Chia-Ru Chung

21 papers C 4Journal 17
YearRankTypeTitle / Venue / Authors
2025 C conf
AI-Enhanced MALDI-TOF MS Analysis for Important Peaks on Predicting Ciprofloxacin Resistance across Different Gram-Negative Bacteria.
CIBCB
Hsin-Yao Wang, Chia-Ru Chung, Wen-Rui Zhang, Li-Ching Wu, Justin Bo-Kai Hsu, Jang-Jih Lu, Jorng-Tzong Horng
2025 C conf
Explainable AI-Enhanced Kinase Activity Profiling Through Phosphoproteomics.
CIBCB
Chia-Ru Chung, Ming-Feng Ho, Yun Tang, Li-Ching Wu, Justin Bo-Kai Hsu, Tzong-Yi Lee, Jorng-Tzong Horng
2025 C conf
Integrative Framework for Functional analysis of multiple Traditional Chinese Medicines based on transcriptome-driven systems biology and supervised learning strategy.
CIBCB
Yun Tang, Chia-Ru Chung, Hsi-Yuan Huang, Yang-Chi-Dung Lin, Hua-Li Zuo, Jing Li, Liping Li, Siyao Hu, Hsiao-Chin Hong, Fei Wang, Jinrui Bai, Hsien-Da Huang
2025 J jnl
Mobile Virtual Assistant for Multi-Modal Depression-Level Stratification.
IEEE Trans. Affect. Comput.
Eric Hsiao-Kuang Wu, Ting-Yu Gao, Chia-Ru Chung, Chun-Chuan Chen, Chia-Fen Tsai, Shih-Ching Yeh
2025 C conf
Self-Attention Enhanced Deep Learning Models for Immune Cell Deconvolution from Bulk RNA-Seq.
CIBCB
Chia-Ru Chung, Yen-Lin Chen, Yun Tang, Justin Bo-Kai Hsu, Li-Ching Wu, Tzong-Yi Lee, Jorng-Tzong Horng
2024 J jnl
A two-stage computational framework for identifying antiviral peptides and their functional types based on contrastive learning and multi-feature fusion strategy.
Briefings Bioinform.
Jiahui Guan, Lantian Yao, Peilin Xie, Chia-Ru Chung, Yixian Huang, Ying-Chih Chiang, Tzong-Yi Lee
2024 J jnl
ACP-CapsPred: an explainable computational framework for identification and functional prediction of anticancer peptides based on capsule network.
Briefings Bioinform.
Lantian Yao, Peilin Xie, Jiahui Guan, Chia-Ru Chung, Wenyang Zhang, Junyang Deng, Yixian Huang, Ying-Chih Chiang, Tzong-Yi Lee
2024 J jnl
Anti-Drugs Chatbot: Chinese BERT-Based Cognitive Intent Analysis.
IEEE Trans. Comput. Soc. Syst.
Jui-Hsuan Lee, Eric Hsiao-Kuang Wu, Yu-Yen Ou, Yueh-Che Lee, Cheng-Hsun Lee, Chia-Ru Chung
2024 J jnl
CapsEnhancer: An Effective Computational Framework for Identifying Enhancers Based on Chaos Game Representation and Capsule Network.
J. Chem. Inf. Model.
Lantian Yao, Peilin Xie, Jiahui Guan, Chia-Ru Chung, Yixian Huang, Yuxuan Pang, Huacong Wu, Ying-Chih Chiang, Tzong-Yi Lee
2024 J jnl
Qigong Master: A Qigong-Based Attention Training Game Using Action Recognition and Balance Analysis.
IEEE Trans. Games
Chia-Ru Chung, Shih-Ching Yeh, Eric Hsiao-Kuang Wu, Sheng-Yang Lin
2024 J jnl
Virtual-Reality-Based Supermarket for Intellectual Disability Classification, Diagnostics, and Assessment.
IEEE Trans. Learn. Technol.
Chih-Hsuan Chen, Chia-Ru Chung, Hsuan-Yu Yang, Shih-Ching Yeh, Eric Hsiao-Kuang Wu, Hsin-Jung Ting
2023 J jnl
A risk assessment framework for multidrug-resistant
Briefings Bioinform.
