Charles DeLisi

34 papers B 2C 3Misc 1Journal 26Unranked 1
YearRankTypeTitle / Venue / Authors
2021 — book
The Mysterious Commonplace - A Life in Science
The Mysterious Commonplace
Charles DeLisi
2016 J jnl
Visualization of Metabolic Interaction Networks in Microbial Communities Using VisANT 5.0.
PLoS Comput. Biol.
Brian Granger, Yi-Chien Chang, Yan Wang, Charles DeLisi, Daniel Segrè, Zhenjun Hu
2013 J jnl
VisANT 4.0: Integrative network platform to connect genes, drugs, diseases and therapies.
Nucleic Acids Res.
Zhenjun Hu, Yi-Chien Chang, Yan Wang, Chia-Ling Huang, Yang Liu, Feng Tian, Brian Granger, Charles DeLisi
2012 J jnl
Correlation set analysis: detecting active regulators in disease populations using prior causal knowledge.
BMC Bioinform.
Chia-Ling Huang, John Lamb, Leonid Chindelevitch, Jarek Kostrowicki, Justin Guinney, Charles DeLisi, Daniel Ziemek
2012 J jnl
Gene set enrichment analysis: performance evaluation and usage guidelines.
Briefings Bioinform.
Jui-Hung Hung, Tun-Hsiang Yang, Zhenjun Hu, Zhiping Weng, Charles DeLisi
2012 J jnl
The NIH National Center for Integrative Biomedical Informatics (NCIBI).
J. Am. Medical Informatics Assoc.
Brian D. Athey, James D. Cavalcoli, H. V. Jagadish, Gilbert S. Omenn, Barbara Mirel, Matthias Kretzler, Charles F. Burant, Raphael D. Isokpehi, Charles DeLisi
2012 J jnl
Using Functional Signatures to Identify Repositioned Drugs for Breast, Myelogenous Leukemia and Prostate Cancer.
PLoS Comput. Biol.
Daichi Shigemizu, Zhenjun Hu, Jui-Hung Hung, Chia-Ling Huang, Yajie Wang, Charles DeLisi
2011 J jnl
COMBREX: a project to accelerate the functional annotation of prokaryotic genomes.
Nucleic Acids Res.
Richard J. Roberts, Yi-Chien Chang, Zhenjun Hu, John Rachlin, Brian P. Anton, Revonda M. Pokrzywa, Han-Pil Choi, Lina L. Faller, Jyotsna Guleria, Genevieve Housman, Niels Klitgord, Varun Mazumdar, Mark G. McGettrick, Lais Osmani, Rajeswari Swaminathan, Kevin R. Tao, Stanley Letovsky, Dennis Vitkup, Daniel Segrè, Steven L. Salzberg, Charles DeLisi, Martin Steffen, Simon Kasif
2010 C conf
Smoothing Gene Expression Using Biological Networks.
ICMLA
Yue Fan, Mark A. Kon, Shinuk Kim, Charles DeLisi
2009 J jnl
VisANT 3.5: multi-scale network visualization, analysis and inference based on the gene ontology.
Nucleic Acids Res.
Zhenjun Hu, Jui-Hung Hung, Yan Wang, Yi-Chien Chang, Chia-Ling Huang, Matt Huyck, Charles DeLisi
2008 C conf
Ensemble Machine Methods for DNA Binding.
ICMLA
Yue Fan, Mark A. Kon, Charles DeLisi
2008 J jnl
High-precision high-coverage functional inference from integrated data sources.
BMC Bioinform.
Bolan Linghu, Evan S. Snitkin, Dustin T. Holloway, Adam M. Gustafson, Yu Xia, Charles DeLisi
2008 J jnl
VisANT: an integrative framework for networks in systems biology.
Briefings Bioinform.
Zhenjun Hu, Evan S. Snitkin, Charles DeLisi
2007 J jnl
Binding Site Graphs: A New Graph Theoretical Framework for Prediction of Transcription Factor Binding Sites.
PLoS Comput. Biol.
