Cecilia Clementi

18 papers Journal 15Unranked 3
YearRankTypeTitle / Venue / Authors
2026 J jnl
CoRR
Yu Xie, Ludwig Winkler, Lixin Sun, Sarah Lewis, Adam Evan Foster, José Jiménez-Luna, Tim Hempel, Michael Gastegger, Yaoyi Chen, Iryna Zaporozhets, Cecilia Clementi, Christopher M. Bishop, Frank Noé
2023 J jnl
Briefings Bioinform.
Anja Conev, Maurício Menegatti Rigo, Didier Devaurs, André Faustino Fonseca, Hussain Kalavadwala, Martiela Vaz de Freitas, Cecilia Clementi, Geancarlo Zanatta, Dinler Amaral Antunes, Lydia E. Kavraki
2023 J jnl
CoRR
Marloes Arts, Victor Garcia Satorras, Chin-Wei Huang, Daniel Zügner, Marco Federici, Cecilia Clementi, Frank Noé, Robert Pinsler, Rianne van den Berg
2022 J jnl
CoRR
Jonas Köhler, Yaoyi Chen, Andreas Krämer, Cecilia Clementi, Frank Noé
2022 J jnl
CoRR
Maciej Majewski, Adrià Pérez, Philipp Thölke, Stefan Doerr, Nicholas E. Charron, Toni Giorgino, Brooke E. Husic, Cecilia Clementi, Frank Noé, Gianni De Fabritiis
2021 J jnl
Nat. Comput. Sci.
Xingcheng Lin, Jason T. George, Nicholas P. Schafer, Kevin Ng Chau, Michael E. Birnbaum, Cecilia Clementi, José N. Onuchic, Herbert Levine
2021 J jnl
Entropy
Feliks Nüske, Péter Koltai, Lorenzo Boninsegna, Cecilia Clementi
2020 J jnl
CoRR
Stefan Doerr, Maciej Majewski, Adrià Pérez, Andreas Krämer, Cecilia Clementi, Frank Noé, Toni Giorgino, Gianni De Fabritiis
2019 J jnl
CoRR
Frank Noé, Alexandre Tkatchenko, Klaus-Robert Müller, Cecilia Clementi
2019 conf
ISC Workshops
John R. Ossyra, Ada Sedova, Arnold N. Tharrington, Frank Noé, Cecilia Clementi, Jeremy C. Smith
2019 J jnl
CoRR
Feliks Nüske, Patrick Gelß, Stefan Klus, Cecilia Clementi
2018 J jnl
CoRR
Jiang Wang, Christoph Wehmeyer, Frank Noé, Cecilia Clementi
2016 J jnl
CoRR
Vivekanandan Balasubramanian, Iain Bethune, Ardita Shkurti, Elena Breitmoser, Eugen Hruska, Cecilia Clementi, Charles A. Laughton, Shantenu Jha
2016 conf
eScience
Vivekanandan Balasubramanian, Iain Bethune, Ardita Shkurti, Elena Breitmoser, Eugen Hruska, Cecilia Clementi, Charles A. Laughton, Shantenu Jha
2014 J jnl
PLoS Comput. Biol.
Mary A. Rohrdanz, Wenwei Zheng, Bradley Lambeth, Jocelyne Vreede, Cecilia Clementi
2013 conf
XSEDE
Mary A. Rohrdanz, Wenwei Zheng, Bradley Lambeth, Cecilia Clementi
2007 J jnl
Algorithmica
Amarda Shehu, Cecilia Clementi, Lydia E. Kavraki
2006 J jnl
Proc. Natl. Acad. Sci. USA
Payel Das, Mark Moll, Hernán Stamati, Lydia E. Kavraki, Cecilia Clementi
docs/apk-feature-schema.md
← Index docs/apk-feature-schema.md markdown
# APK Feature Analysis — ClickHouse Schema

All tables follow the `ReplacingMergeTree()` pattern (no version column — latest
insert wins on deduplication).

