Carol Lushbough

20 papers C 2Journal 9Unranked 9
YearRankTypeTitle / Venue / Authors
2024 J jnl
Briefings Bioinform.
Etienne Z. Gnimpieba, Timothy W. Hartman, Tuyen Do, Jessica Zylla, Shiva Aryal, Samuel J. Haas, Diing D. M. Agany, Bichar Dip Shrestha Gurung, Valena Doe, Zelaikha B. Yosufzai, Daniel Pan, Ross Campbell, Victor C. Huber, Rajesh Kumar Sani, Venkataramana Gadhamshetty, Carol Lushbough
2024 J jnl
CoRR
Sandeep Chataut, Tuyen Do, Bichar Dip Shrestha Gurung, Shiva Aryal, Anup Khanal, Carol Lushbough, Etienne Z. Gnimpieba
2023 conf
BIBM
Bichar Dip Shrestha Gurung, Anup Khanal, Timothy W. Hartman, Tuyen Do, Sandeep Chataut, Carol Lushbough, Venkataramana Gadhamshetty, Etienne Z. Gnimpieba
2023 conf
BIBM
Tuyen Do, Bichar Dip Shrestha Gurung, Shiva Aryal, Anup Khanal, Sandeep Chataut, Venkataramana Gadhamshetty, Carol Lushbough, Etienne Z. Gnimpieba
2022 conf
BIBM
Alain Bertrand Bomgni, Ernest Basile Fotseu Fotseu, Daril Raoul Kengne Wambo, Rajesh Kumar Sani, Carol Lushbough, Etienne Z. Gnimpieba
2021 conf
BIBM
Thierry Kongne Nembot, Ernest Basile Fotseu Fotseu, Rajesh Kumar Sani, Etienne Z. Gnimpieba, Carol Lushbough, Alain Bertrand Bomgni
2021 J jnl
PLoS Comput. Biol.
Faryad Sahneh, Meghan A. Balk, Marina Kisley, Chi-Kwan Chan, Mercury Fox, Brian Nord, Eric Lyons, Tyson Lee Swetnam, Daniela Huppenkothen, Will Sutherland, Ramona L. Walls, Daven P. Quinn, Tonantzin Tarin, David S. LeBauer, David Ribes, Dunbar P. Birnie III, Carol Lushbough, Eric Carr, Grey Nearing, Jeremy Fischer, Kevin Tyle, Luis Carrasco, Meagan Lang, Peter W. Rose, Richard R. Rushforth, Samapriya Roy, Thomas Matheson, Tina Lee, C. Titus Brown, Tracy K. Teal, Monica Papes, Stephen G. Kobourov, Nirav C. Merchant
2015 J jnl
Concurr. Comput. Pract. Exp.
Liya Wang, Doreen Ware, Carol Lushbough, Nirav C. Merchant, Lincoln Stein
2014 conf
BCB
Nick Weinandt, Laura M. Jackson, Etienne Z. Gnimpieba, Carol Lushbough
2013 C conf
CLUSTER
Carol Lushbough, Etienne Z. Gnimpieba, Rion Dooley
2013 J jnl
CoRR
Etienne Z. Gnimpieba, Douglas M. Jennewein, Luke Fuhrman, Carol Lushbough
2013 C conf
CLUSTER
Liya Wang, Doreen Ware, Nirav C. Merchant, Carol Lushbough
2011 J jnl
Nucleic Acids Res.
Carol Lushbough, Douglas M. Jennewein, Volker Brendel
2010 J jnl
IEEE ACM Trans. Comput. Biol. Bioinform.
Carol Lushbough, Michael K. Bergman, Carolyn J. Lawrence, Douglas M. Jennewein, Volker Brendel
2008 conf
BIOCOMP
Carol Lushbough, Volker Brendel
2008 J jnl
Int. J. Comput. Biol. Drug Des.
Carol Lushbough, Michael K. Bergman, Carolyn J. Lawrence, Douglas M. Jennewein, Volker Brendel
2008 J jnl
Nucleic Acids Res.
Jon Duvick, Ann Fu, Usha Muppirala, Mukul Sabharwal, Matthew D. Wilkerson, Carolyn J. Lawrence, Carol Lushbough, Volker Brendel
2008 conf
BIOCOMP
Carol Lushbough, Jon Duvick, Qunfeng Dong, Douglas M. Jennewein, Joe Reynoldson, Volker Brendel
2007 conf
BIOCOMP
Carol Lushbough, Michael K. Bergman, Carolyn J. Lawrence, Douglas M. Jennewein, Volker Brendel
2006 conf
FECS
Carol Lushbough
pyproject.toml
← Index pyproject.toml ini
[tool.black]
line-length = 120
target-version = ['py38']
include = '\.pyi?$'
extend-exclude = '''
/(
  # directories
  \.eggs
  | \.git
  | \.hg
  | \.mypy_cache
  | \.tox
  | \.venv
  | build
  | dist
  | venv
)/
'''

[tool.isort]
profile = "black"
line_length = 120
multi_line_output = 3
include_trailing_comma = true
force_grid_wrap = 0
use_parentheses = true
ensure_newline_before_comments = true

[tool.flake8]
max-line-length = 120
ignore = ["E501", "W503", "E203", "F401"]
exclude = [
    "__pycache__",
    ".git",
    "venv",
    "build",
    "dist",
    "*.egg-info",
]

[tool.pylint.messages_control]
disable = [
    "C0114",  # missing-module-docstring
    "C0115",  # missing-class-docstring
    "C0116",  # missing-function-docstring
    "C0103",  # invalid-name
    "R0903",  # too-few-public-methods
    "R0913",  # too-many-arguments
    "R0914",  # too-many-locals
    "R0915",  # too-many-statements
]

[tool.pylint.format]
max-line-length = 120

# ============================================================================
# Pytest Configuration
# ============================================================================
[tool.pytest.ini_options]
testpaths = ["tests/unit", "tests/integration"]
python_files = ["test_*.py"]
python_classes = ["Test*"]
python_functions = ["test_*"]

# Default options: verbose, show locals on failure, strict markers
addopts = [
    "-v",
    "--strict-markers",
    "--tb=short",
]

# Custom markers for selective test execution
markers = [
    "unit: Pure unit tests - no external deps, no disk I/O, fast (< 1s each)",
    "integration: Integration tests - use real test binaries on disk",
    "slow: Tests that take > 5s (e.g. entropy on large files, full extraction pipelines)",
    "pe: Tests specific to PE binary analysis",
    "elf: Tests specific to ELF binary analysis",
    "macho: Tests specific to Mach-O binary analysis",
    "apk: Tests specific to APK binary analysis",
    "exporters: Tests for database exporters (ClickHouse, Elasticsearch, Print)",
    "dataclass: Tests for dataclass construction and field validation",
    "binja: Tests for Binary Ninja decompiler extractors (mocked, no license needed)",
]