Carole Frindel

50 papers A 1B 2C 1Journal 22Unranked 23
YearRankTypeTitle / Venue / Authors
2025 conf
iMIMIC@MICCAI
Guillaume Garret, Antoine Vacavant, Carole Frindel
2025 J jnl
CoRR
Guillaume Garret, Antoine Vacavant, Carole Frindel
2025 conf
ISBI
Mingtian Liu, Nima Hatami, Laura Mechtouff, Tae-Hee Cho, Carole Lartizien, Carole Frindel
2025 conf
MICCAI (15)
Mingtian Liu, Nima Hatami, Laura Mechtouff, Tae-Hee Cho, Carole Lartizien, Carole Frindel
2024 J jnl
CoRR
Ezequiel de la Rosa, Mauricio Reyes, Sook-Lei Liew, Alexandre Hutton, Roland Wiest, Johannes Kaesmacher, Uta Hanning, Arsany Hakim, Richard Zubal, Waldo Valenzuela, David Robben, Diana Maria Sima, Vincenzo Anania, Arne Brys, James A. Meakin, Anne Mickan, Gabriel Broocks, Christian Heitkamp, Shengbo Gao, Kongming Liang, Ziji Zhang, Md Mahfuzur Rahman Siddiquee, Andriy Myronenko, Pooya Ashtari, Sabine Van Huffel, Hyun-su Jeong, Chiho Yoon, Chulhong Kim, Jiayu Huo, Sébastien Ourselin, Rachel Sparks, Albert Clèrigues, Arnau Oliver, Xavier Lladó, Liam F. Chalcroft, Ioannis Pappas, Jeroen Bertels, Ewout Heylen, Juliette Moreau, Nima Hatami, Carole Frindel, Abdul Qayyum, Moona Mazher, Domenec Puig, Shao-Chieh Lin, Chun-Jung Juan, Tianxi Hu, Lyndon Boone, Maged Goubran, Yi-Jui Liu, Susanne Wegener, Florian Kofler, Ivan Ezhov, Suprosanna Shit, Moritz Roman Hernandez Petzsche, Bjoern H. Menze, Jan S. Kirschke, Benedikt Wiestler
2024 conf
ISBI
Guillaume Garret, Antoine Vacavant, Carole Frindel
2024 J jnl
CoRR
Guillaume Garret, Antoine Vacavant, Carole Frindel
2023 conf
ISBI
Nima Hatami, Laura Mechtouff, David Rousseau, Tae-Hee Cho, Omer Faruk Eker, Yves Berthezene, Carole Frindel
2023 J jnl
CoRR
Nima Hatami, Laura Mechtouff, David Rousseau, Tae-Hee Cho, Omer Faruk Eker, Yves Berthezene, Carole Frindel
2023 conf
ISBI
Juliette Moreau, Laura Mechtouff, David Rousseau, Tae-Hee Cho, Omer Faruk Eker, Yves Berthezene, Carole Frindel
2023 J jnl
J. Signal Process. Syst.
Pierre Rougé, Ali Moukadem, Alain Dieterlen, Antoine Boutet, Carole Frindel
2023 J jnl
Medical Image Anal.
Méghane Decroocq, Carole Frindel, Pierre Rougé, Makoto Ohta, Guillaume Lavoué
2023 conf
ISBI
Morgane Des Ligneris, Axel Bonnet, Yohan Chatelain, Tristan Glatard, Michaël Sdika, Gaël Vila, Valentine Wargnier-Dauchelle, Sorina Camarasu-Pop, Carole Frindel
2023 B conf
IEEE Big Data
Antoine Boutet, Carole Frindel, Mohamed Maouche
2022 conf
EMBC
Méghane Decroocq, Guillaume Lavoué, Makoto Ohta, Carole Frindel
2022 conf
EMBC
Nima Hatami, Tae-Hee Cho, Laura Mechtouff, Omer Faruk Eker, David Rousseau, Carole Frindel
2022 J jnl
CoRR
Nima Hatami, Tae-Hee Cho, Laura Mechtouff, Omer Faruk Eker, David Rousseau, Carole Frindel
2022 J jnl
CoRR
Méghane Decroocq, Carole Frindel, Makoto Ohta, Guillaume Lavoué
2021 conf
MLSP
Pierre Rougé, Ali Moukadem, Alain Dieterlen, Antoine Boutet, Carole Frindel
2021 A conf
AsiaCCS
Antoine Boutet, Carole Frindel, Sébastien Gambs, Théo Jourdan, Rosin Claude Ngueveu
2021 J jnl
SoftwareX
Ali Ahmad, Guillaume Vanel, Sorina Camarasu-Pop, Axel Bonnet, Carole Frindel, David Rousseau
