Chiara Pastrello

22 papers A* 1Journal 16
YearRankTypeTitle / Venue / Authors
2023 J jnl
MirDIP 5.2: tissue context annotation and novel microRNA curation.
Nucleic Acids Res.
Anne-Christin Hauschild, Chiara Pastrello, Gitta Kirana Anindya Ekaputeri, Dylan Bethune-Waddell, Mark Abovsky, Zuhaib Ahmed, Max Kotlyar, Richard Lu, Igor Jurisica
2022 J jnl
IID 2021: towards context-specific protein interaction analyses by increased coverage, enhanced annotation and enrichment analysis.
Nucleic Acids Res.
Max Kotlyar, Chiara Pastrello, Zuhaib Ahmed, Justin Chee, Zofia Varyova, Igor Jurisica
2022 J jnl
Pathway integration and annotation: building a puzzle with non-matching pieces and no reference picture.
Briefings Bioinform.
Giuseppe Agapito, Chiara Pastrello, Yun Niu, Igor Jurisica
2022 J jnl
miRAnno - network-based functional microRNA annotation.
Bioinform.
Tomás Tokár, Chiara Pastrello, Mark Abovsky, Sara Rahmati, Igor Jurisica
2021 J jnl
Comprehensive pathway enrichment analysis workflows: COVID-19 case study.
Briefings Bioinform.
Giuseppe Agapito, Chiara Pastrello, Igor Jurisica
2020 J jnl
BioPAX-Parser: parsing and enrichment analysis of BioPAX pathways.
Bioinform.
Giuseppe Agapito, Chiara Pastrello, Pietro Hiram Guzzi, Igor Jurisica, Mario Cannataro
2020 J jnl
GSOAP: a tool for visualization of gene set over-representation analysis.
Bioinform.
Tomás Tokár, Chiara Pastrello, Igor Jurisica
2020 — ch.
Informed Use of Protein-Protein Interaction Data: A Focus on the Integrated Interactions Database (IID).
Protein-Protein Interaction Networks
Chiara Pastrello, Max Kotlyar, Igor Jurisica
2020 J jnl
The IMEx coronavirus interactome: an evolving map of Coronaviridae-host molecular interactions.
Database J. Biol. Databases Curation
Livia Perfetto, Chiara Pastrello, Noemi del-Toro, Margaret J. Duesbury, Marta Iannuccelli, Max Kotlyar, Luana Licata, Birgit Meldal, Kalpana Panneerselvam, Simona Panni, N. Rahimzadeh, Sylvie Ricard-Blum, Lukasz Salwínski, Anjali Shrivastava, Gianni Cesareni, Matteo Pellegrini, Sandra E. Orchard, Igor Jurisica, Henning Hermjakob, Pablo Porras
2020 J jnl
pathDIP 4: an extended pathway annotations and enrichment analysis resource for human, model organisms and domesticated species.
Nucleic Acids Res.
Sara Rahmati, Mark Abovsky, Chiara Pastrello, Max Kotlyar, Richard Lu, Christian A. Cumbaa, Proton Rahman, Vinod Chandran, Igor Jurisica
2019 J jnl
IID 2018 update: context-specific physical protein-protein interactions in human, model organisms and domesticated species.
Nucleic Acids Res.
Max Kotlyar, Chiara Pastrello, Zara Malik, Igor Jurisica
2019 — ch.
Protein-Protein Interaction Databases.
Encyclopedia of Bioinformatics and Computational Biology (1)
Max Kotlyar, Chiara Pastrello, Andrea E. M. Rossos, Igor Jurisica
2019 — ch.
Two Decades of Biological Pathway Databases: Results and Challenges.
Encyclopedia of Bioinformatics and Computational Biology (1)
Sara Rahmati, Chiara Pastrello, Andrea E. M. Rossos, Igor Jurisica
2019 — ch.
Visualization of Biomedical Networks.
Encyclopedia of Bioinformatics and Computational Biology (1)
Anne-Christin Hauschild, Chiara Pastrello, Andrea E. M. Rossos, Igor Jurisica
2018 A* conf
SDREGION: Fast Spotting of Changing Communities in Biological Networks.
KDD
Serene W. H. Wong, Chiara Pastrello, Max Kotlyar, Christos Faloutsos, Igor Jurisica
2018 J jnl
mirDIP 4.1 - integrative database of human microRNA target predictions.
Nucleic Acids Res.
Tomás Tokár, Chiara Pastrello, Andrea E. M. Rossos, Mark Abovsky, Anne-Christin Hauschild, Mike Tsay, Richard Lu, Igor Jurisica
2017 J jnl
pathDIP: an annotated resource for known and predicted human gene-pathway associations and pathway enrichment analysis.
Nucleic Acids Res.
Sara Rahmati, Mark Abovsky, Chiara Pastrello, Igor Jurisica
2016 J jnl
Integrated interactions database: tissue-specific view of the human and model organism interactomes.
Nucleic Acids Res.
Max Kotlyar, Chiara Pastrello, Nicholas Sheahan, Igor Jurisica
2016 J jnl
Robust quantitative scratch assay.
Bioinform.
Andrea Vargas, Marc Angeli, Chiara Pastrello, Rosanne McQuaid, Han Li, Andrea Jurisicova, Igor Jurisica
2015 J jnl
Prioritizing Therapeutics for Lung Cancer: An Integrative Meta-analysis of Cancer Gene Signatures and Chemogenomic Data.
PLoS Comput. Biol.
Kristen Fortney, Joshua Griesman, Max Kotlyar, Chiara Pastrello, Marc Angeli, Ming-Sound Tsao, Igor Jurisica
2014 — ch.
Visual Data Mining: Effective Exploration of the Biological Universe.
Interactive Knowledge Discovery and Data Mining in Biomedical Informatics
David Otasek, Chiara Pastrello, Andreas Holzinger, Igor Jurisica
2013 J jnl
Visual Data Mining of Biological Networks: One Size Does Not Fit All.
PLoS Comput. Biol.
Chiara Pastrello, David Otasek, Kristen Fortney, Giuseppe Agapito, Mario Cannataro, Elize Shirdel, Igor Jurisica