Ching-Huei Tsou

24 papers A* 1C 1Misc 9Journal 10Unranked 3

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	BMFM-DNA: A SNP-aware DNA foundation model to capture variant effects. CoRR Hongyang Li, Sanjoy Dey, Bum Chul Kwon, Michael M. Danziger, Michal Rosen-Tzvi, Jianying Hu, James Kozloski, Ching-Huei Tsou, Bharath Dandala, Pablo Meyer
2025	J	`jnl`	BMFM-RNA: An Open Framework for Building and Evaluating Transcriptomic Foundation Models. CoRR Bharath Dandala, Michael M. Danziger, Ella Barkan, Tanwi Biswas, Viatcheslav Gurev, Jianying Hu, Matthew Madgwick, Akira Koseki, Tal Kozlovski, Michal Rosen-Zvi, Yishai Shimoni, Ching-Huei Tsou
2025	J	`jnl`	BioVERSE: Representation Alignment of Biomedical Modalities to LLMs for Multi-Modal Reasoning. CoRR Ching-Huei Tsou, Michal Ozery-Flato, Ella Barkan, Diwakar Mahajan, Ben Shapira
2023	J	`jnl`	Extracting medication changes in clinical narratives using pre-trained language models. J. Biomed. Informatics Giridhar Kaushik Ramachandran, Kevin Lybarger, Yaya Liu, Diwakar Mahajan, Jennifer J. Liang, Ching-Huei Tsou, Meliha Yetisgen, Özlem Uzuner
2023	J	`jnl`	Overview of the 2022 n2c2 shared task on contextualized medication event extraction in clinical notes. J. Biomed. Informatics Diwakar Mahajan, Jennifer J. Liang, Ching-Huei Tsou, Özlem Uzuner
2022	J	`jnl`	Extracting Medication Changes in Clinical Narratives using Pre-trained Language Models. CoRR Giridhar Kaushik Ramachandran, Kevin Lybarger, Yaya Liu, Diwakar Mahajan, Jennifer J. Liang, Ching-Huei Tsou, Meliha Yetisgen, Özlem Uzuner
2022	Misc	`conf`	Hierarchy-aware Adverse Reaction Embeddings for Signal Detection. AMIA Venkata Joopudi, Bharath Dandala, Ching-Huei Tsou, Jennifer J. Liang
2021	Misc	`conf`	Evaluating Social Determinants of Health in Clinical Communications Data. AMIA Diwakar Mahajan, Jennifer J. Liang, Ananya Poddar, Sasha Ballen, Ching-Huei Tsou
2021	Misc	`conf`	Exploring Effectiveness of Domain and Task-Adaptive Pretraining for Clinical Information Extraction. AMIA Venkata Joopudi, Ananya Poddar, Bharath Dandala, Ching-Huei Tsou
2021	Misc	`conf`	Extracting Daily Dosage from Medication Instructions in EHRs: An Automated Approach and Lessons Learned. AMIA Ching-Huei Tsou, Diwakar Mahajan, Jennifer J. Liang
2021	—	`conf`	IBMResearch at MEDIQA 2021: Toward Improving Factual Correctness of Radiology Report Abstractive Summarization. BioNLP@NAACL-HLT Diwakar Mahajan, Ching-Huei Tsou, Jennifer J. Liang
2021	Misc	`conf`	Leveraging Transformer-based Sequential Sentence Models for Clinical Information Extraction. AMIA Ananya Poddar, Venkata Joopudi, Bharath Dandala, Ching-Huei Tsou
2021	Misc	`conf`	Reducing Physicians' Cognitive Load During Chart Review: A Problem-Oriented Summary of the Patient Electronic Record. AMIA Jennifer J. Liang, Ching-Huei Tsou, Bharath Dandala, Ananya Poddar, Venkata Joopudi, Diwakar Mahajan, John M. Prager, Preethi Raghavan, Michele Payne
2021	Misc	`conf`	Toward Understanding Clinical Context of Medication Change Events in Clinical Narratives. AMIA Diwakar Mahajan, Jennifer J. Liang, Ching-Huei Tsou
2020	J	`jnl`	Extracting Daily Dosage from Medication Instructions in EHRs: An Automated Approach and Lessons Learned. CoRR Diwakar Mahajan, Jennifer J. Liang, Ching-Huei Tsou
2020	Misc	`conf`	Joint Modelling of Entities and Relations for Adverse Drug Event Extraction using Knowledge-aware Neural Attentive Deep Learning Models. AMIA Bharath Dandala, Venkata Joopudi, Ching-Huei Tsou, Jennifer J. Liang, Parthasarathy Suryanarayanan
2020	Misc	`conf`	Timely and Efficient AI Insights on EHR: System Design. AMIA Parthasarathy Suryanarayanan, Edward A. Epstein, Abhishek Malvankar, Burn L. Lewis, Lou Degenaro, Jennifer J. Liang, Ching-Huei Tsou, Divya R. Pathak
2020	J	`jnl`	Toward Understanding Clinical Context of Medication Change Events in Clinical Narratives. CoRR Diwakar Mahajan, Jennifer J. Liang, Ching-Huei Tsou
2020	J	`jnl`	WNTRAC: Artificial Intelligence Assisted Tracking of Non-pharmaceutical Interventions Implemented Worldwide for COVID-19. CoRR Parthasarathy Suryanarayanan, Ching-Huei Tsou, Ananya Poddar, Diwakar Mahajan, Bharath Dandala, Piyush Madan, Anshul Agrawal, Charles Wachira, Samuel Mogaka Osebe, Osnat Bar-Shira, Clifton Kipchirchir, Sharon Okwako, William Ogallo, Fred Otieno, Timothy Nyota, Fiona Matu, Vesna Resende Barros, Daniel Shats, Oren Kagan, Sekou L. Remy, Oliver Bent, Shilpa Mahatma, Aisha Walcott-Bryant, Divya Pathak, Michal Rosen-Zvi
2017	J	`jnl`	Automated problem list generation and physicians perspective from a pilot study. Int. J. Medical Informatics Murthy V. Devarakonda, Neil Mehta, Ching-Huei Tsou, Jennifer J. Liang, Amy S. Nowacki, John Eric Jelovsek
2017	—	`conf`	Ground Truth Creation for Complex Clinical NLP Tasks - an Iterative Vetting Approach and Lessons Learned. CRI Jennifer J. Liang, Ching-Huei Tsou, Murthy V. Devarakonda
2015	A*	`conf`	Automated Problem List Generation from Electronic Medical Records in IBM Watson. AAAI Murthy V. Devarakonda, Ching-Huei Tsou
2015	—	`conf`	Toward Generating Domain-Specific / Personalized Problem Lists from Electronic Medical Records. AAAI Fall Symposia Ching-Huei Tsou, Murthy V. Devarakonda, Jennifer J. Liang
2014	C	`conf`	Problem-oriented patient record summary: An early report on a Watson application. Healthcom Murthy V. Devarakonda, Dongyang Zhang, Ching-Huei Tsou, Mihaela A. Bornea