2021 conf
MLSP
Théo Jourdan, Antoine Boutet, Carole Frindel
2021 J jnl
CoRR
Théo Jourdan, Antoine Boutet, Carole Frindel
2021 J jnl
ACM Trans. Comput. Heal.
Théo Jourdan, Antoine Boutet, Amine Bahi, Carole Frindel
2021 J jnl
Sensors
Théo Jourdan, Noëlie Debs, Carole Frindel
2021 conf
IWSSIP
Méghane Decroocq, Morgane Des Ligneris, Timothée Jacquesson, Carole Frindel
2020 J jnl
CoRR
Antoine Boutet, Carole Frindel, Sébastien Gambs, Théo Jourdan, Claude Rosin Ngueveu
2020 J jnl
Frontiers Robotics AI
Ali Ahmad, Carole Frindel, David Rousseau
2020 conf
EUSIPCO
Noëlie Debs, Théo Jourdan, Ali Moukadem, Antoine Boutet, Carole Frindel
2020 J jnl
Comput. Biol. Medicine
Noëlie Debs, Pejman Rasti, Léon Victor, Tae-Hee Cho, Carole Frindel, David Rousseau
2020 conf
IPTA
Ali Ahmad, Carole Frindel, David Rousseau
2019 book
Carole Frindel
2019 conf
SASHIMI@MICCAI
Noëlie Debs, Méghane Decroocq, Tae-Hee Cho, David Rousseau, Carole Frindel
2018 J jnl
Comput. Biol. Medicine
Chloé Murtin, Carole Frindel, David Rousseau, Kei Ito
2018 J jnl
Medical Image Anal.
Mathilde Giacalone, Pejman Rasti, Noëlie Debs, Carole Frindel, Tae-Hee Cho, Emmanuel Grenier, David Rousseau
2018 C conf
MobiQuitous
Théo Jourdan, Antoine Boutet, Carole Frindel
2018 J jnl
J. Imaging
Clément Douarre, Richard Schielein, Carole Frindel, Stefan Gerth, David Rousseau
2017 conf
HealthyIoT
Pierre Gard, Lucie Lalanne, Alexandre Ambourg, David Rousseau, François Lesueur, Carole Frindel
2017 J jnl
IEEE Trans. Biomed. Eng.
Marc C. Robini, Matthew Ozon, Carole Frindel, Feng Yang, Yue Min Zhu
2017 conf
HealthyIoT
Carole Frindel, David Rousseau
2017 J jnl
Entropy
Mathilde Giacalone, Carole Frindel, Emmanuel Grenier, David Rousseau
2016 conf
EUSIPCO
Mathilde Giacalone, Carole Frindel, David Rousseau
2016 conf
IWSSIP
Mathilde Giacalone, Carole Frindel, Marc C. Robini, David Rousseau
2015 conf
IWSSIP
Claudio Stamile, Gabriel Kocevar, François Cotton, Salem Hannoun, Françoise Durand-Dubief, Carole Frindel, David Rousseau, Dominique Sappey-Marinier
2014 J jnl
Medical Image Anal.
Carole Frindel, Marc C. Robini, David Rousseau
2013 conf
CinC
Matthew Ozon, Marc C. Robini, Pierre Croisille, Carole Frindel, Yue-Min Zhu
2009 conf
FIMH
Carole Frindel, Marc C. Robini, Joël Schaerer, Pierre Croisille, Yue-Min Zhu
2009 J jnl
Medical Image Anal.
Carole Frindel, Marc C. Robini, Pierre Croisille, Yue-Min Zhu
2009 B conf
ICIP
Carole Frindel, Marc C. Robini, Joël Schaerer, Pierre Croisille, Yue-Min Zhu
2008 conf
ISBI
Carole Frindel, Joël Schaerer, Pierre Gueth, Patrick Clarysse, Yue-Min Zhu, Marc C. Robini
redb/extractors/extractor.py
← Index redb/extractors/extractor.py python
import hashlib
import inspect
from abc import ABCMeta, abstractmethod
from dataclasses import asdict
from functools import cached_property
from datetime import datetime, timezone
import math
from typing import Counter, List, Optional, Dict, Any, Tuple
from redb import settings
from redb.models.dataclasses import Hash
from .database_exporters import DatabaseExporter, ElasticsearchExporter, ClickHouseExporter, PrintExporter

