Cem M. Deniz

14 papers Journal 10Unranked 4
YearRankTypeTitle / Venue / Authors
2026 J jnl
CoRR
Haresh Rengaraj Rajamohan, Xiang Gao, Weicheng Zhu, Shih-Lun Huang, Long Chen, Gabe Schulman, Huizhen Jin, Shengduo Li, Yixuan Wang, Huidi Yang, Kyunghyun Cho, Cem M. Deniz, Narges Razavian
2026 J jnl
CoRR
Haresh Rengaraj Rajamohan, Yuxuan Chen, Kyunghyun Cho, Cem M. Deniz
2025 J jnl
Signal Image Video Process.
Haresh Rengaraj Rajamohan, Richard Kijowski, Kyunghyun Cho, Cem M. Deniz
2025 J jnl
Comput. Biol. Medicine
Ozkan Cigdem, Eisa Hedayati, Haresh Rengaraj Rajamohan, Kyunghyun Cho, Gregory Chang, Richard Kijowski, Cem M. Deniz
2025 J jnl
CoRR
Haresh Rengaraj Rajamohan, Xiang Gao, Weicheng Zhu, Shih-Lun Huang, Long Chen, Kyunghyun Cho, Cem M. Deniz, Narges Razavian
2024 conf
ML4H@NeurIPS
Haoxu Huang, Cem M. Deniz, Kyunghyun Cho, Sumit Chopra, Divyam Madaan
2024 J jnl
CoRR
Haoxu Huang, Cem M. Deniz, Kyunghyun Cho, Sumit Chopra, Divyam Madaan
2024 J jnl
CoRR
Chaojie Zhang, Shengjia Chen, Ozkan Cigdem, Haresh Rengaraj Rajamohan, Kyunghyun Cho, Richard Kijowski, Cem M. Deniz
2024 J jnl
CoRR
Haresh Rengaraj Rajamohan, Richard Kijowski, Kyunghyun Cho, Cem M. Deniz
2023 conf
MIDL
Haoxu Huang, Samyak Rawlekar, Sumit Chopra, Cem M. Deniz
2020 conf
ISBI
Bofei Zhang, Jimin Tan, Kyunghyun Cho, Gregory Chang, Cem M. Deniz
2020 conf
Computer-Aided Diagnosis
Jimin Tan, Bofei Zhang, Kyunghyun Cho, Gregory Chang, Cem M. Deniz
2020 J jnl
CoRR
Arjun D. Desai, Francesco Calivá, Claudia Iriondo, Naji Khosravan, Aliasghar Mortazi, Sachin Jambawalikar, Drew A. Torigian, Jutta Ellermann, Mehmet Akçakaya, Ulas Bagci, Radhika Tibrewala, Io Flament, Matthew O'Brien, Sharmila Majumdar, Mathias Perslev, Akshay Pai, Christian Igel, Erik B. Dam, Sibaji Gaj, Mingrui Yang, Kunio Nakamura, Xiaojuan Li, Cem M. Deniz, Vladimir Juras, Ravinder Regatte, Garry Gold, Brian A. Hargreaves, Valentina Pedoia, Akshay S. Chaudhari
2017 J jnl
CoRR
Cem M. Deniz, Spencer Hallyburton, Arakua Welbeck, Stephen Honig, Kyunghyun Cho, Gregory Chang
redb/extractors/basicproperties.py
← Index redb/extractors/basicproperties.py python
from dataclasses import asdict
import inspect
import os
import magic
from magika import Magika
from datetime import datetime, timezone
from typing import Any, List, Tuple

from redb.extractors.enum import Tag
from redb.models.dataclasses import BasicProperties
from redb.extractors.extractor import Extractor


class BasicPropertiesExtractor(Extractor):

