Chin Lung Lu

61 papers A 2B 3Misc 5Journal 47Unranked 2
YearRankTypeTitle / Venue / Authors
2025 J jnl
A More Efficient Dynamic Programming Algorithm for Designing a Coding Sequence by Jointly Optimizing Its Structural Stability and Codon Usage.
IEEE Trans. Comput. Biol. Bioinform.
Yan-Ru Ju, Long-Shang Cho, Chin Lung Lu
2025 — conf
A Sparse Dynamic Programming Algorithm for Solving the Coding Sequence Design Problem.
COCOON (2)
Long-Shang Cho, Kai-Wei Chang, Chin Lung Lu
2022 J jnl
An Integer Linear Programming Approach for Scaffolding Based on Exemplar Breakpoint Distance.
J. Comput. Biol.
Yi-Kung Shieh, Dao-Yuan Peng, Yu-Han Chen, Tsung-Wei Wu, Chin Lung Lu
2022 J jnl
Multi-CSAR: a web server for scaffolding contigs using multiple reference genomes.
Nucleic Acids Res.
Shu-Cheng Liu, Yan-Ru Ju, Chin Lung Lu
2021 J jnl
Computing a longest common almost-increasing subsequence of two sequences.
Theor. Comput. Sci.
Toan Thang Ta, Yi-Kung Shieh, Chin Lung Lu
2021 J jnl
The exact multiple pattern matching problem solved by a reference tree approach.
Theor. Comput. Sci.
Yi-Kung Shieh, Shyong Jian Shyu, Chin Lung Lu, Richard Chia-Tung Lee
2020 J jnl
Clover: a clustering-oriented de novo assembler for Illumina sequences.
BMC Bioinform.
Ming-Feng Hsieh, Chin Lung Lu, Chuan Yi Tang
2018 J jnl
CSAR-web: a web server of contig scaffolding using algebraic rearrangements.
Nucleic Acids Res.
Kun-Tze Chen, Chin Lung Lu
2018 J jnl
CSAR: a contig scaffolding tool using algebraic rearrangements.
Bioinform.
Kun-Tze Chen, Chia-Liang Liu, Shang-Hao Huang, Hsin-Ting Shen, Yi-Kung Shieh, Hsien-Tai Chiu, Chin Lung Lu
2018 J jnl
Two-string consensus problem under non-overlapping inversion and transposition distance.
Inf. Process. Lett.
Toan Thang Ta, Cheng-Yao Lin, Chin Lung Lu
2017 J jnl
R3D-BLAST2: an improved search tool for similar RNA 3D substructures.
BMC Bioinform.
Ching-Yu Yen, Jian-Cheng Lin, Kun-Tze Chen, Chin Lung Lu
2016 J jnl
An efficient algorithm for computing non-overlapping inversion and transposition distance.
Inf. Process. Lett.
Toan Thang Ta, Cheng-Yao Lin, Chin Lung Lu
2016 J jnl
An efficient algorithm for one-sided block ordering problem under block-interchange distance.
Theor. Comput. Sci.
Kun-Tze Chen, Chi-Long Li, Hsien-Tai Chiu, Chin Lung Lu
2016 J jnl
Multi-CAR: a tool of contig scaffolding using multiple references.
BMC Bioinform.
Kun-Tze Chen, Cheih-Jung Chen, Hsin-Ting Shen, Chia-Liang Liu, Shang-Hao Huang, Chin Lung Lu
2016 — ch.
Sorting by Transpositions and Reversals (Approximate Ratio 1.5).
Encyclopedia of Algorithms
Chin Lung Lu
2016 J jnl
iPARTS2: an improved tool for pairwise alignment of RNA tertiary structures, version 2.
Nucleic Acids Res.
Chung-Han Yang, Cheng-Ting Shih, Kun-Tze Chen, Po-Han Lee, Ping-Han Tsai, Jian-Cheng Lin, Ching-Yu Yen, Tiao-Yin Lin, Chin Lung Lu
2015 J jnl
A Systematical and Parallel Approach to Solve Problems Involving Special Properties of Bit-Vectors.
Comput. J.
Chia Shin Ou, Chin Lung Lu, Richard C. T. Lee
2015 J jnl
An Efficient Algorithm for the Contig Ordering Problem under Algebraic Rearrangement Distance.
J. Comput. Biol.
Chin Lung Lu
2014 A conf
Approximate String Matching Problem under Non-Overlapping Inversion Distance.