**Companion schema:** `docs/apk-code-schema.md` (code-analysis tables)

---

## Table overview

| # | Table | Engine | Key |
|---|-------|--------|-----|
| 1 | `redb_apk_features` | ReplacingMergeTree | `sha256` |
| 2 | `redb_apk_components` | ReplacingMergeTree | `(sha256, component_type, class_name)` |
| 3 | `redb_apk_manifest` | ReplacingMergeTree | `sha256` |
| 4 | `redb_apk_permissions` | ReplacingMergeTree | `(sha256, permission_name)` |
| 5 | `redb_apk_signature` | ReplacingMergeTree | `sha256` |
| 6 | `redb_apk_certificates` | ReplacingMergeTree | `(sha256, certificate_thumbprint)` |
| 7 | `redb_apk_dex` | ReplacingMergeTree | `(sha256, dex_sha256)` |
| 8 | `redb_apk_dex_api_usage` | ReplacingMergeTree | `(sha256, dex_sha256, api_category)` |
| 9 | `redb_apk_resources` | ReplacingMergeTree | `(sha256, resource_path)` |
| 10 | `redb_apk_native_libs` | ReplacingMergeTree | `(sha256, lib_abi, lib_filename)` |
| 11 | `redb_apk_inconsistency_tests` | ReplacingMergeTree | `sha256` |

---

## Table 1: `redb_apk_features`

Core metadata — one row per APK.

```sql
CREATE TABLE IF NOT EXISTS redb_apk_features (
    sha256              FixedString(64),
    package_name        Nullable(String),
    app_name            Nullable(String),
    version_code        Nullable(UInt32),
    version_name        Nullable(String),
    min_sdk_version     Nullable(UInt16),
    target_sdk_version  Nullable(UInt16),
    compile_sdk_version Nullable(UInt16),
    main_activity       Nullable(String),
    is_debuggable       UInt8,
    allow_backup        UInt8,
    uses_cleartext_traffic UInt8,
    supported_abis      Array(String),
    dex_count           UInt16,
    total_dex_size      UInt64,
    total_file_count    UInt32,
    has_native_code     UInt8,
    has_assets          UInt8,
    uses_libraries      Array(String),
    earliest_content_modification Nullable(String),
    latest_content_modification   Nullable(String),
    contains_embedded_apk UInt8,
    analysis_date       DateTime64(3, 'UTC')
) ENGINE = ReplacingMergeTree()
ORDER BY sha256;
```

## Table 2: `redb_apk_components`

Manifest components — one row per component.

```sql
CREATE TABLE IF NOT EXISTS redb_apk_components (
    sha256              FixedString(64),
    component_type      LowCardinality(String),   -- 'activity', 'service', 'receiver', 'provider'
    class_name          String,
    is_exported         UInt8,
    intent_actions      Array(String),
    intent_categories   Array(String),
    analysis_date       DateTime64(3, 'UTC')
) ENGINE = ReplacingMergeTree()
ORDER BY (sha256, component_type, class_name);
```

## Table 3: `redb_apk_manifest`

Manifest summary — one row per APK.

```sql
CREATE TABLE IF NOT EXISTS redb_apk_manifest (
    sha256              FixedString(64),
    activity_count      UInt16,
    service_count       UInt16,
    receiver_count      UInt16,
    provider_count      UInt16,
    intent_filters_by_action   Array(String),
    intent_filters_by_category Array(String),
    uses_features       Array(String),
    manifest_xml        Nullable(String),
    analysis_date       DateTime64(3, 'UTC')
) ENGINE = ReplacingMergeTree()
ORDER BY sha256;
```

## Table 4: `redb_apk_permissions`

Permissions — one row per permission per APK.

```sql
CREATE TABLE IF NOT EXISTS redb_apk_permissions (
    sha256              FixedString(64),
    permission_name     String,
    protection_level    LowCardinality(String),
    is_custom           UInt8,
    analysis_date       DateTime64(3, 'UTC')
) ENGINE = ReplacingMergeTree()
ORDER BY (sha256, permission_name);
```

## Table 5: `redb_apk_signature`

Signing info — one row per APK. The `apk_signer_*` fields identify the actual
signer certificate using V3→V2→V1 priority (V2/V3: `certificates[0]` per spec;
V1: `SignerInfo.issuerAndSerialNumber` matching). Prefixed with `apk_` to
distinguish from PE/Mach-O signer fields in cross-format queries.

```sql
CREATE TABLE IF NOT EXISTS redb_apk_signature (
    sha256              FixedString(64),
    is_signed           UInt8,
    signature_scheme_versions Array(UInt8),
    number_of_certificates UInt8,
    apk_signer_subject  Nullable(String),
    apk_signer_issuer   Nullable(String),
    analysis_date       DateTime64(3, 'UTC')
) ENGINE = ReplacingMergeTree()
ORDER BY sha256;
```

