Carlos Oscar Sánchez Sorzano

49 papers B 3Journal 36Unranked 10
YearRankTypeTitle / Venue / Authors
2024 — conf
Fast Global Image Alignment Algorithm for CryoEM through Vector Compression.
ISBI
Oier Lauzirika Zarrabeitia, E. Ramírez-Aportela, José María Carazo, Carlos Oscar Sánchez Sorzano
2022 J jnl
PDBe-KB: collaboratively defining the biological context of structural data.
Nucleic Acids Res.
Mihaly Varadi, Stephen Anyango, David R. Armstrong, John M. Berrisford, Preeti Choudhary, Mandar S. Deshpande, Nurul Nadzirin, Sreenath Nair, Lukás Pravda, Ahsan Tanweer, Bissan Al-Lazikani, Claudia Andreini, Geoffrey J. Barton, David Bednar, Karel Berka, Tom L. Blundell, Kelly Brock, José María Carazo, Jirí Damborský, Alessia David, Sucharita Dey, Roland L. Dunbrack Jr., Juan Fernández-Recio, Franca Fraternali, Toby J. Gibson, Manuela Helmer-Citterich, David Hoksza, Thomas A. Hopf, David Jakubec, Natarajan Kannan, Radoslav Krivák, Manjeet Kumar, Emmanuel D. Levy, Nir London, José Ramón Macías, Mallur Srivatsan Madhusudhan, Debora S. Marks, Lennart Martens, Stuart A McGowan, Jake E. McGreig, Vivek Modi, R. Gonzalo Parra, Gerardo Pepe, Damiano Piovesan, Jaime Prilusky, Valeria Putignano, Leandro G. Radusky, Pathmanaban Ramasamy, Atilio O. Rausch, Nathalie Reuter, Luis A. Rodriguez, Nathan J. Rollins, Antonio Rosato, Pawel Rubach, Luis Serrano, Gulzar Singh, Petr Skoda, Carlos Oscar Sánchez Sorzano, Jan Stourac, Joanna I. Sulkowska, Radka Svobodová Vareková, Natalia Tichshenko, Silvio C. E. Tosatto, Wim F. Vranken, Mark N. Wass, Dandan Xue, Daniel Zaidman, Janet M. Thornton, Michael J. E. Sternberg, Christine A. Orengo, Sameer Velankar
2021 J jnl
3DBionotes COVID-19 edition.
Bioinform.
José Ramón Macías, Rubén Sánchez García, Pablo Conesa, Erney Ramírez-Aportela, Marta Martínez, Carlos Wert-Carvajal, Alberto M. Parra-Perez, Joan Segura Mora, Sam Horrell, Andrea Thorn, Carlos Oscar Sánchez Sorzano, José María Carazo
2020 J jnl
Automatic local resolution-based sharpening of cryo-EM maps.
Bioinform.
Erney Ramírez-Aportela, Jose Luis Vilas, Alisa Glukhova, Roberto Melero, Pablo Conesa, Marta Martínez, David Maluenda, Javier Mota, Amaya Jiménez, Javier Vargas, Roberto Marabini, Patrick M. Sexton, José María Carazo, Carlos Oscar Sánchez Sorzano
2020 J jnl
Integration of Cryo-EM Model Building Software in Scipion.
J. Chem. Inf. Model.
Marta Martínez, A. Jiménez-Moreno, David Maluenda, Erney Ramírez-Aportela, Roberto Melero, Ana Cuervo, Pablo Conesa, Laura del Cano, Y. C. Fonseca, Rubén Sánchez García, David Strelák, J. J. Conesa, E. Fernández-Giménez, F. de Isidro, Carlos Oscar Sánchez Sorzano, José María Carazo, Roberto Marabini
2019 J jnl
3DBIONOTES v3.0: crossing molecular and structural biology data with genomic variations.
Bioinform.
Joan Segura, Rubén Sánchez García, Carlos Oscar Sánchez Sorzano, José María Carazo
2019 J jnl
A GPU acceleration of 3-D Fourier reconstruction in cryo-EM.
Int. J. High Perform. Comput. Appl.
David Strelák, Carlos Oscar Sánchez Sorzano, José María Carazo, Jiri Filipovic
2019 J jnl
BIPSPI: a method for the prediction of partner-specific protein-protein interfaces.
