Chen Wang

38 papers C 3Misc 2Journal 20Unranked 13
YearRankTypeTitle / Venue / Authors
2024 J jnl
Enabling the clinical application of artificial intelligence in genomics: a perspective of the AMIA Genomics and Translational Bioinformatics Workgroup.
J. Am. Medical Informatics Assoc.
Nephi A. Walton, Radhakrishnan Nagarajan, Chen Wang, Murat Sincan, Robert R. Freimuth, David B. Everman, Derek C. Walton, Scott P. McGrath, Dominick J. Lemas, Panayiotis V. Benos, Alexander V. Alekseyenko, Qianqian Song, Ece D. Gamsiz Uzun, Casey Overby Taylor, Alper Uzun, Thomas N. Person, Nadav Rappoport, Zhongming Zhao, Marc S. Williams
2023 J jnl
Batch-effect correction with sample remeasurement in highly confounded case-control studies.
Nat. Comput. Sci.
Hanxuan Ye, Xianyang Zhang, Chen Wang, Ellen L. Goode, Jun Chen
2023 J jnl
Excerno: Using Mutational Signatures in Sequencing Data to Filter False Variants Caused by Clinical Archival.
J. Comput. Biol.
Audrey Mitchell, Marco Ruiz, Soua Yang, Chen Wang, Jaime I. Dávila
2022 J jnl
Leveraging a pharmacogenomics knowledgebase to formulate a drug response phenotype terminology for genomic medicine.
Bioinform.
Yiqing Zhao, Matthew Brush, Chen Wang, Alex H. Wagner, Hongfang Liu, Robert R. Freimuth
2021 J jnl
Comparisons of Graph Neural Networks on Cancer Classification Leveraging a Joint of Phenotypic and Genetic Features.
CoRR
David Oniani, Chen Wang, Yiqing Zhao, Andrew Wen, Hongfang Liu, Feichen Shen
2021 — conf
Excerno: Filtering Mutations Caused by the Clinical Archival Process in Sequencing Data.
ICCABS
Audrey Mitchell, Marco Ruiz, Soua Yang, Chen Wang, Jaime I. Dávila
2021 J jnl
Generating real-world evidence from unstructured clinical notes to examine clinical utility of genetic tests: use case in BRCAness.
BMC Medical Informatics Decis. Mak.
Yiqing Zhao, Saravut J. Weroha, Ellen L. Goode, Hongfang Liu, Chen Wang
2021 J jnl
Leveraging a Joint of Phenotypic and Genetic Features on Cancer Patient Subgrouping.
CoRR
David Oniani, Chen Wang, Yiqing Zhao, Andrew Wen, Hongfang Liu, Feichen Shen
2021 J jnl
Modeling cancer clinical trials using HL7 FHIR to support downstream applications: A case study with colorectal cancer data.
Int. J. Medical Informatics
Nansu Zong, Daniel J. Stone, Deepak K. Sharma, Andrew Wen, Chen Wang, Yue Yu, Ming Huang, Sijia Liu, Hongfang Liu, Qian Shi, Guoqian Jiang
2021 — conf
POKR: Building a Computable Heterogeneous Knowledge Resource for Precision Oncology.
MedInfo
Yanbo Guo, Chen Wang, Raymond M. Moore, Hongfang Liu, Feichen Shen
2021 J jnl
Semi-Supervised Topological Analysis for Elucidating Hidden Structures in High-Dimensional Transcriptome Datasets.
IEEE ACM Trans. Comput. Biol. Bioinform.
Tianshu Feng, Jaime I. Dávila, Yuanhang Liu, Sangdi Lin, Shuai Huang, Chen Wang
2020 Misc conf
Coverage Profile Correction of Shallow-Depth Circulating Cell-Free DNA Sequencing via Multi-Distance Learning.
PSB
Nicholas B. Larson, Melissa C. Larson, Jie Na, Carlos P. Sosa, Chen Wang, Jean-Pierre A. Kocher, Ross A. Rowsey
2020 Misc conf
Extracting Patient Genetic Information from Unstructured Clinical Notes.
AMIA
Yiqing Zhao, Hanzhong Yu, Luke A. Carlson, Feichen Shen, Sunyang Fu, Hongfang Liu, Chen Wang
2018 — conf
Building a Research-Quality Copy Number Variation Data Repository for Translational Research.
Poly/DMAH@VLDB
Chen Wang, Raymond M. Moore, Jared Evans, Xiao-Nan Hou, S. John Weroha, Guoqian Jiang
2018 J jnl
Detection and visualization of complex structural variants from long reads.
BMC Bioinform.
Zachary Stephens, Chen Wang, Ravishankar K. Iyer, Jean-Pierre A. Kocher
2018 J jnl
Improving Single-Nucleotide Polymorphism-Based Fetal Fraction Estimation of Maternal Plasma Circulating Cell-Free DNA Using Bayesian Hierarchical Models.
J. Comput. Biol.
Nicholas B. Larson, Chen Wang, Jie Na, Ross A. Rowsey, William Edward Highsmith, Nicole L. Hoppman, Jean-Pierre A. Kocher, Eric W. Klee
2017 — conf
Shiny FHIR: An Integrated Framework Leveraging Shiny R and HL7 FHIR to Empower Standards-Based Clinical Data Applications.
MedInfo
Na Hong, Naresh Prodduturi, Chen Wang, Guoqian Jiang
2017 — conf
Shiny FHIR: Empowering Standards-based, Interoperable Clinical Data Applications Using R.
CRI
Na Hong, Naresh Prodduturi, Chen Wang, Guoqian Jiang
2017 — conf
Unraveling complex local genomic rearrangements from long-read data.
