Carol A. Fulcher

14 papers Journal 14
YearRankTypeTitle / Venue / Authors
2021 J jnl
Briefings Bioinform.
Peter D. Karp, Peter E. Midford, Richard Billington, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Wai Kit Ong, Pallavi Subhraveti, Ron Caspi, Carol A. Fulcher, Ingrid M. Keseler, Suzanne M. Paley
2019 J jnl
Briefings Bioinform.
Peter D. Karp, Richard Billington, Ron Caspi, Carol A. Fulcher, Mario Latendresse, Anamika Kothari, Ingrid M. Keseler, Markus Krummenacker, Peter E. Midford, Quang Ong, Wai Kit Ong, Suzanne M. Paley, Pallavi Subhraveti
2018 J jnl
Nucleic Acids Res.
Ron Caspi, Richard Billington, Carol A. Fulcher, Ingrid M. Keseler, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Peter E. Midford, Quang Ong, Wai Kit Ong, Suzanne M. Paley, Pallavi Subhraveti, Peter D. Karp
2017 J jnl
Nucleic Acids Res.
Ingrid M. Keseler, Amanda Mackie, Alberto Santos-Zavaleta, Richard Billington, César Bonavides-Martínez, Ron Caspi, Carol A. Fulcher, Socorro Gama-Castro, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Luis Muñiz-Rascado, Quang Ong, Suzanne M. Paley, Martín Peralta-Gil, Pallavi Subhraveti, David A. Velázquez-Ramírez, Daniel S. Weaver, Julio Collado-Vides, Ian T. Paulsen, Peter D. Karp
2016 J jnl
Briefings Bioinform.
Peter D. Karp, Mario Latendresse, Suzanne M. Paley, Markus Krummenacker, Quang Ong, Richard Billington, Anamika Kothari, Daniel S. Weaver, Thomas J. Lee, Pallavi Subhraveti, Aaron Spaulding, Carol A. Fulcher, Ingrid M. Keseler, Ron Caspi
2016 J jnl
Nucleic Acids Res.
Ron Caspi, Richard Billington, Luciana Ferrer, Hartmut Foerster, Carol A. Fulcher, Ingrid M. Keseler, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Lukas A. Mueller, Quang Ong, Suzanne M. Paley, Pallavi Subhraveti, Daniel S. Weaver, Peter D. Karp
2014 J jnl
Database J. Biol. Databases Curation
Ingrid M. Keseler, Marek S. Skrzypek, Deepika Weerasinghe, Albert Y. Chen, Carol A. Fulcher, Gene-Wei Li, Kimberly C. Lemmer, Katherine M. Mladinich, Edmond D. Chow, Gavin Sherlock, Peter D. Karp
2014 J jnl
Nucleic Acids Res.
Ron Caspi, Tomer Altman, Richard Billington, Kate Dreher, Hartmut Foerster, Carol A. Fulcher, Timothy A. Holland, Ingrid M. Keseler, Anamika Kothari, Aya Kubo, Markus Krummenacker, Mario Latendresse, Lukas A. Mueller, Quang Ong, Suzanne M. Paley, Pallavi Subhraveti, Daniel S. Weaver, Deepika Weerasinghe, Peifen Zhang, Peter D. Karp
2013 J jnl
Nucleic Acids Res.
Ingrid M. Keseler, Amanda Mackie, Martín Peralta-Gil, Alberto Santos-Zavaleta, Socorro Gama-Castro, César Bonavides-Martínez, Carol A. Fulcher, Araceli M. Huerta, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Luis Muñiz-Rascado, Quang Ong, Suzanne M. Paley, Imke Schröder, Alexander Glennon Shearer, Pallavi Subhraveti, Michael Travers, Deepika Weerasinghe, Verena Weiss, Julio Collado-Vides, Robert P. Gunsalus, Ian T. Paulsen, Peter D. Karp
2012 J jnl
Nucleic Acids Res.
Ron Caspi, Tomer Altman, Kate Dreher, Carol A. Fulcher, Pallavi Subhraveti, Ingrid M. Keseler, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Lukas A. Mueller, Quang Ong, Suzanne M. Paley, Anuradha Pujar, Alexander Glennon Shearer, Michael Travers, Deepika Weerasinghe, Peifen Zhang, Peter D. Karp
2011 J jnl
Nucleic Acids Res.
Ingrid M. Keseler, Julio Collado-Vides, Alberto Santos-Zavaleta, Martín Peralta-Gil, Socorro Gama-Castro, Luis Muñiz-Rascado, César Bonavides-Martínez, Suzanne M. Paley, Markus Krummenacker, Tomer Altman, Pallavi Kaipa, Aaron Spaulding, John Pacheco, Mario Latendresse, Carol A. Fulcher, Malabika Sarker, Alexander Glennon Shearer, Amanda Mackie, Ian T. Paulsen, Robert P. Gunsalus, Peter D. Karp
2010 J jnl
Nucleic Acids Res.
Ron Caspi, Tomer Altman, Joseph M. Dale, Kate Dreher, Carol A. Fulcher, Fred Gilham, Pallavi Kaipa, Athikkattuvalasu S. Karthikeyan, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Lukas A. Mueller, Suzanne M. Paley, Liviu Popescu, Anuradha Pujar, Alexander Glennon Shearer, Peifen Zhang, Peter D. Karp
2008 J jnl
Nucleic Acids Res.
Ron Caspi, Hartmut Foerster, Carol A. Fulcher, Pallavi Kaipa, Markus Krummenacker, Mario Latendresse, Suzanne M. Paley, Seung Yon Rhee, Alexander Glennon Shearer, Christophe Tissier, Thomas C. Walk, Peifen Zhang, Peter D. Karp
2006 J jnl
Nucleic Acids Res.
Ron Caspi, Hartmut Foerster, Carol A. Fulcher, Rebecca Hopkinson, John Ingraham, Pallavi Kaipa, Markus Krummenacker, Suzanne M. Paley, John Pick, Seung Yon Rhee, Christophe Tissier, Peifen Zhang, Peter D. Karp
docs/new_database_schema.md
← Index docs/new_database_schema.md markdown