    def __init__(
        self,
        filepath,
        log,
        exporters=None,
        index_prefix=None,
        elastic_index=None,
        known_benign=False,
        known_malicious=False,
        parent_sha256=None,
        precomputed_hashes=None,
        is_fat=None,
        child_sha256=None,
        child_architecture=None,
        child_filetype=None,
        first_seen=None,
    ):
        super().__init__(
            filepath,
            log,
            exporters=exporters,
            index_prefix=index_prefix,
            elastic_index=elastic_index,
            known_benign=known_benign,
            known_malicious=known_malicious,
            precomputed_hashes=precomputed_hashes,
        )
        self.basic_properties = None
        self.elastic_index = self.index_prefix + "-basic_properties"
        self.is_packed = None
        self.parent_sha256 = parent_sha256  # For FAT Mach-O slices, points to container hash
        self.is_fat = is_fat  # True for FAT Mach-O containers, None otherwise
        self.child_sha256 = child_sha256  # SHA256 hashes of children (FAT slices, zip contents)
        self.child_architecture = child_architecture  # Architecture names for FAT Mach-O slices
        self.child_filetype = child_filetype  # Magika filetypes for children (useful for zip archives)
        self.first_seen = first_seen  # From catalog_samples, None for local files

    def tag(self):
        return Tag.BASIC_PROPERTIES.value

    def _extract_basic_properties(self):
        self.log.debug(inspect.currentframe().f_code.co_name)
        filename = None  # Reserved for future use
        sample_name = os.path.basename(self.filepath)
        file_entropy = round(self.calculate_entropy(self.binary), 3)
        type_ = magic.from_buffer(self.binary)
        type_mime = magic.from_buffer(self.binary, mime=True)
        type_magika = Magika().identify_bytes(self.binary).output.label
        size = len(self.binary)
        self.basic_properties = BasicProperties(
            filename, sample_name, size, type_, type_mime, type_magika,
            file_entropy, self.is_packed, self.is_fat, self.child_sha256,
            self.child_architecture, self.child_filetype,
            first_seen=str(self.first_seen) if self.first_seen else None,
        )
        self.log.debug(f"Basic Properties dump: {asdict(self.basic_properties)}")

    def extract(self):
        self.log.debug(inspect.currentframe().f_code.co_name)
        try:
            self._extract_basic_properties()
            # self.export_to_elastic([self.basic_properties])
            return self.basic_properties
        except Exception as e:
            self.log.error(f"Extract basic properties error {self.hash.sha256} Exception: {e}")
            return None

    def prepare_export_data(self, exporter_type: str) -> Any:
        if exporter_type == "ElasticsearchExporter":
            return self.basic_properties
        elif exporter_type == "ClickHouseExporter":
            data = [[
                self.sha256,
                self.md5,
                self.sha1,
                self.parent_sha256,  # NULL for standalone/FAT, fat_hash for slices
                self.basic_properties.child_sha256 or [],  # SHA256 hashes of children
                self.basic_properties.child_architecture or [],  # Architecture names for FAT slices
                self.basic_properties.child_filetype or [],  # Magika filetypes for children
                self.basic_properties.is_fat,  # True for FAT Mach-O containers, NULL otherwise
                self.basic_properties.filename,
                self.basic_properties.sample_name,
                self.basic_properties.filesize,
                self.basic_properties.file_entropy,
                self.basic_properties.filetype,
                self.basic_properties.filetype_mime,
                self.basic_properties.filetype_magika,
                self.first_seen or datetime(1970, 1, 1, tzinfo=timezone.utc),  # From catalog_samples, epoch zero for local files (uses original datetime, not string)
                datetime.now(timezone.utc)
            ]]

            column_names = [
                'sha256', 'md5', 'sha1', 'parent_sha256', 'child_sha256', 'child_architecture', 'child_filetype',
                'is_fat', 'filename', 'sample_name',
                'filesize', 'file_entropy', 'filetype', 'filetype_mime',
                'filetype_magika', 'first_seen', 'analysis_date'
            ]

            column_type_names = [
                'String', 'String', 'String', 'Nullable(String)',
                'Array(FixedString(64))', 'Array(LowCardinality(String))', 'Array(LowCardinality(String))',
                'Nullable(UInt8)', 'Nullable(String)', 'String',
                'UInt64', 'Float64', 'LowCardinality(String)',
                'LowCardinality(String)', 'LowCardinality(String)',
                'DateTime64(3, \'UTC\')',
                'DateTime64(3, \'UTC\')'
            ]

            return data, column_names, column_type_names

    def get_clickhouse_table(self) -> str:
        return "redb_basic_properties"