BIBM
Zachary D. Stephens, Ravishankar K. Iyer, Chen Wang, Jean-Pierre A. Kocher
2016 — conf
Building an i2b2-Based Integrated Data Repository for Cancer Research: A Case Study of Ovarian Cancer Registry.
DMAH@VLDB
Na Hong, Zheng Li, Richard C. Kiefer, Melissa S. Robertson, Ellen L. Goode, Chen Wang, Guoqian Jiang
2014 J jnl
PatternCNV: a versatile tool for detecting copy number changes from exome sequencing data.
Bioinform.
Chen Wang, Jared Evans, Aditya Bhagwate, Naresh Prodduturi, Vivekananda Sarangi, Mridu Middha, Hugues Sicotte, Peter T. Vedell, Steven N. Hart, Gavin R. Oliver, Jean-Pierre A. Kocher, Matthew J. Maurer, Anne J. Novak, Susan L. Slager, James R. Cerhan, Yan W. Asmann
2014 J jnl
RVboost: RNA-seq variants prioritization using a boosting method.
Bioinform.
Chen Wang, Jaime I. Dávila, Saurabh Baheti, Aditya Bhagwate, Xue Wang, Jean-Pierre A. Kocher, Susan L. Slager, Andrew L. Feldman, Anne J. Novak, James R. Cerhan, E. Aubrey Thompson, Yan W. Asmann
2013 J jnl
Reconstruction of Transcriptional Regulatory Networks by Stability-Based Network Component Analysis.
IEEE ACM Trans. Comput. Biol. Bioinform.
Xi Chen, Jianhua Xuan, Chen Wang, Ayesha N. Shajahan, Rebecca B. Riggins, Robert Clarke
2012 J jnl
Computational analysis of muscular dystrophy sub-types using a novel integrative scheme.
Neurocomputing
Chen Wang, Sook Shin Ha, Jianhua Xuan, Yue Joseph Wang, Eric P. Hoffman
2012 C conf
Detecting aberrant signal transduction pathways from high-throughput data using GIST algorithm.
CIBCB
Jinghua Gu, Jianhua Xuan, Chen Wang, Li Chen, Tian-Li Wang, Ie-Ming Shih
2012 — conf
Reconstruction of Transcription Regulatory Networks by Stability-Based Network Component Analysis.
ISBRA
Xi Chen, Chen Wang, Ayesha N. Shajahan, Rebecca B. Riggins, Robert Clarke, Jianhua Xuan
2012 J jnl
Regulatory component analysis: A semi-blind extraction approach to infer gene regulatory networks with imperfect biological knowledge.
Signal Process.
Chen Wang, Jianhua Xuan, Ie-Ming Shih, Robert Clarke, Yue Joseph Wang
2011 — conf
GIST: A Gibbs sampler to identify intracellular signal transduction pathways.
EMBC
Jinghua Gu, Chen Wang, Ie-Ming Shih, Tian-Li Wang, Yue Wang, Robert Clarke, Jianhua Xuan
2010 C conf
Computational Analysis of Muscular Dystrophy Sub-types Using a Novel Integrative Scheme.
ICMLA
Chen Wang, Sook Shin Ha, Yue Joseph Wang, Jianhua Xuan, Eric P. Hoffman
2010 J jnl
Knowledge-guided gene ranking by coordinative component analysis.
BMC Bioinform.
Chen Wang, Jianhua Xuan, Huai Li, Yue Joseph Wang, Ming Zhan, Eric P. Hoffman, Robert Clarke
2009 J jnl
Biomarker identification by knowledge-driven multilevel ICA and motif analysis.
Int. J. Data Min. Bioinform.
Li Chen, Jianhua Xuan, Chen Wang, Yue Joseph Wang, Ie-Ming Shih, Tian-Li Wang, Zhen Zhang, Robert Clarke, Eric P. Hoffman
2008 — conf
Inferring Condition-Specific miRNA-Gene Modules from miRNA and mRNA Profiling Data.
BCBGC
Jianghui Xiong, Chen Wang, Bai Zhang, Yue Joseph Wang, Eric P. Hoffman, Robert Clarke, Jianhua Xuan
2008 — conf
Integrative Network Component Analysis for Regulatory Network Reconstruction.
ISBRA
Chen Wang, Jianhua Xuan, Li Chen, Po Zhao, Yue Joseph Wang, Robert Clarke, Eric P. Hoffman
2008 J jnl
Knowledge-guided multi-scale independent component analysis for biomarker identification.
BMC Bioinform.
Li Chen, Jianhua Xuan, Chen Wang, Ie-Ming Shih, Yue Joseph Wang, Zhen Zhang, Eric P. Hoffman, Robert Clarke
2008 J jnl
Motif-directed network component analysis for regulatory network inference.
BMC Bioinform.
Chen Wang, Jianhua Xuan, Li Chen, Po Zhao, Yue Joseph Wang, Robert Clarke, Eric P. Hoffman
2008 — conf
Reliability Analysis of Transcriptional Regulatory Networks.
BCBGC
Chen Wang, Jianhua Xuan, Li Chen, Eric P. Hoffman, Robert Clarke
2007 C conf
Biomarker Identification by Knowledge-Driven Multi-Level ICA and Motif Analysis.
ICMLA
Li Chen, Chen Wang, Ie-Ming Shih, Tian-Li Wang, Zhen Zhang, Yue Joseph Wang, Robert Clarke, Eric P. Hoffman, Jianhua Xuan
2007 — conf
Stability-Based Dimension Estimation of ICA with Application to Microarray Data Analysis.
BIOCOMP
Chen Wang, Jianhua Xuan, Ting Gong, Robert Clarke, Eric P. Hoffman, Yue Joseph Wang