Catharina Olsen

13 papers Journal 13
YearRankTypeTitle / Venue / Authors
2026 J jnl
Unlocking Health Data for Research: Legal, Technical, and Organisational Lessons from a Belgian Interdisciplinary Case Study.
J. Heal. Informatics Res.
Audrey Van Scharen, Karen Cruyt, Jeroen Colon, Selene De Sutter, Johnny Duerinck, Ramses Forsyth, Catharina Olsen, Paul Quinn, Konstantina Tzavella, Sonia Van Dooren, Wim Waelput, Arne Witdouck, Pieter Cornu, Jef Vandemeulebroucke, Wim F. Vranken
2025 J jnl
Combining evolution and protein language models for an interpretable cancer driver mutation prediction with D2Deep.
Briefings Bioinform.
Konstantina Tzavella, Adrián Díaz, Catharina Olsen, Wim F. Vranken
2023 J jnl
A workflow to study mechanistic indicators for driver gene prediction with Moonlight.
Briefings Bioinform.
Mona Nourbakhsh, Astrid Saksager, Nikola Tom, Xi Steven Chen, Antonio Colaprico, Catharina Olsen, Matteo Tiberti, Elena Papaleo
2023 J jnl
EDIR: exome database of interspersed repeats.
Bioinform.
Laura D. T. Vo Ngoc, Randy Osei, Katrin Dohr, Catharina Olsen, Sara Seneca, Alexander Gheldof
2019 J jnl
New functionalities in the TCGAbiolinks package for the study and integration of cancer data from GDC and GTEx.
PLoS Comput. Biol.
Mohamed Mounir, Marta Lucchetta, Tiago Chedraoui Silva, Catharina Olsen, Gianluca Bontempi, Xi Chen, Houtan Noushmehr, Antonio Colaprico, Elena Papaleo
2018 J jnl
TCGAbiolinksGUI: A graphical user interface to analyze cancer molecular and clinical data.
F1000Research
Tiago Chedraoui Silva, Antonio Colaprico, Catharina Olsen, Tathiane M. Malta, Gianluca Bontempi, Michele Ceccarelli, Benjamin P. Berman, Houtan Noushmehr
2016 J jnl
PharmacoGx: an R package for analysis of large pharmacogenomic datasets.
Bioinform.
Petr Smirnov, Zhaleh Safikhani, Nehme Hachem, Dong Wang, Adrian She, Catharina Olsen, Mark Freeman, Heather Marie Selby, Deena M. A. Gendoo, Patrick Grossmann, Andrew H. Beck, Hugo J. W. L. Aerts, Mathieu Lupien, Anna Goldenberg, Benjamin Haibe-Kains
2015 J jnl
NetBenchmark: a bioconductor package for reproducible benchmarks of gene regulatory network inference.
BMC Bioinform.
Pau Bellot, Catharina Olsen, Philippe Salembier, Albert Oliveras-Vergés, Patrick E. Meyer
2013 J jnl
Research and applications: Comparison and validation of genomic predictors for anticancer drug sensitivity.
J. Am. Medical Informatics Assoc.
Simon Papillon-Cavanagh, Nicolas De Jay, Nehme Hachem, Catharina Olsen, Gianluca Bontempi, Hugo J. W. L. Aerts, John Quackenbush, Benjamin Haibe-Kains
2013 J jnl
mRMRe: an R package for parallelized mRMR ensemble feature selection.
Bioinform.
Nicolas De Jay, Simon Papillon-Cavanagh, Catharina Olsen, Nehme Hachem, Gianluca Bontempi, Benjamin Haibe-Kains
2012 J jnl
Predictive networks: a flexible, open source, web application for integration and analysis of human gene networks.
Nucleic Acids Res.
Benjamin Haibe-Kains, Catharina Olsen, Amira Djebbari, Gianluca Bontempi, Mick Correll, Christopher Bouton, John Quackenbush
2011 J jnl
Fourier spectral factor model for prediction of multidimensional signals.
Signal Process.
Abhilash Alexander Miranda, Catharina Olsen, Gianluca Bontempi
2009 J jnl
On the Impact of Entropy Estimation on Transcriptional Regulatory Network Inference Based on Mutual Information.
EURASIP J. Bioinform. Syst. Biol.
Catharina Olsen, Patrick E. Meyer, Gianluca Bontempi