## Table 6: `redb_apk_certificates`

Certificate details — one row per certificate per APK. The
`certificate_source_scheme` column tracks which signing scheme(s) the
certificate was found in (`'v1'`, `'v2'`, `'v3'`, or `'v1,v2'` when the same
certificate appears across multiple schemes).

```sql
CREATE TABLE IF NOT EXISTS redb_apk_certificates (
    sha256                    FixedString(64),
    certificate_subject       String,
    certificate_issuer        String,
    certificate_serial_number String,
    certificate_valid_from    DateTime64(3, 'UTC'),
    certificate_valid_to      DateTime64(3, 'UTC'),
    certificate_thumbprint    FixedString(40),
    certificate_algorithm     LowCardinality(String),
    key_size                  Nullable(UInt16),
    is_self_signed            UInt8,
    certificate_source_scheme LowCardinality(String),
    analysis_date             DateTime64(3, 'UTC')
) ENGINE = ReplacingMergeTree()
ORDER BY (sha256, certificate_thumbprint);
```

## Table 7: `redb_apk_dex`

DEX file analysis — one row per DEX file.

```sql
CREATE TABLE IF NOT EXISTS redb_apk_dex (
    sha256              FixedString(64),
    dex_sha256          FixedString(64),
    dex_filename        String,
    dex_tlsh            Nullable(String),
    dex_class_count     UInt32,
    dex_method_count    UInt32,
    dex_string_count    UInt32,
    dex_top_packages    String,                    -- JSON
    dex_obfuscation_indicators String,             -- JSON
    analysis_date       DateTime64(3, 'UTC')
) ENGINE = ReplacingMergeTree()
ORDER BY (sha256, dex_sha256);
```

## Table 8: `redb_apk_dex_api_usage`

DEX API usage — one row per category per DEX.

```sql
CREATE TABLE IF NOT EXISTS redb_apk_dex_api_usage (
    sha256              FixedString(64),
    dex_sha256          FixedString(64),
    api_category        LowCardinality(String),
    api_calls           Array(String),
    analysis_date       DateTime64(3, 'UTC')
) ENGINE = ReplacingMergeTree()
ORDER BY (sha256, dex_sha256, api_category);
```

## Table 9: `redb_apk_resources`

Resource inventory — one row per resource.

```sql
CREATE TABLE IF NOT EXISTS redb_apk_resources (
    sha256              FixedString(64),
    resource_path       String,
    resource_size       UInt64,
    resource_sha256     FixedString(64),
    resource_magika     LowCardinality(String),
    resource_entropy             Float32,
    is_suspicious       UInt8,
    analysis_date       DateTime64(3, 'UTC')
) ENGINE = ReplacingMergeTree()
ORDER BY (sha256, resource_path);
```

## Table 10: `redb_apk_native_libs`

Native libraries — one row per `.so` file.

```sql
CREATE TABLE IF NOT EXISTS redb_apk_native_libs (
    sha256              FixedString(64),
    lib_abi             LowCardinality(String),
    lib_filename        String,
    lib_size            UInt64,
    lib_sha256          FixedString(64),
    lib_is_known_packer UInt8,
    analysis_date       DateTime64(3, 'UTC')
) ENGINE = ReplacingMergeTree()
ORDER BY (sha256, lib_abi, lib_filename);
```

## Table 11: `redb_apk_inconsistency_tests`

Inconsistency tests — one row per APK.

```sql
CREATE TABLE IF NOT EXISTS redb_apk_inconsistency_tests (
    sha256              FixedString(64),
    test_zip_bomb                    Nullable(UInt8),
    test_zip_duplicate_entries       Nullable(UInt8),
    test_zip_path_traversal          Nullable(UInt8),
    test_zip_suspicious_timestamps   Nullable(UInt8),
    test_hidden_dex_files            Nullable(UInt8),
    test_manifest_component_mismatch Nullable(UInt8),
    test_debuggable_release          Nullable(UInt8),
    test_emulator_detection_strings  Nullable(UInt8),
    test_debugger_detection          Nullable(UInt8),
    test_root_detection              Nullable(UInt8),
    analysis_date       DateTime64(3, 'UTC')
) ENGINE = ReplacingMergeTree()
ORDER BY sha256;
```