Carolyn J. Mattingly

27 papers C 1Journal 24Unranked 2
YearRankTypeTitle / Venue / Authors
2025 J jnl
Integrating AI-powered text mining from PubTator into the manual curation workflow at the Comparative Toxicogenomics Database.
Database J. Biol. Databases Curation
Thomas C. Wiegers, Allan Peter Davis, Jolene Wiegers, Daniela Sciaky, Fern Barkalow, Brent Wyatt, Melissa Strong, Roy McMorran, Sakib Abrar, Carolyn J. Mattingly
2023 J jnl
Comparative Toxicogenomics Database (CTD): update 2023.
Nucleic Acids Res.
Allan Peter Davis, Thomas C. Wiegers, Robin J. Johnson, Daniela Sciaky, Jolene Wiegers, Carolyn J. Mattingly
2021 J jnl
Comparative Toxicogenomics Database (CTD): update 2021.
Nucleic Acids Res.
Allan Peter Davis, Cynthia J. Grondin, Robin J. Johnson, Daniela Sciaky, Jolene Wiegers, Thomas C. Wiegers, Carolyn J. Mattingly
2019 J jnl
The Comparative Toxicogenomics Database: update 2019.
Nucleic Acids Res.
Allan Peter Davis, Cynthia J. Grondin, Robin J. Johnson, Daniela Sciaky, Roy McMorran, Jolene Wiegers, Thomas C. Wiegers, Carolyn J. Mattingly
2017 J jnl
The Comparative Toxicogenomics Database: update 2017.
Nucleic Acids Res.
Allan Peter Davis, Cynthia J. Grondin, Robin J. Johnson, Daniela Sciaky, Benjamin L. King, Roy McMorran, Jolene Wiegers, Thomas C. Wiegers, Carolyn J. Mattingly
2016 J jnl
Assessing the state of the art in biomedical relation extraction: overview of the BioCreative V chemical-disease relation (CDR) task.
Database J. Biol. Databases Curation
Chih-Hsuan Wei, Yifan Peng, Robert Leaman, Allan Peter Davis, Carolyn J. Mattingly, Jiao Li, Thomas C. Wiegers, Zhiyong Lu
2016 J jnl
BioCreative V CDR task corpus: a resource for chemical disease relation extraction.
Database J. Biol. Databases Curation
Jiao Li, Yueping Sun, Robin J. Johnson, Daniela Sciaky, Chih-Hsuan Wei, Robert Leaman, Allan Peter Davis, Carolyn J. Mattingly, Thomas C. Wiegers, Zhiyong Lu
2016 J jnl
ToxEvaluator: an integrated computational platform to aid the interpretation of toxicology study-related findings.
Database J. Biol. Databases Curation
Dennis J. Pelletier, Thomas C. Wiegers, Ahmed Enayetallah, C. Kibbey, Mark Gosink, P. Koza-Taylor, Carolyn J. Mattingly, M. Lawton
2015 J jnl
The Comparative Toxicogenomics Database's 10th year anniversary: update 2015.
Nucleic Acids Res.
Allan Peter Davis, Cynthia J. Grondin, Kelley Lennon-Hopkins, Cynthia A. Saraceni-Richards, Daniela Sciaky, Benjamin L. King, Thomas C. Wiegers, Carolyn J. Mattingly
2014 J jnl
BioC interoperability track overview.
Database J. Biol. Databases Curation
Donald C. Comeau, Riza Theresa Batista-Navarro, Hong-Jie Dai, Rezarta Islamaj Dogan, Antonio Jimeno-Yepes, Ritu Khare, Zhiyong Lu, Hernani Marques, Carolyn J. Mattingly, Mariana L. Neves, Yifan Peng, Rafal Rak, Fabio Rinaldi, Richard Tzong-Han Tsai, Karin Verspoor, Thomas C. Wiegers, Cathy H. Wu, W. John Wilbur
2014 J jnl
Web services-based text-mining demonstrates broad impacts for interoperability and process simplification.
Database J. Biol. Databases Curation
Thomas C. Wiegers, Allan Peter Davis, Carolyn J. Mattingly
2013 J jnl
A CTD-Pfizer collaboration: manual curation of 88 000 scientific articles text mined for drug-disease and drug-phenotype interactions.
Database J. Biol. Databases Curation
Allan Peter Davis, Thomas C. Wiegers, Phoebe M. Roberts, Benjamin L. King, Jean M. Lay, Kelley Lennon-Hopkins, Daniela Sciaky, Robin J. Johnson, Heather Keating, Nigel Greene, Robert Hernandez, Kevin J. McConnell, Ahmed Enayetallah, Carolyn J. Mattingly
2013 J jnl
The Comparative Toxicogenomics Database: update 2013.
Nucleic Acids Res.
