Christian M. Reidys

78 papers Journal 71Unranked 4
YearRankTypeTitle / Venue / Authors
2026 J jnl
Divide and Predict: An Architecture for Input Space Partitioning and Enhanced Accuracy.
CoRR
Fenix W. D. Huang, Henning S. Mortveit, Christian M. Reidys
2024 J jnl
The site linkage spectrum of data arrays.
CoRR
Christopher L. Barrett, Andrei C. Bura, Fenix W. D. Huang, Christian M. Reidys
2022 J jnl
A computational framework for weighted simplicial homology.
CoRR
Andrei C. Bura, Neelav S. Dutta, Thomas J. X. Li, Christian M. Reidys
2022 J jnl
Michael Waterman's Contributions to Computational Biology and Bioinformatics.
J. Comput. Biol.
Pavel A. Pevzner, Martin Vingron, Christian M. Reidys, Fengzhu Sun, Sorin Istrail
2021 J jnl
Loop homology of bi-secondary structures.
Discret. Math.
Andrei C. Bura, Qijun He, Christian M. Reidys
2021 J jnl
Multiscale Feedback Loops in SARS-CoV-2 Viral Evolution.
J. Comput. Biol.
Christopher L. Barrett, Andrei C. Bura, Qijun He, Fenix W. D. Huang, Thomas J. X. Li, Michael S. Waterman, Christian M. Reidys
2021 J jnl
The energy-spectrum of bicompatible sequences.
Algorithms Mol. Biol.
Fenix W. D. Huang, Christopher L. Barrett, Christian M. Reidys
2020 J jnl
On an enhancement of RNA probing data using information theory.
Algorithms Mol. Biol.
Thomas J. X. Li, Christian M. Reidys
2019 J jnl
A Boltzmann Sampler for 1-Pairs with Double Filtration.
J. Comput. Biol.
Christopher L. Barrett, Qijun He, Fenix W. D. Huang, Christian M. Reidys
2019 J jnl
D-Chain Tomography of Networks: A New Structure Spectrum and an Application to the SIR Process.
SIAM J. Appl. Dyn. Syst.
Ricky X. F. Chen, Andrei C. Bura, Christian M. Reidys
2019 J jnl
On an enhancement of RNA probing data using Information Theory.
CoRR
Thomas J. X. Li, Christian M. Reidys
2018 J jnl
An Efficient Dual Sampling Algorithm with Hamming Distance Filtration.
J. Comput. Biol.
Christopher L. Barrett, Qijun He, Fenix W. D. Huang, Christian M. Reidys
2018 J jnl
Degeneracy and genetic assimilation in RNA evolution.
BMC Bioinform.
Reza Rezazadegan, Christian M. Reidys
2018 J jnl
Network tomography: a new structure spectrum for studying network dynamics.
CoRR
Ricky X. F. Chen, Christian M. Reidys, Andrei C. Bura
2017 J jnl
A Combinatorial Identity Concerning Plane Colored Trees and its Applications.
J. Integer Seq.
Ricky X. F. Chen, Christian M. Reidys
2017 J jnl
A topological framework for signed permutations.
Discret. Math.
Fenix W. D. Huang, Christian M. Reidys
2017 J jnl
Sequence-structure relations of biopolymers.
Bioinform.
Christopher L. Barrett, Fenix W. D. Huang, Christian M. Reidys
2016 J jnl
Plane Permutations and Applications to a Result of Zagier-Stanley and Distances of Permutations.
SIAM J. Discret. Math.
Ricky X. F. Chen, Christian M. Reidys
2016 J jnl
RNA Secondary Structures Having a Compatible Sequence of Certain Nucleotide Ratios.
J. Comput. Biol.
Christopher L. Barrett, Thomas J. X. Li, Christian M. Reidys
2016 J jnl
Topological language for RNA.
CoRR
Fenix W. D. Huang, Christian M. Reidys
2015 J jnl
A simple framework on sorting permutations.
CoRR
Ricky X. F. Chen, Christian M. Reidys
2015 — conf
Evidence of higher order patterns in information transmission between nucleotide sequences and folded molecular shapes of RNA.
BICT
Christopher L. Barrett, Fenix W. D. Huang, Christian M. Reidys
2014 J jnl
Combinatorics of
J. Comput. Biol.
Hillary S. W. Han, Thomas J. X. Li, Christian M. Reidys
2014 J jnl
Shapes of Interacting RNA Complexes.
J. Comput. Biol.
Benjamin M. M. Fu, Christian M. Reidys
2014 J jnl
The evolution of the random reversal graph.