ICS
Shih-Yuan Huang, Chung-Han Yang, Toan Thang Ta, Chin Lung Lu
2014 J jnl
CAR: contig assembly of prokaryotic draft genomes using rearrangements.
BMC Bioinform.
Chin Lung Lu, Kun-Tze Chen, Shih-Yuan Huang, Hsien-Tai Chiu
2014 A conf
Prefix Block-Interchanges on Binary Strings.
ICS
Shih-Wen Chou, Chung-Han Yang, Kun-Tze Chen, Chin Lung Lu
2013 J jnl
A new filtration method and a hybrid strategy for approximate string matching.
Theor. Comput. Sci.
Chia Wei Lu, Chin Lung Lu, Richard C. T. Lee
2013 Misc conf
An Efficient Algorithm for One-Sided Block Ordering Problem with Block-Interchange Distance.
COCOON
Kun-Tze Chen, Chi-Long Li, Chung-Han Yang, Chin Lung Lu
2013 J jnl
Assembling contigs in draft genomes using reversals and block-interchanges.
BMC Bioinform.
Chi-Long Li, Kun-Tze Chen, Chin Lung Lu
2011 J jnl
R3D-BLAST: a search tool for similar RNA 3D substructures.
Nucleic Acids Res.
Yun-Chen Liu, Chung-Han Yang, Kun-Tze Chen, Jyun-Rong Wang, Mei-Ling Cheng, Jen-Chun Chung, Hsien-Tai Chiu, Chin Lung Lu
2010 J jnl
An improved algorithm for sorting by block-interchanges based on permutation groups.
Inf. Process. Lett.
Yen-Lin Huang, Cheng-Chen Huang, Chuan Yi Tang, Chin Lung Lu
2010 J jnl
Reconstructing genome trees of prokaryotes using overlapping genes.
BMC Bioinform.
Chih-Hsien Cheng, Chung-Han Yang, Hsien-Tai Chiu, Chin Lung Lu
2010 J jnl
SoRT
Nucleic Acids Res.
Yen-Lin Huang, Chen-Cheng Huang, Chuan Yi Tang, Chin Lung Lu
2010 J jnl
Sorting by Reversals, Generalized Transpositions, and Translocations Using Permutation Groups.
J. Comput. Biol.
Yen-Lin Huang, Chin Lung Lu
2010 J jnl
iPARTS: an improved tool of pairwise alignment of RNA tertiary structures.
Nucleic Acids Res.
Chih-Wei Wang, Kun-Tze Chen, Chin Lung Lu
2009 J jnl
FASTR3D: a fast and accurate search tool for similar RNA 3D structures.
Nucleic Acids Res.
Chin-En Lai, Ming-Yuan Tsai, Yun-Chen Liu, Chih-Wei Wang, Kun-Tze Chen, Chin Lung Lu
2008 J jnl
An improved algorithm for finding a length-constrained maximum-density subtree in a tree.
Inf. Process. Lett.
Hsin-Hao Su, Chin Lung Lu, Chuan Yi Tang
2008 J jnl
OGtree: a tool for creating genome trees of prokaryotes based on overlapping genes.
Nucleic Acids Res.
Li-Wei Jiang, Kuang-Lun Lin, Chin Lung Lu
2008 J jnl
SARSA: a web tool for structural alignment of RNA using a structural alphabet.
Nucleic Acids Res.
Yen-Fu Chang, Yen-Lin Huang, Chin Lung Lu
2008 — ch.
Sorting by Transpositions and Reversals (Approximate Ratio 1.5).
Encyclopedia of Algorithms
Chin Lung Lu
2007 J jnl
Constrained sequence alignment: A general model and the hardness results.
Discret. Appl. Math.
Yun Sheng Chung, Chin Lung Lu, Chuan Yi Tang
2007 J jnl
Efficient algorithms for regular expression constrained sequence alignment.
Inf. Process. Lett.
Yun Sheng Chung, Chin Lung Lu, Chuan Yi Tang
2007 J jnl
RE-MuSiC: a tool for multiple sequence alignment with regular expression constraints.
Nucleic Acids Res.
Yun Sheng Chung, Wei-Hsun Lee, Chuan Yi Tang, Chin Lung Lu
2006 J jnl
Analysis of circular genome rearrangement by fusions, fissions and block-interchanges.
BMC Bioinform.
Chin Lung Lu, Yen-Lin Huang, Tsui Ching Wang, Hsien-Tai Chiu
2006 B conf
Efficient Algorithms for Regular Expression Constrained Sequence Alignment.
CPM
Yun Sheng Chung, Chin Lung Lu, Chuan Yi Tang
2006 J jnl
SPRING: a tool for the analysis of genome rearrangement using reversals and block-interchanges.