Bioinform.
Rubén Sánchez García, Carlos Oscar Sánchez Sorzano, José María Carazo, Joan Segura
2019 J jnl
Validation of electron microscopy initial models via small angle X-ray scattering curves.
Bioinform.
Amaya Jiménez, Slavica Jonic, Tomás Majtner, Joaquín Otón, Jose Luis Vilas, David Maluenda, Javier Mota, Erney Ramírez-Aportela, Marta Martínez, Yaiza Rancel, Joan Segura, Rubén Sánchez García, Roberto Melero, Laura del Cano, Pablo Conesa, Lars Skjaerven, Roberto Marabini, José María Carazo, Carlos Oscar Sánchez Sorzano
2018 J jnl
Reconstruction From Multiple Particles for 3D Isotropic Resolution in Fluorescence Microscopy.
IEEE Trans. Medical Imaging
Denis Fortun, Paul Guichard, Virginie Hamel, Carlos Oscar Sánchez Sorzano, Niccolo Banterle, Pierre Gonczy, Michael Unser
2017 J jnl
3DBIONOTES v2.0: a web server for the automatic annotation of macromolecular structures.
Bioinform.
Joan Segura, Rubén Sánchez García, Marta Martínez, Jesús Cuenca Alba, Daniel Tabas-Madrid, Carlos Oscar Sánchez Sorzano, José María Carazo
2017 J jnl
Challenges ahead Electron Microscopy for Structural Biology from the Image Processing point of view.
CoRR
Carlos Oscar Sánchez Sorzano, José María Carazo
2016 J jnl
A Guided Tour of Selected Image Processing and Analysis Methods for Fluorescence and Electron Microscopy.
IEEE J. Sel. Top. Signal Process.
Charles Kervrann, Carlos Oscar Sánchez Sorzano, Scott T. Acton, Jean-Christophe Olivo-Marin, Michael Unser
2016 J jnl
Coarse-Graining of Volumes for Modeling of Structure and Dynamics in Electron Microscopy: Algorithm to Automatically Control Accuracy of Approximation.
IEEE J. Sel. Top. Signal Process.
Slavica Jonic, Carlos Oscar Sánchez Sorzano
2016 J jnl
Introduction to the Issue on Advanced Signal Processing in Microscopy and Cell Imaging.
IEEE J. Sel. Top. Signal Process.
Charles Kervrann, Scott T. Acton, Jean-Christophe Olivo-Marin, Carlos Oscar Sánchez Sorzano, Michael Unser
2016 J jnl
System models for PET statistical iterative reconstruction: A review.
Comput. Medical Imaging Graph.
Ana Iriarte, Roberto Marabini, Samuel Matej, Carlos Oscar Sánchez Sorzano, Robert M. Lewitt
2015 — conf
Iterative reconstruction for pet scanners with continuous scintillators.
EMBC
Ana Iriarte, Gabriel Caffarena, Mariano Lopez-Fernandez, Rodrigo García-Carmona, Abraham Otero, Carlos Oscar Sánchez Sorzano, Roberto Marabini
2015 J jnl
NFFinder: an online bioinformatics tool for searching similar transcriptomics experiments in the context of drug repositioning.
Nucleic Acids Res.
Javier Setoain, Mònica Franch, Marta Martínez, Daniel Tabas-Madrid, Carlos Oscar Sánchez Sorzano, Annette Bakker, Eduardo Gonzalez-Couto, Juan Elvira, Alberto D. Pascual-Montano
2015 J jnl
Undergraduate Students Compete in the IEEE Signal Processing Cup: Part 1 [sp Education].
IEEE Signal Process. Mag.
Kin-Man Lam, Carlos Oscar Sánchez Sorzano, Zhilan Zhang, Patrizio Campisi
2015 J jnl
Undergraduate Students Compete in the IEEE Signal Processing Cup: Part 2 [sp Education].
IEEE Signal Process. Mag.
