Chris P. Barnes

12 papers Misc 1Journal 11
YearRankTypeTitle / Venue / Authors
2025 J jnl
MIMIC: a Python package for simulating, inferring, and predicting microbial community interactions and dynamics.
Bioinform.
Pedro Fontanarrosa, Chania Clare, Alex J. H. Fedorec, Chris P. Barnes
2022 J jnl
Chaos in synthetic microbial communities.
PLoS Comput. Biol.
Behzad D. Karkaria, Angelika Manhart, Alex J. H. Fedorec, Chris P. Barnes
2022 J jnl
Deep reinforcement learning for optimal experimental design in biology.
PLoS Comput. Biol.
Neythen J. Treloar, Nathan Braniff, Brian P. Ingalls, Chris P. Barnes
2020 J jnl
Deep reinforcement learning for the control of microbial co-cultures in bioreactors.
PLoS Comput. Biol.
Neythen J. Treloar, Alex J. H. Fedorec, Brian P. Ingalls, Chris P. Barnes
2018 J jnl
Computing with biological switches and clocks.
Nat. Comput.
Neil Dalchau, Gregory Szép, Rosa D. Hernansaiz-Ballesteros, Chris P. Barnes, Luca Cardelli, Andrew Phillips, Attila Csikász-Nagy
2016 J jnl
A computational method for the investigation of multistable systems and its application to genetic switches.
BMC Syst. Biol.
Miriam Leon, Mae L. Woods, Alex J. H. Fedorec, Chris P. Barnes
2016 J jnl
Mechanistic Modelling and Bayesian Inference Elucidates the Variable Dynamics of Double-Strand Break Repair.
PLoS Comput. Biol.
Mae L. Woods, Chris P. Barnes
2014 J jnl
Model Selection in Systems Biology Depends on Experimental Design.
PLoS Comput. Biol.
Daniel Silk, Paul D. W. Kirk, Chris P. Barnes, Tina Toni, Michael P. H. Stumpf
2014 Misc conf
On Industrial Strength Bio-design Automation.
ICTERI
Wolf-Ekkehard Matzke, Chris P. Barnes, Eyck Jentzsch, Thorsten Mascher, Michael P. H. Stumpf
2012 J jnl
Considerate approaches to constructing summary statistics for ABC model selection.
Stat. Comput.
Chris P. Barnes, Sarah Filippi, Michael P. H. Stumpf, Thomas Thorne
2011 J jnl
GPU accelerated biochemical network simulation.
Bioinform.
Yanxiang Zhou, Juliane Liepe, Xia Sheng, Michael P. H. Stumpf, Chris P. Barnes
2010 J jnl
ABC-SysBio - approximate Bayesian computation in Python with GPU support.
Bioinform.
Juliane Liepe, Chris P. Barnes, Erika Cule, Kamil Erguler, Paul D. W. Kirk, Tina Toni, Michael P. H. Stumpf