Timothy E. Reddy, Charles DeLisi, Boris E. Shakhnovich
2007 B conf
Learning Methods for DNA Binding in Computational Biology.
IJCNN
Mark A. Kon, Dustin T. Holloway, Yue Fan, Chaitanya Sai, Charles DeLisi
2007 J jnl
Portraits of breast cancer progression.
BMC Bioinform.
Gul S. Dalgin, Gabriela Alexe, Daniel Scanfeld, Pablo Tamayo, Jill P. Mesirov, Shridar Ganesan, Charles DeLisi, Gyan Bhanot
2007 C conf
SVMotif: A Machine Learning Motif Algorithm.
ICMLA
Mark A. Kon, Yue Fan, Dustin T. Holloway, Charles DeLisi
2007 J jnl
VisANT 3.0: new modules for pathway visualization, editing, prediction and construction.
Nucleic Acids Res.
Zhenjun Hu, David M. Ng, Takuji Yamada, Chunnuan Chen, Shuichi Kawashima, Joe Mellor, Bolan Linghu, Minoru Kanehisa, Joshua M. Stuart, Charles DeLisi
2006 — conf
An equilibrium partitioning model connecting gene expression and
ISMB (Supplement of Bioinformatics)
Joe Mellor, Charles DeLisi
2006 J jnl
Comparative assessment of performance and genome dependence among phylogenetic profiling methods.
BMC Bioinform.
Evan S. Snitkin, Adam M. Gustafson, Joseph C. Mellor, Jie Wu, Charles DeLisi
2006 J jnl
Gene annotation and network inference by phylogenetic profiling.
BMC Bioinform.
Jie Wu, Zhenjun Hu, Charles DeLisi
2006 J jnl
Machine learning methods for transcription data integration.
IBM J. Res. Dev.
Dustin T. Holloway, Mark A. Kon, Charles DeLisi
2005 B conf
Discovery and Annotation of Genetic Modules.
RECOMB
Charles DeLisi
2005 J jnl
VisANT: data-integrating visual framework for biological networks and modules.
Nucleic Acids Res.
Zhenjun Hu, Joe Mellor, Jie Wu, Takuji Yamada, Dustin T. Holloway, Charles DeLisi
2004 J jnl
VisANT: an online visualization and analysis tool for biological interaction data.
BMC Bioinform.
Zhenjun Hu, Joseph C. Mellor, Jie Wu, Charles DeLisi
2003 J jnl
ELISA: Structure-Function Inferences based on statistically significant and evolutionarily inspired observations.
BMC Bioinform.
Boris E. Shakhnovich, John M. Harvey, Steve Comeau, David Lorenz, Charles DeLisi, Eugene I. Shakhnovich
2003 J jnl
Identification of functional links between genes using phylogenetic profiles.
Bioinform.
Jie Wu, Simon Kasif, Charles DeLisi
2002 Misc conf
A hypothesis driven approach to condition specific transcription factor binding site characterization in S.c..
SAC
Rhonda Harrison, Charles DeLisi
2002 J jnl
Condition specific transcription factor binding site characterization in Saccharomyces cerevisiae.
Bioinform.
Rhonda Harrison, Charles DeLisi
2002 J jnl
Predictome: a database of putative functional links between proteins.
Nucleic Acids Res.
Joseph C. Mellor, Itai Yanai, Karl H. Clodfelter, Julian Mintseris, Charles DeLisi
1999 J jnl
Computational problems in cell biology.
Comput. Sci. Eng.
Charles DeLisi, Sandor Vajda
1996 J jnl
Peptide docking using dynamic programming.
J. Comput. Chem.
Kamalakar Gulukota, Sandor Vajda, Charles DeLisi
1993 J jnl
Loop closure via bond scaling and relaxation.
J. Comput. Chem.
Qiang Zheng, Rakefet Rosenfeld, Sandor Vajda, Charles DeLisi
1984 J jnl
Computer analysis and structure prediction of nucleic acids and proteins.
Nucleic Acids Res.
Minoru Kanehisa, P. Klein, P. Greif, Charles DeLisi