Carlos Oscar Sánchez Sorzano, Anik Khan, Forsad Al Hossain, Tawab Ullash, Abu Raihan, Mohammed Ariful Haque, Kai-Wen Liang, Yen-Chen Wu, Guan-Lin Chao, Kuan-Hao Huang, Shao-Hua Sun, Ming-Jen Yang, Po-Wen Hsiao, Ti-Fen Pan, Yi-Ching Chiu, Wei-Chih Tu, Shao-Yi Chien, Emroz Khan, Shiekh Zia Uddin, Mukhlasur Rhaman Tanvir, Md. Kamrul Hasan, Jesús Cuenca Alba
2015 J jnl
Using neighborhood cohesiveness to infer interactions between protein domains.
Bioinform.
Joan Segura, Carlos Oscar Sánchez Sorzano, Jesús Cuenca Alba, Patrick Aloy, José María Carazo
2014 — conf
2D and 3D Alignment for Electron Microscopy via Graphics Processing Units.
IWBBIO
Eduardo Garcia de La Cueva, Miguel Mateo de La Puente, Alessandro Deideri, Ana Iriarte, Carlos Oscar Sánchez Sorzano, Gabriel Caffarena
2014 J jnl
A survey of dimensionality reduction techniques.
CoRR
Carlos Oscar Sánchez Sorzano, Javier Vargas, Alberto Domingo Pascual-Montano
2014 B conf
An image processing approach to the simulation of electron microscopy volumes of atomic structures.
ICIP
Carlos Oscar Sánchez Sorzano, Javier Vargas, Joaquín Otón, Vahid Abrishami, José Miguel de la Rosa-Trevín, S. del Riego, A. Fernandez-Alderete, C. Martinez-Rey, Roberto Marabini, José María Carazo
2014 J jnl
Comparing scientific performance among equals.
Scientometrics
Carlos Oscar Sánchez Sorzano, Javier Vargas, Gabriel Caffarena-Fernández, Ana Iriarte
2014 J jnl
Efficient initial volume determination from electron microscopy images of single particles.
Bioinform.
Javier Vargas, Ana-Lucia Álvarez-Cabrera, Roberto Marabini, José María Carazo, Carlos Oscar Sánchez Sorzano
2014 B conf
Elastic image registration to fully explore macromolecular dynamics by electron microscopy.
ICIP
Qiyu Jin, Carlos Oscar Sánchez Sorzano, Isabelle Callebaut, Florence Tama, Slavica Jonic
2014 — conf
Outlier detection for single particle analysis in Electron Microscopy.
IWBBIO
Carlos Oscar Sánchez Sorzano, Javier Vargas, José Miguel de la Rosa-Trevín, Airen Zaldívar-Peraza, Joaquín Otón, Vahid Abrishami, Ignacio Foche, Roberto Marabini, Gabriel Caffarena, José María Carazo
2013 J jnl
3DEM Loupe: analysis of macromolecular dynamics using structures from electron microscopy.
Nucleic Acids Res.
Rubén Nogales-Cadenas, Slavica Jonic, Florence Tama, A. A. Arteni, Daniel Tabas-Madrid, Miguel Vázquez, Alberto D. Pascual-Montano, Carlos Oscar Sánchez Sorzano
2013 J jnl
A pattern matching approach to the automatic selection of particles from low-contrast electron micrographs.
Bioinform.
Vahid Abrishami, Airen Zaldívar-Peraza, José Miguel de la Rosa-Trevín, Javier Vargas, Joaquín Otón, Roberto Marabini, Yoel Shkolnisky, José María Carazo, Carlos Oscar Sánchez Sorzano
2012 — conf
Image processing for Cellular tomography using soft X-rays.
ISBI
Carlos Oscar Sánchez Sorzano, Joaquín Otón, Jesús Cuenca Alba, Airen Zaldívar-Perez, Gabriel Caffarena, Javier Sanchez-Jimenez, Cédric Messaoudi, Sergio Marco, Roberto Marabini, José María Carazo
2010 J jnl
XMSF: Structure-preserving noise reduction and pre-segmentation in microscope tomography.
Bioinform.
Jose-Roman Bilbao-Castro, Carlos Oscar Sánchez Sorzano, Inmaculada García, José-Jesús Fernández
2009 J jnl
Marker-free image registration of electron tomography tilt-series.
BMC Bioinform.