## LLIL function

| Field Name | Field Type | Description |
|-------------|-------------|-------------|
| function_type | string | The inferred type of the analyzed function, determined by the FunctionTypeAnalysis module (e.g., standard, library, thunk). |
| sha256_llil | string | SHA-256 hash computed from the Low-Level Intermediate Language (LLIL) instructions of the function. |
| ssdeep_llil | string | Fuzzy hash (ssdeep) of the LLIL instruction sequence, used for similarity detection. |
| tlsh_llil | string | TLSH (Trend Locality Sensitive Hash) value of the LLIL instructions, used for approximate matching and similarity comparison. |
| instructions_types_llil | list[string] | List of unique LLIL instruction types (e.g., arithmetic, control flow, memory operations). |
| control_flow_count_llil | integer | Number of control flow instructions in the LLIL representation (e.g., branches, jumps, calls). |
| memory_access_pattern_llil | dict | Patterns of memory access operations detected in the LLIL code (e.g., loads, stores, stack operations). |
| register_usage | dict | Summary of register usage, indicating which registers are read and written in the function. |
| total_reg_reads | integer | Total number of register read operations in the LLIL code. |
| total_reg_written | integer | Total number of register write operations in the LLIL code. |
| data_references_count | integer | Number of data references in the LLIL code (e.g., constants, global variables). |
| max_block_size | integer | Size of the largest basic block in the LLIL representation, measured in number of instructions. |
| num_calls | integer | Total number of function call instructions present in the LLIL code. |
| stack_size | integer | Estimated stack size used by the function, inferred from LLIL analysis. |


