Chengze Shen

11 papers C 2Journal 8Unranked 1
YearRankTypeTitle / Venue / Authors
2026 J jnl
CARD: Cluster-level Adaptation with Reward-guided Decoding for Personalized Text Generation.
CoRR
Yutong Song, Jiang Wu, Weijia Zhang, Chengze Shen, Shaofan Yuan, Weitao Lu, Jian Wang, Amir Rahmani, Nikil Dutt, Yu Wang
2026 J jnl
Styles + Persona-plug = Customized LLMs.
CoRR
Yutong Song, Jiang Wu, Shaofan Yuan, Chengze Shen, Jian Wang, Amir M. Rahmani, Nikil D. Dutt, Yu Wang
2025 J jnl
BSCAMPP: Batch-Scaled Phylogenetic Placement on Large Trees.
IEEE Trans. Comput. Biol. Bioinform.
Eleanor Wedell, Chengze Shen, Tandy J. Warnow
2025 — conf
Species detection for microbiomes with TIPP-SD.
BCB
Chengze Shen, Eleanor Wedell, Mihai Pop, Tandy J. Warnow
2025 J jnl
TIPP3 and TIPP3-fast: Improved abundance profiling in metagenomics.
PLoS Comput. Biol.
Chengze Shen, Eleanor Wedell, Mihai Pop, Tandy J. Warnow
2023 C conf
BATCH-SCAMPP: Scaling Phylogenetic Placement Methods to Place Many Sequences (Abstract).
WABI
Eleanor Wedell, Chengze Shen, Tandy J. Warnow
2023 C conf
EMMA: Adding Sequences into a Constraint Alignment with High Accuracy and Scalability (Abstract).
WABI
Chengze Shen, Baqiao Liu, Kelly P. Williams, Tandy J. Warnow
2023 J jnl
EMMA: a new method for computing multiple sequence alignments given a constraint subset alignment.
Algorithms Mol. Biol.
Chengze Shen, Baqiao Liu, Kelly P. Williams, Tandy J. Warnow
2023 J jnl
UPP2: fast and accurate alignment of datasets with fragmentary sequences.
Bioinform.
Minhyuk Park, Stefan Ivanovic, Gillian Chu, Chengze Shen, Tandy J. Warnow
2022 J jnl
MAGUS+eHMMs: improved multiple sequence alignment accuracy for fragmentary sequences.
Bioinform.
Chengze Shen, Paul Zaharias, Tandy J. Warnow
2022 J jnl
WITCH: Improved Multiple Sequence Alignment Through Weighted Consensus Hidden Markov Model Alignment.
J. Comput. Biol.
Chengze Shen, Minhyuk Park, Tandy J. Warnow