Carlos Oscar Sánchez Sorzano, Cédric Messaoudi, Matthias Eibauer, Jose-Roman Bilbao-Castro, Reiner Hegerl, S. Nickell, Sergio Marco, José María Carazo
2008 — conf
Flexible image registration for the identification of best fitted protein models in 3D-EM maps.
ISBI
Laura Fernandez-de-Manuel, María J. Ledesma-Carbayo, Julian Atienza-Herrero, Carlos Oscar Sánchez Sorzano, José María Carazo, Andrés Santos
2008 J jnl
Volumetric restrictions in single particle 3DEM reconstruction.
Pattern Recognit.
Carlos Oscar Sánchez Sorzano, Javier A. Velázquez-Muriel, Roberto Marabini, Gabor T. Herman, José María Carazo
2007 J jnl
TomoJ: tomography software for three-dimensional reconstruction in transmission electron microscopy.
BMC Bioinform.
Cédric Messaoudi, Thomas Boudier, Carlos Oscar Sánchez Sorzano, Sergio Marco
2006 — conf
Consistent and Elastic Registration of Histological Sections Using Vector-Spline Regularization.
CVAMIA
Ignacio Arganda-Carreras, Carlos Oscar Sánchez Sorzano, Roberto Marabini, José María Carazo, Carlos Ortiz-de-Solorzano, Jan Kybic
2006 J jnl
Image processing and 3-D reconstruction in electron microscopy.
IEEE Signal Process. Mag.
José-Jesús Fernández, Carlos Oscar Sánchez Sorzano, Roberto Marabini, José María Carazo
2006 J jnl
Improved Bayesian image denoising based on wavelets with applications to electron microscopy.
Pattern Recognit.
Carlos Oscar Sánchez Sorzano, Elena Ortiz, Mariló López, Javier Rodrigo
2006 — conf
Molecular image registration using mutual information and differential evolution optimization.
ISBI
Bartosz Telenczuk, María J. Ledesma-Carbayo, Javier A. Velázquez-Muriel, Carlos Oscar Sánchez Sorzano, José María Carazo, Andrés Santos
2006 J jnl
Optimization problems in electron microscopy of single particles.
Ann. Oper. Res.
Carlos Oscar Sánchez Sorzano, Roberto Marabini, Alberto D. Pascual-Montano, Sjors H. W. Scheres, José María Carazo
2005 J jnl
Elastic registration of biological images using vector-spline regularization.
IEEE Trans. Biomed. Eng.
Carlos Oscar Sánchez Sorzano, Philippe Thévenaz, Michael Unser
2005 B conf
Grid Computing in 3D-EM Image Processing Using Xmipp.
CBMS
Sjors H. W. Scheres, A. J. Merino, Carlos Oscar Sánchez Sorzano, José María Carazo
2005 J jnl
Multiobjective algorithm parameter optimization using multivariate statistics in three-dimensional electron microscopy reconstruction.
Pattern Recognit.
Carlos Oscar Sánchez Sorzano, Roberto Marabini, Gabor T. Herman, José María Carazo
2004 J jnl
3-D reconstruction of 2-D crystals in real space.
IEEE Trans. Image Process.
Roberto Marabini, Carlos Oscar Sánchez Sorzano, Samuel Matej, José-Jesús Fernández, José María Carazo, Gabor T. Herman
2004 J jnl
Phan3D: design of biological phantoms in 3D electron microscopy.
Bioinform.
Jose-Roman Bilbao-Castro, Carlos Oscar Sánchez Sorzano, Inmaculada García, José-Jesús Fernández
2002 — conf
3D reconstruction of 2D crystals from projections in real space.
ISBI
Roberto Marabini, Gabor T. Herman, Carlos Oscar Sánchez Sorzano, José María Carazo, José-Jesús Fernández, Samuel Matej
2002 J jnl
Command-line interfaces can be efficiently brought to graphics: COLIMATE (the COmmand LIne MATE).
Softw. Pract. Exp.
Carlos Oscar Sánchez Sorzano, José María Carazo, Oswaldo Trelles
2002 — conf
Volumetric constraints in 3D tomography applied to electron microscopy.
ISBI
Roberto Marabini, Gabor T. Herman, Carlos Oscar Sánchez Sorzano, José María Carazo