## CFG level

| Field Name          | Field Type    | Description                                                                                                                               |
|---------------------|---------------|-------------------------------------------------------------------------------------------------------------------------------------------|
| block_id            | integer       | Unique identifier for the basic block within the function (block_instructions + str(block.start) + str(block.end) + str(function.start)). |
| function_address    | integer       | Starting memory address of the parent function containing this block.                                                                     |
| block_start_address | integer       | Starting address of the basic block in memory.                                                                                            |
| block_end_address   | integer       | Ending address of the basic block in memory.                                                                                              |
| block_size          | integer       | Size of the basic block in bytes (computed as end - start).                                                                               |
| instructions_count  | integer       | Number of instructions contained in the basic block.                                                                                      |
| block_instructions  | string        | MD5 hash of the block's instruction sequence, used for integrity or similarity checks.                                                    |
| predecessor_blocks  | list[u64]     | List of addresses or IDs of predecessor blocks in the control flow graph (CFG).                                                           |
| successor_blocks    | list[u64]     | List of addresses or IDs of successor blocks in the CFG.                                                                                  |
| depth               | integer       | Depth level of the block in the control flow graph, starting from the entry block.                                                        |
| position            | integer       | Sequential position or index of the block within the function’s block map.                                                                |
| branch_type         | string        | Type of branch ending the block (e.g., conditional, unconditional, call, return).                                                         |
| block_type          | string        | Classification of the block (e.g., entry, exit, loop header, regular).                                                                    |
| flags               | dict          | Metadata or attributes extracted from the block (e.g., specific behavior or conditions).                                                  |
| dominators          | list[integer] | List of block addresses or IDs that dominate this block in the control flow graph.                                                        |
| post_dominators     | list[integer] | List of block addresses or IDs that post-dominate this block in the control flow graph.                                                   |
 | measures            | list[tuples]  | List of measures to be defined                                                                                                            |

## Disassembly

| Field Name | Field Type | Description |
|-------------|-------------|-------------|
| disassembled_function_hash | string | SHA-256 hash of the disassembled function string, used as a unique identifier. |
| disassembled_function | string | The disassembled function including instruction addresses. |
| disassembled_function_no_addresses | string | The disassembled function without instruction addresses, containing only the instruction mnemonics and operands. |
| disassembled_function_name | string | The name of the analyzed function. |
| disassembled_function_address | integer | The starting memory address of the disassembled function. |
| instructions_count | integer | Total number of instructions within the disassembled function. |
| function_type | string | The inferred type of the function as determined by the FunctionTypeAnalysis module (e.g., standard, library, thunk). |
| instructions_types | list[string] | List of unique instruction types (e.g., arithmetic, logic, control flow, memory). |
| control_flow_count | integer | Number of control flow instructions (e.g., jumps, calls, returns). |
| memory_access_pattern | dict | Patterns of memory access operations detected in the function (e.g., loads, stores, stack operations). |
| register_usage | dict | Summary of register usage, showing which registers are read from or written to. |
| data_references_count | integer | Count of data references made by the function (e.g., global variables or constants). |
| max_block_size | integer | The size of the largest basic block (in number of instructions). |
| num_calls | integer | Total number of function call instructions. |
| stack_size | integer | Estimated stack size used by the function. |

## Decompilation

| Field Name | Field Type | Description |
|-------------|-------------|-------------|
| decompiled_function_hash | string | SHA-256 hash of the decompiled function code, used as a unique identifier. |
| decompiled_function | string | The decompiled function source code in high-level representation. |
| decompiled_function_name | string | The name of the decompiled function. |
| decompiled_function_prototype | string | The function prototype, including return type, name, and parameters. |
| decompiled_function_address | integer | The starting memory address of the decompiled function. |
| function_type | string | The inferred function type from the FunctionTypeAnalysis module (e.g., standard, library, thunk). |
| functions_caller | list[string] | List of functions that call this function (incoming call references). |
| functions_call | list[string] | List of functions called by this function (outgoing call references). |
| flattened_score | float | Score representing the degree of control-flow flattening detected in the function. |
| mba_score | float | Score representing the presence or intensity of mixed boolean arithmetic (MBA) obfuscation patterns. |