Caroline Colijn

18 papers Journal 18
YearRankTypeTitle / Venue / Authors
2024 J jnl
A Vector Representation for Phylogenetic Trees.
CoRR
Cédric Chauve, Caroline Colijn, Louxin Zhang
2024 J jnl
Measuring genetic diversity across populations.
PLoS Comput. Biol.
Niloufar Abhari, Caroline Colijn, Arne Mooers, Paul F. Tupper
2023 J jnl
Genome-Wide Association with Uncertainty in the Genetic Similarity Matrix.
J. Comput. Biol.
Shijia Wang, Shufei Ge, Benjamin Sobkowiak, Liangliang Wang, Louis Grandjean, Caroline Colijn, Lloyd T. Elliott
2023 J jnl
Pneumococcal population dynamics: Investigating vaccine-induced changes through multiscale modelling.
PLoS Comput. Biol.
Nicola Mulberry, Alexander R. Rutherford, Caroline Colijn
2021 J jnl
COVID-19 in schools: Mitigating classroom clusters in the context of variable transmission.
PLoS Comput. Biol.
Paul F. Tupper, Caroline Colijn
2021 J jnl
Estimating Genetic Similarity Matrices Using Phylogenies.
J. Comput. Biol.
Shijia Wang, Shufei Ge, Caroline Colijn, Priscila Biller, Liangliang Wang, Lloyd T. Elliott
2020 J jnl
A Maximum Entropy Method for the Prediction of Size Distributions.
Entropy
Cornelia Metzig, Caroline Colijn
2020 J jnl
Classification of origin with feature selection and network construction for folk tunes.
Pattern Recognit. Lett.
Cornelia Metzig, Matthew Gould, Roshan Noronha, Roshani Abbey, Mark Sandler, Caroline Colijn
2020 J jnl
Quantifying the impact of COVID-19 control measures using a Bayesian model of physical distancing.
PLoS Comput. Biol.
Sean C. Anderson, Andrew M. Edwards, Madi Yerlanov, Nicola Mulberry, Jessica E. Stockdale, Sarafa A. Iyaniwura, Rebeca C. Falcao, Michael C. Otterstatter, Michael A. Irvine, Naveed Z. Janjua, Daniel Coombs, Caroline Colijn
2019 J jnl
Phylogenies from dynamic networks.
PLoS Comput. Biol.
Cornelia Metzig, Oliver Ratmann, Daniela Bezemer, Caroline Colijn
2017 J jnl
A curated genome-scale metabolic model of Bordetella pertussis metabolism.
PLoS Comput. Biol.
Nick Fyson, Jerry King, Thomas Belcher, Andrew Preston, Caroline Colijn
2017 J jnl
Simultaneous inference of phylogenetic and transmission trees in infectious disease outbreaks.
PLoS Comput. Biol.
Don Klinkenberg, Jantien A. Backer, Xavier Didelot, Caroline Colijn, Jacco Wallinga
2016 J jnl
Asymptotic frequency of shapes in supercritical branching trees.
J. Appl. Probab.
Giacomo Plazzotta, Caroline Colijn
2016 J jnl
ClassTR: Classifying Within-Host Heterogeneity Based on Tandem Repeats with Application to
PLoS Comput. Biol.
Leonid Chindelevitch, Caroline Colijn, Prashini Moodley, Douglas Wilson, Ted Cohen
2013 J jnl
How the Dynamics and Structure of Sexual Contact Networks Shape Pathogen Phylogenies.
PLoS Comput. Biol.
Katy Robinson, Nick Fyson, Ted Cohen, Christophe Fraser, Caroline Colijn
2011 J jnl
Analysis of complex metabolic behavior through pathway decomposition.
BMC Syst. Biol.
Kuhn Ip, Caroline Colijn, Desmond S. Lun
2009 J jnl
Interpreting Expression Data with Metabolic Flux Models: Predicting
PLoS Comput. Biol.
Caroline Colijn, Aaron Brandes, Jeremy Zucker, Desmond S. Lun, Brian Weiner, Maha R. Farhat, Tan-Yun Cheng, D. Branch Moody, Megan Murray, James E. Galagan
2007 J jnl
Bifurcation and Bistability in a Model of Hematopoietic Regulation.
SIAM J. Appl. Dyn. Syst.
Caroline Colijn, Michael C. Mackey