Carsten O. Daub

17 papers C 1Journal 14Unranked 1
YearRankTypeTitle / Venue / Authors
2020 J jnl
Ten simple rules for annotating sequencing experiments.
PLoS Comput. Biol.
Irene Stevens, Abdul Kadir Mukarram, Matthias Hörtenhuber, Terrence F. Meehan, Johan Rung, Carsten O. Daub
2018 J jnl
Shared activity patterns arising at genetic susceptibility loci reveal underlying genomic and cellular architecture of human disease.
PLoS Comput. Biol.
J. Kenneth Baillie, Andrew Bretherick, Christopher S. Haley, Sara Clohisey, Alan Gray, Lucile P. A. Neyton, Jeffrey Barrett, Eli A. Stahl, Albert Tenesa, Robin Andersson, J. Ben Brown, Geoffrey J. Faulkner, Marina Lizio, Ulf Schaefer, Carsten O. Daub, Masayoshi Itoh, Naoto Kondo, Timo Lassmann, Jun Kawai, IIBDGC Consortium, Damian Mole, Vladimir B. Bajic, Peter Heutink, Michael Rehli, Hideya Kawaji, Albin Sandelin, Harukazu Suzuki, Jack Satsangi, Christine A. Wells, Nir Hacohen, Tom C. Freeman, Yoshihide Hayashizaki, Piero Carninci, Alistair R. R. Forrest, David A. Hume
2015 J jnl
Transcriptional Dynamics Reveal Critical Roles for Non-coding RNAs in the Immediate-Early Response.
PLoS Comput. Biol.
Stuart Aitken, Shigeyuki Magi, Ahmad M. N. Alhendi, Masayoshi Itoh, Hideya Kawaji, Timo Lassmann, Carsten O. Daub, Erik Arner, Piero Carninci, Alistair R. R. Forrest, Yoshihide Hayashizaki, Levon M. Khachigian, Mariko Okada-Hatakeyama, Colin A. M. Semple
2014 J jnl
MOIRAI: A Compact Workflow System for CAGE Analysis.
BMC Bioinform.
Timo Lassmann, Akira Hasegawa, Carsten O. Daub, Piero Carninci, Yoshihide Hayashizaki
2011 — conf
Optimization of turn-back primers in isothermal amplification.
BIBM Workshops
Yasumasa Kimura, Michiel J. L. de Hoon, Shintaro Aoki, Yuri Ishizu, Carsten O. Daub, Alexander Lezhava, Erik Arner, Yoshihide Hayashizaki, Yuki Kawai, Yasushi Kogo
2011 J jnl
Profiling transcription initiation in human aged brain using deep-CAGE.
BMC Bioinform.
Margherita Francescatto, Luba Pardo, Patrizia Rizzu, Morana Vitezic, Javier Simón-Sánchez, Hazuki Takahashi, Carsten O. Daub, Piero Carninci, Peter Heutink
2011 J jnl
SAMStat: monitoring biases in next generation sequencing data.
Bioinform.
Timo Lassmann, Yoshihide Hayashizaki, Carsten O. Daub
2011 J jnl
Update of the FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation.
Nucleic Acids Res.
Hideya Kawaji, Jessica Severin, Marina Lizio, Alistair R. R. Forrest, Erik van Nimwegen, Michael Rehli, Kate Schroder, Katharine M. Irvine, Harukazu Suzuki, Piero Carninci, Yoshihide Hayashizaki, Carsten O. Daub
2010 J jnl
NGSView: an extensible open source editor for next-generation sequencing data.
Bioinform.
Erik Arner, Yoshihide Hayashizaki, Carsten O. Daub
2009 J jnl
Probabilistic resolution of multi-mapping reads in massively parallel sequencing data using MuMRescueLite.
Bioinform.
Takehiro Hashimoto, Michiel J. L. de Hoon, Sean M. Grimmond, Carsten O. Daub, Yoshihide Hayashizaki, Geoffrey J. Faulkner
2009 J jnl
SDRF2GRAPH - a visualization tool of a spreadsheet-based description of experimental processes.
BMC Bioinform.
Hideya Kawaji, Yoshihide Hayashizaki, Carsten O. Daub
2009 J jnl
TagDust - a program to eliminate artifacts from next generation sequencing data.
Bioinform.
Timo Lassmann, Yoshihide Hayashizaki, Carsten O. Daub
2008 J jnl
Employing conservation of co-expression to improve functional inference.
BMC Syst. Biol.
Carsten O. Daub, Erik L. L. Sonnhammer
2005 — —
Analysis of integrated transcriptomics and metabolomics data : a systems biology approach
Carsten O. Daub
2004 J jnl
Estimating mutual information using B-spline functions - an improved similarity measure for analysing gene expression data.
BMC Bioinform.
Carsten O. Daub, Ralf Steuer, Joachim Selbig, Sebastian Kloska
2003 J jnl
MetaGeneAlyse: analysis of integrated transcriptional and metabolite data.
Bioinform.
Carsten O. Daub, Sebastian Kloska, Joachim Selbig
2002 C conf
The mutual information: Detecting and evaluating dependencies between variables.
ECCB
Ralph E. Steuer, Jürgen Kurths, Carsten O. Daub, Janko Weise, Joachim Selbig