Chittibabu Guda

24 papers Misc 1Journal 23
YearRankTypeTitle / Venue / Authors
2026 J jnl
An explainable-AI framework reveals novel lncRNAs specific for breast cancer subtypes.
Frontiers Bioinform.
Jai Chand Patel, Avinash M. Veerappa, Chittibabu Guda
2025 J jnl
ScRDAVis: An R shiny application for single-cell transcriptome data analysis and visualization.
PLoS Comput. Biol.
Sankarasubramanian Jagadesan, Chittibabu Guda
2025 J jnl
scAED: a framework for mapping the enhancer state at single-cell resolution.
Briefings Bioinform.
Avinash M. Veerappa, Jai Chand Patel, Sushil Kumar Shakyawar, Sankarasubramanian Jagadesan, Chittibabu Guda
2024 J jnl
CloudATAC: a cloud-based framework for ATAC-Seq data analysis.
Briefings Bioinform.
Avinash M. Veerappa, M. Jordan Rowley, Angela Maggio, Laura Beaudry, Dale Hawkins, Allen Kim, Sahil Sethi, Paul L. Sorgen, Chittibabu Guda
2019 J jnl
K-mer-Based Motif Analysis in Insect Species across Anopheles, Drosophila, and Glossina Genera and Its Application to Species Classification.
Comput. Math. Methods Medicine
Matyas F. Cserhati, Peng Xiao, Chittibabu Guda
2019 J jnl
The integrated National NeuroAIDS Tissue Consortium database: a rich platform for neuroHIV research.
Database J. Biol. Databases Curation
Abigail J. Heithoff, Steven A. Totusek, Duc Le, Lucas Barwick, Gary Gensler, Donald R. Franklin, Allison C. Dye, Sanjit Pandey, Seth Sherman, Chittibabu Guda, Howard S. Fox
2016 J jnl
Classification of breast cancer patients using somatic mutation profiles and machine learning approaches.
BMC Syst. Biol.
Suleyman Vural, Xiaosheng Wang, Chittibabu Guda
2015 J jnl
LocSigDB: a database of protein localization signals.
Database J. Biol. Databases Curation
Simarjeet Negi, Sanjit Pandey, Satish Mahadevan Srinivasan, Akram Mohammed, Chittibabu Guda
2015 J jnl
The National NeuroAIDS Tissue Consortium (NNTC) Database: an integrated database for HIV-related studies.
Database J. Biol. Databases Curation
Matyas F. Cserhati, Sanjit Pandey, James J. Beaudoin, Lorena Baccaglini, Chittibabu Guda, Howard S. Fox
2013 J jnl
Mining for class-specific motifs in protein sequence classification.
BMC Bioinform.
Satish Mahadevan Srinivasan, Suleyman Vural, Brian R. King, Chittibabu Guda
2012 J jnl
Mining functional subgraphs from cancer protein-protein interaction networks.
BMC Syst. Biol.
Ru Shen, Nalin C. W. Goonesekere, Chittibabu Guda
2009 J jnl
Comparative Analysis of Protein-Protein Interactions in Cancer-Associated Genes.
Genom. Proteom. Bioinform.
Purnima Guda, Sridar V. Chittur, Chittibabu Guda
2008 J jnl
Semi-supervised learning for classification of protein sequence data.
Sci. Program.
Brian R. King, Chittibabu Guda
2007 J jnl
Reconstruction of Pathways Associated with Amino Acid Metabolism in Human Mitochondria.
Genom. Proteom. Bioinform.
Purnima Guda, Chittibabu Guda, Shankar Subramaniam
2006 J jnl
DMAPS: a database of multiple alignments for protein structures.
Nucleic Acids Res.
Chittibabu Guda, Lipika R. Pal, Ilya N. Shindyalov
2006 J jnl
LMPD: LIPID MAPS proteome database.
Nucleic Acids Res.
Dawn Cotter, Andreia Maer, Chittibabu Guda, Brian Saunders, Shankar Subramaniam
2006 J jnl
Predicting the Subcellular Localization of Human Proteins Using Machine Learning and Exploratory Data Analysis.
Genom. Proteom. Bioinform.
George K. Acquaah-Mensah, Sonia M. Leach, Chittibabu Guda
2006 J jnl
pTARGET: a web server for predicting protein subcellular localization.
Nucleic Acids Res.
Chittibabu Guda
2005 J jnl
TARGET: a new method for predicting protein subcellular localization in eukaryotes.
Bioinform.
Chittibabu Guda, Shankar Subramaniam
2004 J jnl
CE-MC: a multiple protein structure alignment server.
Nucleic Acids Res.
Chittibabu Guda, Sifang Lu, Eric D. Scheeff, Philip E. Bourne, Ilya N. Shindyalov
2004 J jnl
MITOPRED: a genome-scale method for prediction of nucleus-encoded mitochondrial proteins.
Bioinform.
Chittibabu Guda, Eoin Fahy, Shankar Subramaniam
2004 J jnl
MITOPRED: a web server for the prediction of mitochondrial proteins.
Nucleic Acids Res.
Chittibabu Guda, Purnima Guda, Eoin Fahy, Shankar Subramaniam
2004 J jnl
SledgeHMMER: a web server for batch searching the Pfam database.
Nucleic Acids Res.
Giridhar Chukkapalli, Chittibabu Guda, Shankar Subramaniam
2001 Misc conf
A New Algorithm for the Alignment of Multiple Protein Structures Using Monte Carlo Optimization.
Pacific Symposium on Biocomputing
Chittibabu Guda, Eric D. Scheeff, Philip E. Bourne, Ilya N. Shindyalov