Appl. Math. Comput.
Christian M. Reidys, Emma Yu Jin
2013 J jnl
On Topological RNA Interaction Structures.
J. Comput. Biol.
Jing Qin, Christian M. Reidys
2013 J jnl
Uniform generation of RNA pseudoknot structures with genus filtration
CoRR
Fenix W. D. Huang, Markus E. Nebel, Christian M. Reidys
2012 J jnl
A Phase Transition in Energy-Filtered RNA Secondary Structures.
J. Comput. Biol.
Hillary S. W. Han, Christian M. Reidys
2012 J jnl
Addendum: topology and prediction of RNA pseudoknots.
Bioinform.
Christian M. Reidys, Fenix W. D. Huang, Jørgen E. Andersen, Robert C. Penner, Peter F. Stadler, Markus E. Nebel
2012 J jnl
On the combinatorics of sparsification.
Algorithms Mol. Biol.
Fenix W. D. Huang, Christian M. Reidys
2012 J jnl
Symmetric circular matchings and RNA folding.
Discret. Math.
Ivo L. Hofacker, Christian M. Reidys, Peter F. Stadler
2012 J jnl
The 5′-3′ Distance of RNA Secondary Structures.
J. Comput. Biol.
Hillary S. W. Han, Christian M. Reidys
2012 J jnl
Topology of RNA-RNA Interaction Structures.
J. Comput. Biol.
Jørgen E. Andersen, Fenix W. D. Huang, Robert C. Penner, Christian M. Reidys
2011 — book
Combinatorial Computational Biology of RNA - Pseudoknots and Neutral Networks.
Christian M. Reidys
2011 J jnl
Loops in Canonical RNA Pseudoknot Structures.
J. Comput. Biol.
Markus E. Nebel, Christian M. Reidys, Rita R. Wang
2011 J jnl
RNA-RNA interaction prediction based on multiple sequence alignments.
Bioinform.
Andrew X. Li, Manja Marz, Jing Qin, Christian M. Reidys
2011 J jnl
Random induced subgraphs of Cayley graphs induced by transpositions.
Discret. Math.
Emma Yu Jin, Christian M. Reidys
2011 J jnl
Topology and prediction of RNA pseudoknots.
Bioinform.
Christian M. Reidys, Fenix W. D. Huang, Jørgen E. Andersen, Robert C. Penner, Peter F. Stadler, Markus E. Nebel
2010 J jnl
Inverse folding of RNA pseudoknot structures.
Algorithms Mol. Biol.
James Z. M. Gao, Linda Y. M. Li, Christian M. Reidys
2010 J jnl
Modular,
Electron. J. Comb.
Christian M. Reidys, Rita R. Wang, Albus Y. Y. Zhao
2010 J jnl
On the Uniform Generation of Modular Diagrams.
Electron. J. Comb.
Fenix W. D. Huang, Christian M. Reidys
2010 J jnl
On the decomposition of
Adv. Appl. Math.
Emma Yu Jin, Christian M. Reidys
2010 J jnl
RNA pseudoknot structures with arc-length >=3 and stack-length >=sigma.
Discret. Appl. Math.
Emma Yu Jin, Christian M. Reidys
2010 J jnl
Shapes of RNA Pseudoknot Structures.
J. Comput. Biol.
Christian M. Reidys, Rita R. Wang
2010 J jnl
Target prediction and a statistical sampling algorithm for RNA-RNA interaction.
Bioinform.
Fenix W. D. Huang, Jing Qin, Christian M. Reidys, Peter F. Stadler
2009 J jnl
Combinatorial design of pseudoknot RNA.
Adv. Appl. Math.
Emma Yu Jin, Christian M. Reidys
2009 J jnl
Efficient Counting and Asymptotics of k-Noncrossing Tangled Diagrams.
Electron. J. Comb.
William Y. C. Chen, Jing Qin, Christian M. Reidys, Doron Zeilberger
2009 J jnl
Folding 3-Noncrossing RNA Pseudoknot Structures.
J. Comput. Biol.
Fenix W. D. Huang, Wade W. J. Peng, Christian M. Reidys
2009 J jnl
Large components in random induced subgraphs of n-cubes.
Discret. Math.
Christian M. Reidys
2009 J jnl
Partition function and base pairing probabilities for RNA-RNA interaction prediction.
Bioinform.
Fenix W. D. Huang, Jing Qin, Christian M. Reidys, Peter F. Stadler
2009 J jnl
Sequence-structure relations of pseudoknot RNA.
