinform.
Rune B. Lyngsø, Michael Zuker, Christian N. S. Pedersen
1999 B conf
Finding Maximal Pairs with Bounded Gap.
CPM
Gerth Stølting Brodal, Rune B. Lyngsø, Christian N. S. Pedersen, Jens Stoye
1999 B conf
Internal loops in RNA secondary structure prediction.
RECOMB
Rune B. Lyngsø, Michael Zuker, Christian N. S. Pedersen
1999 A conf
Metrics and Similarity Measures for Hidden Markov Models.
ISMB
Rune B. Lyngsø, Christian N. S. Pedersen, Henrik Nielsen
1998 B conf
Comparison of Coding DNA.
CPM
Christian N. S. Pedersen, Rune B. Lyngsø, Jotun Hein