class Extractor(metaclass=ABCMeta):
    def __init__(
        self,
        filepath: str,
        log: Any,
        exporters: Optional[List[DatabaseExporter]] = None,
        index_prefix: Optional[str] = None,
        source: Optional[str] = None,
        elastic_index: Optional[str] = None,
        known_benign: bool = False,
        known_malicious: bool = False,
        precomputed_hashes: Optional[Dict[str, str]] = None,
    ):
        self.log = log
        self.log.debug(f"Creating {self.__class__.__name__}")
        self.filepath = filepath
        self.source = source
        self.exporters = exporters or []
        self.index_prefix = index_prefix if index_prefix else settings.ELASTIC_BINARIES_COLLECTION
        self.elastic_index = self.index_prefix + (elastic_index if elastic_index else "")
        self.known_benign = known_benign
        self.known_malicious = known_malicious

        # Use precomputed hashes if provided (e.g., from machofile, pefile)
        # Otherwise compute them from binary
        if precomputed_hashes:
            self.md5 = precomputed_hashes.get('md5') or precomputed_hashes.get('MD5')
            self.sha1 = precomputed_hashes.get('sha1') or precomputed_hashes.get('SHA1')
            self.sha256 = precomputed_hashes.get('sha256') or precomputed_hashes.get('SHA256')
        else:
            self.md5 = hashlib.md5(self.binary).hexdigest()
            self.sha1 = hashlib.sha1(self.binary).hexdigest()
            self.sha256 = hashlib.sha256(self.binary).hexdigest()
        self.hash = Hash(self.md5, self.sha1, self.sha256)

    @cached_property
    def binary(self):
        with open(self.filepath, "rb") as f:
            data = f.read()
        return data

    @property
    @abstractmethod
    def tag(self):
        pass

    @abstractmethod
    def extract(self):
        """
        this method defines the extracted data
        """

    @staticmethod
    def process_binary_string(s):
        # Remove \x00 padding
        s = s.rstrip(b"\x00")

        # Check if there are any non-printable characters
        has_non_printable = any(byte < 32 or byte > 126 for byte in s)

        if not has_non_printable:
            # If all characters are printable, decode the string
            return s.decode()
        else:
            # If there are non-printable characters, represent them as \xDD
            return "".join(
                [
                    f"\\x{byte:02x}" if byte < 32 or byte > 126 else chr(byte)
                    for byte in s
                ]
            )

    @staticmethod
    def remove_non_utf8(binary_string):
        decoded = b""
        for i in range(len(binary_string)):
            try:
                # Try to decode each byte
                char = binary_string[i : i + 1].decode("utf-8")
                decoded += char.encode("utf-8")
            except UnicodeDecodeError:
                # Skip this byte if it can't be decoded
                continue
        return decoded

    def calculate_entropy(self, data):
        """Calculate the entropy of a chunk of data.
        Based on pefile.SectionStructure.entropy_H.
        """
        # self.log.debug(inspect.currentframe().f_code.co_name)
        if not data:
            return 0.0

        if type(data) == str:
            counts = Counter(data)
            frequencies = ((i / len(data)) for i in counts.values())
            return - sum(f * math.log(f, 2) for f in frequencies)
        else:
            occurences = Counter(bytearray(data))
            entropy = 0
            for x in occurences.values():
                p_x = float(x) / len(data)
                entropy -= p_x * math.log(p_x, 2)
            return entropy

