Carol Lushbough

20 papers C 2Journal 9Unranked 9
YearRankTypeTitle / Venue / Authors
2024 J jnl
Biofilm marker discovery with cloud-based dockerized metagenomics analysis of microbial communities.
Briefings Bioinform.
Etienne Z. Gnimpieba, Timothy W. Hartman, Tuyen Do, Jessica Zylla, Shiva Aryal, Samuel J. Haas, Diing D. M. Agany, Bichar Dip Shrestha Gurung, Valena Doe, Zelaikha B. Yosufzai, Daniel Pan, Ross Campbell, Victor C. Huber, Rajesh Kumar Sani, Venkataramana Gadhamshetty, Carol Lushbough
2024 J jnl
Comparative Study of Domain Driven Terms Extraction Using Large Language Models.
CoRR
Sandeep Chataut, Tuyen Do, Bichar Dip Shrestha Gurung, Shiva Aryal, Anup Khanal, Carol Lushbough, Etienne Z. Gnimpieba
2023 — conf
Transformer in Microbial Image Analysis: A Comparative Exploration of TransUNet, UNet, and DoubleUNet for SEM Image Segmentation.
BIBM
Bichar Dip Shrestha Gurung, Anup Khanal, Timothy W. Hartman, Tuyen Do, Sandeep Chataut, Carol Lushbough, Venkataramana Gadhamshetty, Etienne Z. Gnimpieba
2023 — conf
Utilizing XGBoost for the Prediction of Material Corrosion Rates from Embedded Tabular Data using Large Language Model.
BIBM
Tuyen Do, Bichar Dip Shrestha Gurung, Shiva Aryal, Anup Khanal, Sandeep Chataut, Venkataramana Gadhamshetty, Carol Lushbough, Etienne Z. Gnimpieba
2022 — conf
Attention model-based and multi-organism driven gene recognition from text: application to a microbial biofilm organism set.
BIBM
Alain Bertrand Bomgni, Ernest Basile Fotseu Fotseu, Daril Raoul Kengne Wambo, Rajesh Kumar Sani, Carol Lushbough, Etienne Z. Gnimpieba
2021 — conf
Prediction of essential genes in G20 using machine learning model.
BIBM
Thierry Kongne Nembot, Ernest Basile Fotseu Fotseu, Rajesh Kumar Sani, Etienne Z. Gnimpieba, Carol Lushbough, Alain Bertrand Bomgni
2021 J jnl
Ten simple rules to cultivate transdisciplinary collaboration in data science.
PLoS Comput. Biol.
Faryad Sahneh, Meghan A. Balk, Marina Kisley, Chi-Kwan Chan, Mercury Fox, Brian Nord, Eric Lyons, Tyson Lee Swetnam, Daniela Huppenkothen, Will Sutherland, Ramona L. Walls, Daven P. Quinn, Tonantzin Tarin, David S. LeBauer, David Ribes, Dunbar P. Birnie III, Carol Lushbough, Eric Carr, Grey Nearing, Jeremy Fischer, Kevin Tyle, Luis Carrasco, Meagan Lang, Peter W. Rose, Richard R. Rushforth, Samapriya Roy, Thomas Matheson, Tina Lee, C. Titus Brown, Tracy K. Teal, Monica Papes, Stephen G. Kobourov, Nirav C. Merchant
2015 J jnl
A genome-wide association study platform built on iPlant cyber-infrastructure.
Concurr. Comput. Pract. Exp.
Liya Wang, Doreen Ware, Carol Lushbough, Nirav C. Merchant, Lincoln Stein
2014 — conf
Pheno2GRN: a workflow for phenotype to gene network study and reverse engineering comparison.
BCB
Nick Weinandt, Laura M. Jackson, Etienne Z. Gnimpieba, Carol Lushbough
2013 C conf
BioExtract Server, a Web-based workflow enabling system, leveraging iPlant collaborative resources.
CLUSTER
Carol Lushbough, Etienne Z. Gnimpieba, Rion Dooley
2013 J jnl
Bioinformatics Knowledge Transmission (training, learning, and teaching): overview and flexible comparison of computer based training approaches.
CoRR
Etienne Z. Gnimpieba, Douglas M. Jennewein, Luke Fuhrman, Carol Lushbough
2013 C conf
Building an open Genome Wide Association Study (GWAS) platform.
CLUSTER
Liya Wang, Doreen Ware, Nirav C. Merchant, Carol Lushbough
2011 J jnl
The BioExtract Server: a web-based bioinformatic workflow platform.
Nucleic Acids Res.
Carol Lushbough, Douglas M. Jennewein, Volker Brendel
2010 J jnl
BioExtract Server - An Integrated Workflow-Enabling System to Access and Analyze Heterogeneous, Distributed Biomolecular Data.
IEEE ACM Trans. Comput. Biol. Bioinform.
Carol Lushbough, Michael K. Bergman, Carolyn J. Lawrence, Douglas M. Jennewein, Volker Brendel
2008 — conf
An Overview of the BioExtract Server - a Distributed, Web Based Application for Bioinformatic Analysis.
BIOCOMP
Carol Lushbough, Volker Brendel
2008 J jnl
Implementing bioinformatic workflows within the BioExtract Server.
Int. J. Comput. Biol. Drug Des.
Carol Lushbough, Michael K. Bergman, Carolyn J. Lawrence, Douglas M. Jennewein, Volker Brendel
2008 J jnl
PlantGDB: a resource for comparative plant genomics.
Nucleic Acids Res.
Jon Duvick, Ann Fu, Usha Muppirala, Mukul Sabharwal, Matthew D. Wilkerson, Carolyn J. Lawrence, Carol Lushbough, Volker Brendel
2008 — conf
TableMaker: An ad hoc Query Tool for Relational Databases.
BIOCOMP
Carol Lushbough, Jon Duvick, Qunfeng Dong, Douglas M. Jennewein, Joe Reynoldson, Volker Brendel
2007 — conf
Creating Bioinformatic Workflows within the BioExtract Server.
BIOCOMP
Carol Lushbough, Michael K. Bergman, Carolyn J. Lawrence, Douglas M. Jennewein, Volker Brendel
2006 — conf
Providing Application Services for Small Businesses.
FECS
Carol Lushbough