BMC Bioinform.
Fenix W. D. Huang, Linda Y. M. Li, Christian M. Reidys
2008 — book
An Introduction to Sequential Dynamical Systems.
Henning S. Mortveit, Christian M. Reidys
2008 J jnl
Canonical RNA Pseudoknot Structures.
J. Comput. Biol.
Gang Ma, Christian M. Reidys
2008 J jnl
Combinatorics of sequential dynamical systems.
Discret. Math.
Christian M. Reidys
2008 J jnl
Crossings and Nestings in Tangled Diagrams.
Electron. J. Comb.
William Y. C. Chen, Jing Qin, Christian M. Reidys
2008 J jnl
Pseudoknot RNA Structures with Arc-Length >= 4.
J. Comput. Biol.
Hillary S. W. Han, Christian M. Reidys
2007 J jnl
On a New Class of Load Balancing Network Protocols.
Adv. Complex Syst.
Stephan J. Eidenbenz, Anders A. Hansson, Venkatesh Ramaswamy, Christian M. Reidys
2006 — ch.
Combinatorics of Genotype-Phenotype Maps: An RNA Case Study.
Computational Complexity and Statistical Physics
Christian M. Reidys
2005 J jnl
On Asynchronous Cellular Automata.
Adv. Complex Syst.
Anders Å. Hansson, Henning S. Mortveit, Christian M. Reidys
2005 J jnl
On certain morphisms of sequential dynamical systems.
Discret. Math.
Christian M. Reidys
2004 J jnl
Neutral Evolution and Mutation Rates of Sequential Dynamical Systems.
Adv. Complex Syst.
Henning S. Mortveit, Christian M. Reidys
2004 J jnl
Reduction of Discrete Dynamical Systems over Graphs.
Adv. Complex Syst.
Henning S. Mortveit, Christian M. Reidys
2003 J jnl
ETS IV: Sequential dynamical systems: fixed points, invertibility and equivalence.
Appl. Math. Comput.
Christopher L. Barrett, Henning S. Mortveit, Christian M. Reidys
2002 J jnl
Combinatorial Landscapes.
SIAM Rev.
Christian M. Reidys, Peter F. Stadler
2002 J jnl
Distances In Random Induced Subgraphs Of Generalized N-Cubes.
Comb. Probab. Comput.
Christian M. Reidys
2002 J jnl
Sequential dynamical systems.
Artif. Life Robotics
Christopher L. Barrett, Henning S. Mortveit, Christian M. Reidys
2001 J jnl
Discrete, sequential dynamical systems.
Discret. Math.
Henning S. Mortveit, Christian M. Reidys
2001 J jnl
Elements of a theory of simulation III: equivalence of SDS.
Appl. Math. Comput.
Christopher L. Barrett, Henning S. Mortveit, Christian M. Reidys
2001 J jnl
Neutrality in fitness landscapes.
Appl. Math. Comput.
Christian M. Reidys, Peter F. Stadler
2001 J jnl
On Acyclic Orientations and Sequential Dynamical Systems.
Adv. Appl. Math.
Christian M. Reidys
2000 J jnl
Elements of a theory of simulation II: sequential dynamical systems.
Appl. Math. Comput.
Christopher L. Barrett, Henning S. Mortveit, Christian M. Reidys
2000 J jnl
Random Subgraphs of Cayley Graphs over
Eur. J. Comb.
Christian M. Reidys
2000 — conf
Sequential Dynamical Systems and Applications to Simulations.
Annual Simulation Symposium
Christopher L. Barrett, B. W. Bush, Stephan Kopp, Henning S. Mortveit, Christian M. Reidys
1999 J jnl
Elements of a theory of computer simulation I: Sequential CA over random graphs.
Appl. Math. Comput.
Christopher L. Barrett, Christian M. Reidys
1999 J jnl
Neutral networks: a combinatorial perspective.
Adv. Complex Syst.
Stephan Kopp, Christian M. Reidys
1996 J jnl
Bio-molecular Shapes and Algebraic Structures.
Comput. Chem.
Christian M. Reidys, Peter F. Stadler
1996 — conf
Neutral Evolutionary Dynamics.
German Conference on Bioinformatics
Christian V. Forst, Christian M. Reidys
1995 — conf
Evolutionary Dynamics and Optimization: Neutral Networks as Model-Landscapes for RNA Secondary-Structure Folding-Landscapes.
ECAL
Christian V. Forst, Christian M. Reidys, Jacqueline Weber