Cathal Seoighe

18 papers Journal 16Unranked 2
YearRankTypeTitle / Venue / Authors
2024 J jnl
Performance assessment of computational tools to detect microsatellite instability.
Briefings Bioinform.
Harrison Anthony, Cathal Seoighe
2024 J jnl
Regulatory landscape enrichment analysis (RLEA): a computational toolkit for non-coding variant enrichment and cell type prioritization.
BMC Bioinform.
Samuel Rosean, Eric A. Sosa, Donal F. O'Shea, Srilakshmi M. Raj, Cathal Seoighe, John M. Greally
2022 J jnl
Random-effects meta-analysis of effect sizes as a unified framework for gene set analysis.
PLoS Comput. Biol.
Mohammad A. Makrooni, Donal O'Shea, Paul Geeleher, Cathal Seoighe
2016 J jnl
Consistency in large pharmacogenomic studies.
Nat.
Paul Geeleher, Eric R. Gamazon, Cathal Seoighe, Nancy J. Cox, Rong Stephanie Huang
2015 J jnl
Promiscuous mRNA splicing under the control of AIRE in medullary thymic epithelial cells.
Bioinform.
Peter Keane, Rhodri Ceredig, Cathal Seoighe
2015 J jnl
Seq-ing improved gene expression estimates from microarrays using machine learning.
BMC Bioinform.
Paul K. Korir, Paul Geeleher, Cathal Seoighe
2013 J jnl
CellMix: a comprehensive toolbox for gene expression deconvolution.
Bioinform.
Renaud Gaujoux, Cathal Seoighe
2013 J jnl
Gene-set analysis is severely biased when applied to genome-wide methylation data.
Bioinform.
Paul Geeleher, Lori Hartnett, Laurance J. Egan, Aaron Golden, Raja Affendi Raja Ali, Cathal Seoighe
2011 J jnl
Evidence for intron length conservation in a set of mammalian genes associated with embryonic development.
BMC Bioinform.
Cathal Seoighe, Paul K. Korir
2011 J jnl
Investigating the effect of paralogs on microarray gene-set analysis.
BMC Bioinform.
Andre J. Faure, Cathal Seoighe, Nicola J. Mulder
2010 J jnl
A flexible R package for nonnegative matrix factorization.
BMC Bioinform.
Renaud Gaujoux, Cathal Seoighe
2009 J jnl
Models of coding sequence evolution.
Briefings Bioinform.
Wayne Delport, Konrad Scheffler, Cathal Seoighe
2008 J jnl
MScanner: a classifier for retrieving Medline citations.
BMC Bioinform.
Graham L. Poulter, Daniel L. Rubin, Russ B. Altman, Cathal Seoighe
2006 J jnl
Maximum likelihood inference of imprinting and allele-specific expression from EST data.
Bioinform.
Cathal Seoighe, Victoria Nembaware, Konrad Scheffler
2006 J jnl
Robust inference of positive selection from recombining coding sequences.
Bioinform.
Konrad Scheffler, Darren P. Martin, Cathal Seoighe
2005 — conf
Very Low Power to Detect Asymmetric Divergence of Duplicated Genes.
Comparative Genomics
Cathal Seoighe, Konrad Scheffler
2004 J jnl
FRAGS: estimation of coding sequence substitution rates from fragmentary data.
BMC Bioinform.
Estienne C. Swart, Winston A. Hide, Cathal Seoighe
1997 — conf
Genome duplication and the evolution of gene Order and chromosome number in yeast.
German Conference on Bioinformatics
Cathal Seoighe, Denis C. Shields, Kenneth H. Wolfe