Chris Upton

17 papers A 2C 2Journal 13
YearRankTypeTitle / Venue / Authors
2021 J jnl
Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research.
Briefings Bioinform.
Franziska Hufsky, Kevin Lamkiewicz, Alexandre Almeida, Abdel Aouacheria, Cecilia N. Arighi, Alex Bateman, Jan Baumbach, Niko Beerenwinkel, Christian Brandt, Marco Cacciabue, Sara Chuguransky, Oliver Drechsel, Robert D. Finn, Adrian Fritz, Stephan Fuchs, Georges Hattab, Anne-Christin Hauschild, Dominik Heider, Marie Hoffmann, Martin Hölzer, Stefan Hoops, Lars Kaderali, Ioanna Kalvari, Max von Kleist, Renó Kmiecinski, Denise Kühnert, Gorka Lasso, Pieter Libin, Markus List, Hannah F. Löchel, Maria Jesus Martin, Roman Martin, Julian O. Matschinske, Alice C. McHardy, Pedro Mendes, Jaina Mistry, Vincent Navratil, Eric P. Nawrocki, Áine Niamh O'toole, Nancy Ontiveros-Palacios, Anton I. Petrov, Guillermo Rangel-Pineros, Nicole Redaschi, Susanne Reimering, Knut Reinert, Alejandro Reyes, Lorna J. Richardson, David L. Robertson, Sepideh Sadegh, Joshua B. Singer, Kristof Theys, Chris Upton, Marius Welzel, Lowri Williams, Manja Marz
2014 J jnl
Incongruencies in Vaccinia Virus Phylogenetic Trees.
Comput.
Chad Smithson, Samantha Kampman, Benjamin M. Hetman, Chris Upton
2009 A conf
Suffix trees for very large genomic sequences.
CIKM
Marina Barsky, Ulrike Stege, Alex Thomo, Chris Upton
2008 J jnl
A graph approach to the threshold all-against-all substring matching problem.
ACM J. Exp. Algorithmics
Marina Barsky, Ulrike Stege, Alex Thomo, Chris Upton
2008 A conf
A new method for indexing genomes using on-disk suffix trees.
CIKM
Marina Barsky, Ulrike Stege, Alex Thomo, Chris Upton
2007 J jnl
GraphDNA: a Java program for graphical display of DNA composition analyses.
BMC Bioinform.
Jamie M. Thomas, Daniel Horspool, Gordon Brown, Vasily Tcherepanov, Chris Upton
2007 C conf
Shortest Path Approaches for the Longest Common Subsequence of a Set of Strings.
BIBE
Marina Barsky, Ulrike Stege, Alex Thomo, Chris Upton
2006 C conf
A New Algorithm for Fast All-Against-All Substring Matching.
SPIRE
Marina Barsky, Ulrike Stege, Alex Thomo, Chris Upton
2006 J jnl
Java GUI for InterProScan (JIPS): A tool to help process multiple InterProScans and perform ortholog analysis.
BMC Bioinform.
Aijazuddin Syed, Chris Upton
2006 J jnl
Predicted function of the vaccinia virus G5R protein.
Bioinform.
Melissa Da Silva, Ling Shen, Vasily Tcherepanov, Cristalle Watson, Chris Upton
2005 J jnl
Poxvirus Bioinformatics Resource Center: a comprehensive
Nucleic Acids Res.
Elliot J. Lefkowitz, Chris Upton, Shankar S. Changayil, Charles Buck, Paula Traktman, R. Mark L. Buller
2005 J jnl
Recent Hits Acquired by BLAST (ReHAB): A tool to identify new hits in sequence similarity searches.
BMC Bioinform.
Joe Whitney, David J. Esteban, Chris Upton
2004 J jnl
Base-By-Base: Single nucleotide-level analysis of whole viral genome alignments.
BMC Bioinform.
Ryan Brodie, Alex J. Smith, Rachel L. Roper, Vasily Tcherepanov, Chris Upton
2004 J jnl
JDotter: a Java interface to multiple dotplots generated by dotter.
Bioinform.
Ryan Brodie, Rachel L. Roper, Chris Upton
2002 J jnl
Poxvirus Orthologous Clusters (POCs).
Bioinform.
Angelika Ehlers, John Osborne, Stephanie Slack, Rachel L. Roper, Chris Upton
2000 J jnl
BLAST Search Updater: a notification system for new database matches.
Bioinform.
Matthew Boone, Chris Upton
2000 J jnl
Viral Genome DataBase: storing and analyzing genes and proteins from complete viral genomes.
Bioinform.
David Hiscock, Chris Upton