Nucleic Acids Res.
Ying Chih Lin, Chin Lung Lu, Ying-Chuan Liu, Chuan Yi Tang
2005 J jnl
A heuristic approach for detecting RNA H-type pseudoknots.
Bioinform.
Chun-Hsiang Huang, Chin Lung Lu, Hsien-Tai Chiu
2005 J jnl
A memory-efficient algorithm for multiple sequence alignment with constraints.
Bioinform.
Chin Lung Lu, Yen Pin Huang
2005 J jnl
An Efficient Algorithm for Sorting by Block-Interchanges and Its Application to the Evolution of Vibrio Species.
J. Comput. Biol.
Ying Chih Lin, Chin Lung Lu, Hwan-You Chang, Chuan Yi Tang
2005 J jnl
ROBIN: a tool for genome rearrangement of block-interchanges.
Bioinform.
Chin Lung Lu, Tsui Ching Wang, Ying Chih Lin, Chuan Yi Tang
2005 J jnl
The approximability of the weighted Hamiltonian path completion problem on a tree.
Theor. Comput. Sci.
Quincy Wu, Chin Lung Lu, Richard Chia-Tung Lee
2004 J jnl
MuSiC: a tool for multiple sequence alignment with constraints.
Bioinform.
Yin-Te Tsai, Yen Pin Huang, Ching Ta Yu, Chin Lung Lu
2003 J jnl
Constrained Multiple Sequence Alignment Tool Development Andits Application to Rnase Family Alignment.
J. Bioinform. Comput. Biol.
Chuan Yi Tang, Chin Lung Lu, Margaret Dah-Tsyr Chang, Yin-Te Tsai, Yuh-Ju Sun, Kun-Mao Chao, Jia-Ming Chang, Yu-Han Chiou, Chia-Mao Wu, Hao-Teng Chang, Wei-I Chou
2003 J jnl
Efficient minus and signed domination in graphs.
Theor. Comput. Sci.
Chin Lung Lu, Sheng-Lung Peng, Chuan Yi Tang
2003 Misc conf
On the Full and Bottleneck Full Steiner Tree Problems.
COCOON
Yen Hung Chen, Chin Lung Lu, Chuan Yi Tang
2003 J jnl
The full Steiner tree problem.
Theor. Comput. Sci.
Chin Lung Lu, Chuan Yi Tang, Richard Chia-Tung Lee
2002 — conf
Constrained Multiple Sequence Alignment Tool Development and Its Application to RNase Family Alignment.
CSB
Chuan Yi Tang, Chin Lung Lu, Margaret Dah-Tsyr Chang, Yin-Te Tsai, Yuh-Ju Sun, Kun-Mao Chao, Jia-Ming Chang, Yu-Han Chiou, Chia-Mao Wu, Hao-Teng Chang, Wei-I Chou
2002 J jnl
Perfect edge domination and efficient edge domination in graphs.
Discret. Appl. Math.
Chin Lung Lu, Ming-Tat Ko, Chuan Yi Tang
2002 Misc conf
The Full Steiner Tree Problem in Phylogeny.
COCOON
Chin Lung Lu, Chuan Yi Tang, Richard Chia-Tung Lee
2002 J jnl
Weighted efficient domination problem on some perfect graphs.
Discret. Appl. Math.
Chin Lung Lu, Chuan Yi Tang
2001 Misc conf
A New Measure of Edit Distance between Labeled Trees.
COCOON
Chin Lung Lu, Zheng-Yao Su, Chuan Yi Tang
2000 B conf
An Approximate Algorithm for the Weighted Hamiltonian Path Completion Problem on a Tree.
ISAAC
Q. S. Wu, Chin Lung Lu, Richard C. T. Lee
2000 B conf
Efficient Minus and Signed Domination in Graphs.
ISAAC
Chin Lung Lu, Sheng-Lung Peng, Chuan Yi Tang
1998 J jnl
Solving the Weighted Efficient Edge Domination Problem on Bipartite Permutation Graphs.
Discret. Appl. Math.
Chin Lung Lu, Chuan Yi Tang
1997 J jnl
A Linear-Time Algorithm for the Weighted Feedback Vertex Problem on Interval Graphs.
Inf. Process. Lett.
Chin Lung Lu, Chuan Yi Tang
1997 Misc conf
Effincient Domination of Permutation Graphs and Trapezoid Graphs.
COCOON
Y. Daniel Liang, Chin Lung Lu, Chuan Yi Tang