Zhuo Wang, Yuxuan Pang, Chia-Ru Chung, Hsin-Yao Wang, Haiyan Cui, Ying-Chih Chiang, Jorng-Tzong Horng, Jang-Jih Lu, Tzong-Yi Lee
2023 J jnl
Identification of species-specific RNA N6-methyladinosine modification sites from RNA sequences.
Briefings Bioinform.
Rulan Wang, Chia-Ru Chung, Hsien-Da Huang, Tzong-Yi Lee
2023 J jnl
Predicting Anti-inflammatory Peptides by Ensemble Machine Learning and Deep Learning.
J. Chem. Inf. Model.
Jiahui Guan, Lantian Yao, Chia-Ru Chung, Peilin Xie, Yilun Zhang, Junyang Deng, Ying-Chih Chiang, Tzong-Yi Lee
2022 J jnl
Neuronal Abnormalities Induced by an Intelligent Virtual Reality System for Methamphetamine Use Disorder.
IEEE J. Biomed. Health Informatics
Chun-Chuan Chen, Meng-Chang Tsai, Eric Hsiao-Kuang Wu, Chia-Ru Chung, Yuchi Lee, Po-Ru Chiu, Po-Yi Tsai, Shao-Rong Sheng, Shih-Ching Yeh
2022 J jnl
dbAMP 2.0: updated resource for antimicrobial peptides with an enhanced scanning method for genomic and proteomic data.
Nucleic Acids Res.
Jhih-Hua Jhong, Lantian Yao, Yuxuan Pang, Zhongyan Li, Chia-Ru Chung, Rulan Wang, Shangfu Li, Wenshuo Li, Mengqi Luo, Renfei Ma, Yuqi Huang, Xiaoning Zhu, Jiahong Zhang, Hexiang Feng, Qifan Cheng, Chunxuan Wang, Kun Xi, Li-Ching Wu, Tzu-Hao Chang, Jorng-Tzong Horng, Lizhe Zhu, Ying-Chih Chiang, Zhuo Wang, Tzong-Yi Lee
2021 J jnl
A large-scale investigation and identification of methicillin-resistant Staphylococcus aureus based on peaks binning of matrix-assisted laser desorption ionization-time of flight MS spectra.
Briefings Bioinform.
Hsin-Yao Wang, Chia-Ru Chung, Zhuo Wang, Shangfu Li, Bo-Yu Chu, Jorng-Tzong Horng, Jang-Jih Lu, Tzong-Yi Lee
2021 J jnl
An Intelligent Virtual-Reality System With Multi-Model Sensing for Cue-Elicited Craving in Patients With Methamphetamine Use Disorder.
IEEE Trans. Biomed. Eng.
Meng-Chang Tsai, Chia-Ru Chung, Chun-Chuan Chen, Jyun-Yu Chen, Shih-Ching Yeh, Chun-Han Lin, Ying-Ju Chen, Ming-Che Tsai, Ya-Ling Wang, Chia-Ju Lin, Eric Hsiao-Kuang Wu
2021 J jnl
Large-scale mass spectrometry data combined with demographics analysis rapidly predicts methicillin resistance in
Briefings Bioinform.
Zhuo Wang, Hsin-Yao Wang, Chia-Ru Chung, Jorng-Tzong Horng, Jang-Jih Lu, Tzong-Yi Lee
2020 J jnl
Characterization and identification of antimicrobial peptides with different functional activities.
Briefings Bioinform.
Chia-Ru Chung, Ting-Rung Kuo, Li-Ching Wu, Tzong-Yi Lee, Jorng-Tzong Horng
2019 J jnl
Rapid classification of group B Streptococcus serotypes based on matrix-assisted laser desorption ionization-time of flight mass spectrometry and machine learning techniques.
BMC Bioinform.
Hsin-Yao Wang, Wen-Chi Li, Kai-Yao Huang, Chia-Ru Chung, Jorng-Tzong Horng, Jen-Fu Hsu, Jang-Jih Lu, Tzong-Yi Lee