Chen Cao - RankMe

24 papers Journal 20Unranked 4

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	BiRNN-DDI: A Drug-Drug Interaction Event Type Prediction Model Based on Bidirectional Recurrent Neural Network and Graph2Seq Representation. J. Comput. Biol. Guishen Wang, Hui Feng, Chen Cao
2025	J	`jnl`	DTI-BGCGCN: A novel bipartite graph-based cluster graph convolutional network for drug-target interaction prediction in modern and traditional chinese medicine. Comput. Biol. Chem. Hongmei Wang, Ming Xu, Zhitong Guo, Guilin You, Guishen Wang, Chen Cao, Xiaowen Hu
2025	J	`jnl`	Heterogeneous Graph Contrastive Learning with Graph Diffusion for Drug Repositioning. J. Chem. Inf. Model. Guishen Wang, Honghan Chen, Handan Wang, Yuyouqiang Fu, Caiye Shi, Chen Cao, Xiaowen Hu
2025	—	`conf`	MMDDI-GDSS: Multi-Modal Feature Fusion Drug-Drug Interaction Event Prediction Model. BIBM Guishen Wang, Handan Wang, Honghan Chen, Chen Cao, Xiaowen Hu
2025	J	`jnl`	MMDDI-SSE: A Novel Multi-Modal Feature Fusion Model With Static Subgraph Embedding for Drug-Drug Interaction Event Prediction. IEEE J. Biomed. Health Informatics Guishen Wang, Honghan Chen, Handan Wang, Hairong Gao, Xiaowen Hu, Chen Cao
2025	J	`jnl`	MMPD-DTA: Integrating Multi-Modal Deep Learning with Pocket-Drug Graphs for Drug-Target Binding Affinity Prediction. J. Chem. Inf. Model. Guishen Wang, Hangchen Zhang, Mengting Shao, Shisen Sun, Chen Cao
2025	J	`jnl`	Medical Graph Diffusion: Hybrid Graph Diffusion With Heterogeneous Graph Convolutional Networks for Medical Text Classification. IEEE J. Biomed. Health Informatics Guishen Wang, Shengnan Li, Keshuang Liu, Xiaowen Hu, Chen Cao
2025	—	`conf`	TransFusionDR: A Framework for Drug Repositioning via Contrastive and High-Order Feature Fusion with Transformers. BIBM Guishen Wang, Hui Feng, Honghan Chen, Zhitong Guo, Chen Cao, Xiaoxuan Gong
2024	J	`jnl`	DeepTGIN: a novel hybrid multimodal approach using transformers and graph isomorphism networks for protein-ligand binding affinity prediction. J. Cheminformatics Guishen Wang, Hangchen Zhang, Mengting Shao, Yuncong Feng, Chen Cao, Xiaowen Hu
2024	J	`jnl`	EHR-HGCN: An Enhanced Hybrid Approach for Text Classification Using Heterogeneous Graph Convolutional Networks in Electronic Health Records. IEEE J. Biomed. Health Informatics Guishen Wang, Xiaoxue Lou, Fang Guo, Devin Kwok, Chen Cao
2024	—	`conf`	MMDDI-MGPFF: Multi-Modal Drug Representation Learning with Molecular Graph and Pharmacological Feature Fusion for Drug-Drug Interaction Event Prediction. BIBM Guishen Wang, Zhitong Guo, Guilin You, Ming Xu, Chen Cao, Xiaowen Hu
2024	J	`jnl`	Multimodal Representation Learning via Graph Isomorphism Network for Toxicity Multitask Learning. J. Chem. Inf. Model. Guishen Wang, Hui Feng, Mengyan Du, Yuncong Feng, Chen Cao
2024	J	`jnl`	Multiome-wide Association Studies: Novel Approaches for Understanding Diseases. Genom. Proteom. Bioinform. Mengting Shao, Kaiyang Chen, Shuting Zhang, Min Tian, Yan Shen, Chen Cao, Ning Gu
2023	—	`conf`	Human-Spa: An Online Platform Based on Spatial Transcriptome Data for Diseases of Human Systems. BIBM Yunyun Su, Feifei Cui, Shiyu Yan, Quan Zou, Chen Cao, Zilong Zhang
2023	J	`jnl`	Probing Conformational Transition of TRPV5 Induced by Mechanical Force Using Coarse-Grained Molecular Dynamics. J. Chem. Inf. Model. Yinwei Gu, Yan Li, Baocai Ma, Ke Ren, Chen Cao, Ning Gu
2022	J	`jnl`	A novel method for drug-target interaction prediction based on graph transformers model. BMC Bioinform. Hongmei Wang, Fang Guo, Mengyan Du, Guishen Wang, Chen Cao
2022	J	`jnl`	Botanical drugs: a new strategy for structure-based target prediction. Briefings Bioinform. Xuxu Wei, Xiang Wu, Zeyu Cheng, Qingming Wu, Chen Cao, Xue Xu, Hongcai Shang
2022	J	`jnl`	Single-cell RNA analysis reveals the potential risk of organ-specific cell types vulnerable to SARS-CoV-2 infections. Comput. Biol. Medicine Zilong Zhang, Feifei Cui, Chen Cao, Qingsuo Wang, Quan Zou
2022	J	`jnl`	webSCST: an interactive web application for single-cell RNA-sequencing data and spatial transcriptomic data integration. Bioinform. Zilong Zhang, Feifei Cui, Wei Su, Lijun Dou, Anqi Xu, Chen Cao, Quan Zou
2022	J	`jnl`	webTWAS: a resource for disease candidate susceptibility genes identified by transcriptome-wide association study. Nucleic Acids Res. Chen Cao, Jianhua Wang, Devin Kwok, Feifei Cui, Zilong Zhang, Da Zhao, Mulin Jun Li, Quan Zou
2021	J	`jnl`	WgLink: reconstructing whole-genome viral haplotypes using L0+L1-regularization. Bioinform. Chen Cao, Matthew Greenberg, Quan Long
2021	J	`jnl`	kTWAS: integrating kernel machine with transcriptome-wide association studies improves statistical power and reveals novel genes. Briefings Bioinform. Chen Cao, Devin Kwok, Shannon Edie, Qing Li, Bowei Ding, Pathum Kossinna, Simone Campbell, Jingjing Wu, Matthew Greenberg, Quan Long
2019	J	`jnl`	PRESM: personalized reference editor for somatic mutation discovery in cancer genomics. Bioinform. Chen Cao, Lauren Mak, Guangxu Jin, Paul Gordon, Kai Ye, Quan Long
2019	J	`jnl`	Using discriminative vector machine model with 2DPCA to predict interactions among proteins. BMC Bioinform. Zhengwei Li, Ru Nie, Zhuhong You, Chen Cao, Jiashu Li