Chakra Chennubhotla

18 papers A* 1A 1B 2Journal 6Unranked 8
YearRankTypeTitle / Venue / Authors
2024 conf
SciPy
Brian Falkenstein, Shannon Quinn, Chakra Chennubhotla, Filippo Pullara, Raymond Yan
2020 J jnl
J. Open Source Softw.
Mojtaba Sedigh Fazli, Marcus Hill, Andrew Durden, Rachel Mattson, Allyson T. Loy, Barbara Reaves, Abigail Courtney, Frederick D. Quinn, Chakra Chennubhotla, Shannon Quinn
2018 J jnl
CoRR
Charles Lu, Maurice Marx, Maliha Zahid, Cecilia W. Lo, Chakra Chennubhotla, Shannon P. Quinn
2007 conf
ISMB/ECCB (Supplement of Bioinformatics)
Eran Eyal, Chakra Chennubhotla, Lee-Wei Yang, Ivet Bahar
2007 J jnl
PLoS Comput. Biol.
Chakra Chennubhotla, Ivet Bahar
2007 J jnl
J. Comput. Biol.
Chakra Chennubhotla, Ivet Bahar
2007 J jnl
PLoS Comput. Biol.
Chakra Chennubhotla, Ivet Bahar
2006 B conf
RECOMB
Chakra Chennubhotla, Ivet Bahar
2006 J jnl
BMC Bioinform.
Illés J. Farkas, Chuang Wu, Chakra Chennubhotla, Ivet Bahar, Zoltán N. Oltvai
2004 conf
NIPS
Chakra Chennubhotla, Allan D. Jepson
2004 conf
ICPR (2)
Chakra Chennubhotla, Allan D. Jepson
2004 A conf
BMVC
Francisco J. Estrada, Allan D. Jepson, Chakra Chennubhotla
2003 conf
WIRN
Chakra Chennubhotla, Alberto Paccanaro
2003 B conf
IJCNN
Alberto Paccanaro, Chakra Chennubhotla, James A. Casbon, Mansoor A. S. Saqi
2002 conf
NIPS
Chakra Chennubhotla, Allan D. Jepson
2002 conf
ICPR (2)
Chakra Chennubhotla, Allan D. Jepson, John Midgley
2001 A* conf
ICCV
Chakra Chennubhotla, Allan D. Jepson
1994 conf
ICPR (1)
David W. Jacobs, Chakra Chennubhotla
Dockerfile
← Index Dockerfile dockerfile
FROM python:3.12-slim

# Prevent interactive prompts during package installation
ENV DEBIAN_FRONTEND=noninteractive

# Install system dependencies (build tools will be removed after pip install).
# curl + ca-certificates + gnupg are needed to add the NodeSource repository
# for the JS analysis toolchain (webcrack + @nodesecure/js-x-ray).
RUN apt-get update && apt-get install -y \
    git \
    gcc \
    g++ \
    build-essential \
    libmagic1 \
    file \
    libqt5core5a \
    libqt5gui5 \
    libqt5widgets5 \
    default-jre-headless \
    curl \
    ca-certificates \
    gnupg \
    && rm -rf /var/lib/apt/lists/*

# Install Node.js 22 LTS (needed by webcrack and @nodesecure/js-x-ray). Pinning
# to 22.x because that's the active LTS — bumping to a future major is a
# deliberate Dockerfile change, not a silent upgrade on rebuild.
RUN curl -fsSL https://deb.nodesource.com/setup_22.x | bash - && \
    apt-get install -y nodejs && \
    rm -rf /var/lib/apt/lists/*

# webcrack is the deobfuscator (CLI on PATH). Pinned to 2.16.0 — released
# 2026-04-25, last verified working with our subprocess invocation. Bumping
# this is a deliberate change so a future regression in webcrack does not
# show up as a silent JSDeobfuscation behaviour shift on image rebuild.
RUN npm install -g webcrack@2.16.0

# Create application directory
WORKDIR /app

# Copy requirements and install Python dependencies
COPY requirements.txt .
RUN pip3 install --no-cache-dir -r requirements.txt

# Remove build dependencies to reduce image size. curl + gnupg are kept —
# curl is widely useful and gnupg is small. Node.js stays.
RUN apt-get remove -y gcc g++ build-essential git && \
    apt-get autoremove -y && \
    apt-get clean && \
    rm -rf /var/lib/apt/lists/*

# Copy application code (explicit files to help debug .dockerignore issues)
COPY redb/ ./redb/
COPY start.py .
COPY scripts/ ./scripts/

# Install @nodesecure/js-x-ray locally next to its bundled Node bridge so the
# Python wrapper's `node_modules/@nodesecure/js-x-ray` existence check passes
# without any runtime configuration. Version is pinned in the package.json.
# The npm install also triggers the `postinstall: patch-package` hook which
# re-applies the local patch in scripts/patches/ — currently a one-line fix
# for a `from "repl"` → `from "module"` import in [email protected] that breaks
# on Node 22 patches above ~22.10. Drop the patch when js-x-ray ships a fix.
RUN cd /app/redb/extractors/js_extractors/scripts && npm install --omit=dev

# Set up logging path and create logs directory
ENV LOG_FILE_PATH="/app/logs/"
RUN mkdir -p /app/logs

# Environment variables for tools (snapshot-style paths)
ENV CAPA_PATH="/usr/bin/capa"
ENV DIE_PATH="/usr/bin/nfdc"
ENV GORESYM_PATH="/usr/bin/GoReSym"
ENV JADX_PATH="/opt/deploy/jadx/bin/jadx"
ENV APKTOOL_PATH="/usr/local/bin/apktool"
ENV MALCONTENT_PATH="/usr/local/bin/mal"
ENV PATH="/usr/bin:/opt/binaryninja:${PATH}"
ENV PYTHONPATH="/opt/binaryninja/python"

# Tool timeouts
ENV CAPA_TIMEOUT="300"
ENV DIE_TIMEOUT="180"
ENV MALCONTENT_TIMEOUT="300"
ENV JADX_TIMEOUT="600"
ENV BINJA_TIMEOUT="1200"
ENV DECOMPILE_EXTRACTOR_TIMEOUT="2580"

ENV MALCONTENT_FORMATS=pebin,elf,macho,apk,javascript

# JS analysis toolchain. webcrack is on PATH from the global npm install;
# js-x-ray's Python wrapper finds the bundled Node bridge at the default
# location (no env needed). Override these in .env / Nomad if you swap tools.
ENV JS_DEOBFUSCATOR_PATH="webcrack"
ENV JS_DEOBFUSCATE_TIMEOUT="60"
ENV JS_XRAY_TIMEOUT="60"

# Copy the Binary Ninja setup script
COPY scripts/setup-and-run.sh /usr/local/bin/setup-and-run.sh
RUN chmod +x /usr/local/bin/setup-and-run.sh

# Create non-root user for security
RUN useradd -m -u 1000 analyzer
RUN chown -R analyzer:analyzer /app /app/logs
USER analyzer

# Set entrypoint to setup script for Binary Ninja installation (runtime)
ENTRYPOINT ["/usr/local/bin/setup-and-run.sh"]

# Set working directory
WORKDIR /app

# Default command - supports both feature extraction and decompilation
CMD ["python3", "start.py", "--nomad-job"]