    @abstractmethod
    def prepare_export_data(self, exporter_type: str) -> Tuple[List[Any], List[str], List[str]]:
        """
        Prepare data for specific export type
        Returns:
            Tuple containing:
            - data: List of values to insert
            - column_names: List of column names
            - column_type_names: List of column types
        """
        pass

    def export_data(self):
        """Export data to all configured exporters

        Returns:
            True: Export succeeded
            False: Export failed (actual error)
            None: No data to export (not an error, e.g., no overlay, no signature)
        """
        self.log.debug(inspect.currentframe().f_code.co_name)
        success = True
        extracted_data = self.extract()

        if extracted_data is None:
            self.log.debug("extract() returned None, skipping export")
            return None  # No data to export, not a failure
            
        for exporter in self.exporters:
            if isinstance(exporter, PrintExporter):
                # For PrintExporter, we pass the extracted data directly
                success &= exporter.export(extracted_data)
            else:
                # Get the data prepared for this specific exporter type
                export_data = self.prepare_export_data(exporter.__class__.__name__)
                
                if export_data is None:
                    self.log.debug(f"prepare_export_data returned None for {exporter.__class__.__name__}")
                    return False
                
                if isinstance(exporter, ElasticsearchExporter):
                    success &= exporter.export(
                        export_data,
                        index=self.elastic_index,
                        tag=self.tag(),
                        hashes=asdict(self.hash),
                        known_benign=self.known_benign,
                        known_malicious=self.known_malicious
                    )
                elif isinstance(exporter, ClickHouseExporter):
                    # For ClickHouse, we need to pass the table name and the prepared data
                    success &= exporter.export(
                        export_data,
                        table=self.get_clickhouse_table(),
                        # Add these parameters explicitly
                        column_names=export_data[1] if isinstance(export_data, tuple) else None,
                        column_type_names=export_data[2] if isinstance(export_data, tuple) else None
                    )
                
        return success

    @abstractmethod
    def get_clickhouse_table(self) -> str:
        """Return the appropriate ClickHouse table name"""
        pass
    # def export_to_elastic(self, list_of_dataclasses, tag=None):
    #     self.log.debug(inspect.currentframe().f_code.co_name)

    #     if not isinstance(list_of_dataclasses, list):
    #         self.log.error("Called export_to_elastic wrongly")

    #     now_t = datetime.now(timezone.utc).strftime("%Y-%m-%d %H:%M:%S")
    #     for dataclass_ in list_of_dataclasses:
    #         if not settings.ELASTIC_CLIENT.ping():
    #             self.log.error("[CONNECTION ERROR] ping to elastic failed")
            
    #         # Convert dataclass to dict and filter out None values
    #         document = {k: v for k, v in asdict(dataclass_).items() if v is not None}
            
    #         if tag:
    #             document["tag"] = [tag, self.tag()]
    #         else:
    #             document["tag"] = self.tag()
    #         hashes = asdict(self.hash)
    #         document |= hashes
    #         document["timestamp_utc"] = now_t
    #         # document["source"] = self.source
    #         document["known_benign"] = self.known_benign
    #         document["known_malicious"] = self.known_malicious

    #         if "_id" in document:
    #             tmp_id = document.pop("_id") + document["sha256"]
    #             _id = hashlib.sha256(tmp_id.encode()).hexdigest()
    #         else:
    #             _id = document["sha256"]

    #         # self.log.debug(f"[DEBUG] about to export {type(document)} {document}")
    #         try:
    #             doc_dump = json.dumps(document)
    #         except TypeError as e:
    #             self.log.error(
    #                 f"Failed export of document. " f"full document: {document}"
    #             )
    #             raise e

    #         # body={"doc": doc_dump,
    #         #       "doc_as_upsert": True  # Create the document if it doesn't exist
    #         # }

    #         # Check if the index exists, and create it if it doesn't
    #         # if not settings.ELASTIC_CLIENT.indices.exists(index=self.elastic_index):
    #         #     settings.ELASTIC_CLIENT.indices.create(index=self.elastic_index)
    #         # pprint(doc_dump) #DEBUG
    #         # print("[DEBUG] _id: " + _id)
    #         # print("[DEBUG] index: " + self.elastic_index)
    #         settings.ELASTIC_CLIENT.index(
    #             index=self.elastic_index, id=_id, document=doc_dump
    #         )