Charles Auffray

14 papers Journal 13Unranked 1
YearRankTypeTitle / Venue / Authors
2022 J jnl
GraphML-SBGN bidirectional converter for metabolic networks.
J. Integr. Bioinform.
Irina Balaur, Ludovic Roy, Vasundra Touré, Alexander Mazein, Charles Auffray
2021 J jnl
Newt: a comprehensive web-based tool for viewing, constructing and analyzing biological maps.
Bioinform.
Hasan Balci, Metin Can Siper, Nasim Saleh, Ilkin Safarli, Ludovic Roy, Merve Kilicarslan, Rumeysa Ozaydin, Alexander Mazein, Charles Auffray, Özgün Babur, Emek Demir, Ugur Dogrusoz
2020 J jnl
Human-like layout algorithms for signalling hypergraphs: outlining requirements.
Briefings Bioinform.
Martin Siebenhaller, Sune S. Nielsen, Fintan McGee, Irina Balaur, Charles Auffray, Alexander Mazein
2019 J jnl
Community-driven roadmap for integrated disease maps.
Briefings Bioinform.
Marek Ostaszewski, Stephan Gebel, Inna Kuperstein, Alexander Mazein, Andrei Yu. Zinovyev, Ugur Dogrusoz, Jan Hasenauer, Ronan M. T. Fleming, Nicolas Le Novère, Piotr Gawron, Thomas S. Ligon, Anna Niarakis, David P. Nickerson, Daniel Weindl, Rudi Balling, Emmanuel Barillot, Charles Auffray, Reinhard Schneider
2019 J jnl
Navigating the disease landscape: knowledge representations for contextualizing molecular signatures.
Briefings Bioinform.
Mansoor A. S. Saqi, Artem Lysenko, Yike Guo, Tatsuhiko Tsunoda, Charles Auffray
2018 J jnl
A computational framework for complex disease stratification from multiple large-scale datasets.
BMC Syst. Biol.
Bertrand De Meulder, Diane Lefaudeux, Aruna T. Bansal, Alexander Mazein, Amphun Chaiboonchoe, Hassan Ahmed, Irina Balaur, Mansoor A. S. Saqi, Johann Pellet, Stéphane Ballereau, Nathanaël Lemonnier, Kai Sun, Ioannis Pandis, Xian Yang, Manohara Batuwitage, Kosmas Kretsos, Jonathan van Eyll, Alun Bedding, Timothy Davison, Paul Dodson, Christopher Larminie, Anthony D. Postle, Julie Corfield, Ratko Djukanovic, Kian Fan Chung, Ian M. Adcock, Yike Guo, Peter J. Sterk, Alexander Manta, Anthony Rowe, Frédéric Baribaud, Charles Auffray
2017 J jnl
EpiGeNet: A Graph Database of Interdependencies Between Genetic and Epigenetic Events in Colorectal Cancer.
J. Comput. Biol.
Irina Balaur, Mansoor A. S. Saqi, Ana Barat, Artem Lysenko, Alexander Mazein, Christopher J. Rawlings, Heather J. Ruskin, Charles Auffray
2016 J jnl
Representing and querying disease networks using graph databases.
BioData Min.
Artem Lysenko, Irina A. Roznovat, Mansoor A. S. Saqi, Alexander Mazein, Christopher J. Rawlings, Charles Auffray
2016 J jnl
STON: exploring biological pathways using the SBGN standard and graph databases.
BMC Bioinform.
Vasundra Touré, Alexander Mazein, Dagmar Waltemath, Irina Balaur, Mansoor A. S. Saqi, Ron Henkel, Johann Pellet, Charles Auffray
2013 J jnl
Affinity analysis of differentially expressed genes in hepatocytes expressing HCV core genotype 1b or 3a.
Biosyst.
Tommaso Mazza, Stefano Castellana, Angelo Andriulli, Charles Auffray, Manlio Vinciguerra, Valerio Pazienza
2009 J jnl
Computational disease modeling - fact or fiction?
BMC Syst. Biol.
Jesper Tegnér, Albert Compte, Charles Auffray, Gary An, Gunnar Cedersund, Gilles Clermont, Boris S. Gutkin, Zoltán N. Oltvai, Klaas Enno Stephan, Randy Thomas, Pablo Villoslada
2005 J jnl
The Human Anatomic Gene Expression Library (H-ANGEL), the H-Inv integrative display of human gene expression across disparate technologies and platforms.
Nucleic Acids Res.
Motohiko Tanino, Marie-Anne Debily, Takuro Tamura, Teruyoshi Hishiki, Osamu Ogasawara, Katsuji Murakawa, Shoko Kawamoto, Kouichi Itoh, Shinya Watanabe, Sandro José de Souza, Sandrine Imbeaud, Esther Graudens, Eric Eveno, Phillip Hilton, Yukio Sudo, Janet Kelso, Kazuho Ikeo, Tadashi Imanishi, Takashi Gojobori, Charles Auffray, Winston Hide, Kousaku Okubo
2003 — conf
Issues in Computational Methods for Functional Genomics and Systems Biology.
CMSB
Magali Roux-Rouquié, Leroy E. Hood, Sandrine Imbeaud, Charles Auffray
1984 J jnl
A program for prediction of protein secondary structure from nucleotide sequence data: application to histocompatibility antigens.
Nucleic Acids Res.
Jiri Novotny, Charles Auffray