Allan Peter Davis, Cynthia G. Murphy, Robin J. Johnson, Jean M. Lay, Kelley Lennon-Hopkins, Cynthia A. Saraceni-Richards, Daniela Sciaky, Benjamin L. King, Michael C. Rosenstein, Thomas C. Wiegers, Carolyn J. Mattingly
2012 J jnl
BioCreative-2012 Virtual Issue.
Database J. Biol. Databases Curation
Cathy H. Wu, Cecilia N. Arighi, Kevin Bretonnel Cohen, Lynette Hirschman, Martin Krallinger, Zhiyong Lu, Carolyn J. Mattingly, Alfonso Valencia, Thomas C. Wiegers, W. John Wilbur
2012 J jnl
Collaborative biocuration - text-mining development task for document prioritization for curation.
Database J. Biol. Databases Curation
Thomas C. Wiegers, Allan Peter Davis, Carolyn J. Mattingly
2012 J jnl
Disease model curation improvements at Mouse Genome Informatics.
Database J. Biol. Databases Curation
Susan M. Bello, Joel E. Richardson, Allan Peter Davis, Thomas C. Wiegers, Carolyn J. Mattingly, Mary E. Dolan, Cynthia L. Smith, Judith A. Blake, Janan T. Eppig
2012 J jnl
MEDIC: a practical disease vocabulary used at the Comparative Toxicogenomics Database.
Database J. Biol. Databases Curation
Allan Peter Davis, Thomas C. Wiegers, Michael C. Rosenstein, Carolyn J. Mattingly
2012 J jnl
Targeted journal curation as a method to improve data currency at the Comparative Toxicogenomics Database.
Database J. Biol. Databases Curation
Allan Peter Davis, Robin J. Johnson, Kelley Lennon-Hopkins, Daniela Sciaky, Michael C. Rosenstein, Thomas C. Wiegers, Carolyn J. Mattingly
2011 J jnl
The Comparative Toxicogenomics Database: update 2011.
Nucleic Acids Res.
Allan Peter Davis, Benjamin L. King, Susan Mockus, Cynthia G. Murphy, Cynthia A. Saraceni-Richards, Michael C. Rosenstein, Thomas C. Wiegers, Carolyn J. Mattingly
2011 J jnl
The curation paradigm and application tool used for manual curation of the scientific literature at the Comparative Toxicogenomics Database.
Database J. Biol. Databases Curation
Allan Peter Davis, Thomas C. Wiegers, Cynthia G. Murphy, Carolyn J. Mattingly
2011 — conf
Waiting for a Robust Disease Ontology: A Merger of OMIM and MeSH as a Practical Interim Solution.
ICBO
Susan M. Bello, Allan Peter Davis, Thomas C. Wiegers, Mary E. Dolan, Cynthia L. Smith, Joel E. Richardson, Judith A. Blake, Carolyn J. Mattingly, Janan T. Eppig
2009 J jnl
Comparative Toxicogenomics Database: a knowledgebase and discovery tool for chemical-gene-disease networks.
Nucleic Acids Res.
Allan Peter Davis, Cynthia G. Murphy, Cynthia A. Saraceni-Richards, Michael C. Rosenstein, Thomas C. Wiegers, Carolyn J. Mattingly
2009 J jnl
Genetic and environmental pathways to complex diseases.
BMC Syst. Biol.
Julia M. Gohlke, Reuben Thomas, Yonqing Zhang, Michael C. Rosenstein, Allan Peter Davis, Cynthia G. Murphy, Kevin G. Becker, Carolyn J. Mattingly, Christopher J. Portier
2009 J jnl
Text mining and manual curation of chemical-gene-disease networks for the Comparative Toxicogenomics Database (CTD).
BMC Bioinform.
Thomas C. Wiegers, Allan Peter Davis, K. Bretonnel Cohen, Lynette Hirschman, Carolyn J. Mattingly
2008 J jnl
An Evaluation of Information Content as a Metric for the Inference of Putative Conserved Noncoding Regions in DNA Sequences Using a Genetic Algorithms Approach.
IEEE ACM Trans. Comput. Biol. Bioinform.
Clare Bates Congdon, Joseph C. Aman, Gerardo M. Nava, H. Rex Gaskins, Carolyn J. Mattingly
2007 — conf
Towards Interactive Visualization for Exploring Conserved Motifs in Noncoding DNA Sequence.
FBIT
Clare Bates Congdon, H. Rex Gaskins, Gerardo M. Nava, Carolyn J. Mattingly
2005 C conf
Preliminary Results for GAMI: A Genetic Algorithms Approach to Motif Inference.
CIBCB
Clare Bates Congdon, Charles Fizer, Noah W. Smith, H. Rex Gaskins, Joseph C. Aman, Gerardo M. Nava, Carolyn J. Mattingly