Carlos Ortiz-de-Solorzano

32 papers B 1Journal 14Unranked 17
YearRankTypeTitle / Venue / Authors
2023 J jnl
IEEE Trans. Medical Imaging
Daniel Jiménez Sánchez, Mikel Ariz, Carlos E. de Andrea, Carlos Ortiz-de-Solorzano
2019 J jnl
IEEE Trans. Medical Imaging
Carlos Castilla, Martin Maska, Dmitry V. Sorokin, Erik Meijering, Carlos Ortiz-de-Solorzano
2019 J jnl
IEEE Trans. Medical Imaging
Mikel Ariz, Ricardo C. Abad, Gabriel Castellanos, Martin Martinez, Arrate Muñoz-Barrutia, María A. Fernández-Seara, Pau Pastor, María A. Pastor, Carlos Ortiz-de-Solorzano
2018 conf
ISBI
Carlos Castilla, Martin Maska, Dmitry V. Sorokin, Erik Meijering, Carlos Ortiz-de-Solorzano
2015 conf
Computer-Aided Diagnosis
Marc Puigvert, Gabriel Castellanos, Javier Uranga, Ricardo C. Abad, María A. Fernández-Seara, Pau Pastor, María A. Pastor, Arrate Muñoz-Barrutia, Carlos Ortiz-de-Solorzano
2015 conf
EMBC
María Anguiano, Carlos Castilla, Martin Maska, Cristina Ederra, Javier Fernández-Marqués, Rafael Peláez, Ana Rouzaut, Arrate Muñoz-Barrutia, Michal Kozubek, Carlos Ortiz-de-Solorzano
2015 B conf
ICIP
Martin Maska, Cristina Ederra, Javier Fernández-Marqués, Arrate Muñoz-Barrutia, Michal Kozubek, Carlos Ortiz-de-Solorzano
2015 J jnl
IEEE Signal Process. Mag.
Carlos Ortiz-de-Solorzano, Arrate Muñoz-Barrutia, Erik Meijering, Michal Kozubek
2014 J jnl
IEEE Syst. J.
Thomas Pengo, Arrate Muñoz-Barrutia, Carlos Ortiz-de-Solorzano
2014 J jnl
Bioinform.
Martin Maska, Vladimír Ulman, David Svoboda, Pavel Matula, Petr Matula, Cristina Ederra, Ainhoa Urbiola, Tomás España, Subramanian Venkatesan, Deepak M. W. Balak, Pavel Karas, Tereza Bolcková, Markéta Streitová, Craig Carthel, Stefano Coraluppi, Nathalie Harder, Karl Rohr, Klas E. G. Magnusson, Joakim Jaldén, Helen M. Blau, Oleh Dzyubachyk, Pavel Krízek, Guy M. Hagen, David Pastor-Escuredo, Daniel Jimenez-Carretero, María J. Ledesma-Carbayo, Arrate Muñoz-Barrutia, Erik Meijering, Michal Kozubek, Carlos Ortiz-de-Solorzano
2013 conf
ISBI
Martin Maska, Xabier Morales, Arrate Muñoz-Barrutia, Ana Rouzaut, Carlos Ortiz-de-Solorzano
2013 J jnl
Medical Image Anal.
Rina Dewi Rudyanto, Gorka Bastarrika, Gabriel de Biurrun, Jackeline Agorreta, Luis M. Montuenga, Carlos Ortiz-de-Solorzano, Arrate Muñoz-Barrutia
2013 conf
ISBI
Rina Dewi Rudyanto, Arrate Muñoz-Barrutia, Alejandro A. Díaz, James C. Ross, George R. Washko, Carlos Ortiz-de-Solorzano, Raúl San José Estépar
2013 conf
ISBI
Jirí Borovec, Jan Kybic, Michael Busta, Carlos Ortiz-de-Solorzano, Arrate Muñoz-Barrutia
2013 J jnl
IEEE Trans. Medical Imaging
Martin Maska, Ondrej Danek, Saray Garasa, Ana Rouzaut, Arrate Muñoz-Barrutia, Carlos Ortiz-de-Solorzano
2012 conf
ISBI
Mario Ceresa, Arrate Muñoz-Barrutia, Carlos Ortiz-de-Solorzano
2012 conf
ISBI
Martin Maska, Arrate Muñoz-Barrutia, Carlos Ortiz-de-Solorzano
2012 conf
ISBI
Rina Dewi Rudyanto, Ainhoa Agirre, Carlos Ortiz-de-Solorzano, Arrate Muñoz-Barrutia
2012 J jnl
Int. J. Biomed. Imaging
Arrate Muñoz-Barrutia, Mario Ceresa, Xabier Artaechevarria, Luis M. Montuenga, Carlos Ortiz-de-Solorzano
2010 conf
ISBI
Mario Ceresa, Xabier Artaechevarria, Arrate Muñoz-Barrutia, Carlos Ortiz-de-Solorzano
2010 J jnl
IEEE Trans. Image Process.
Arrate Muñoz-Barrutia, Xabier Artaechevarria, Carlos Ortiz-de-Solorzano
2009 conf
SCIA
Martin Maska, Ondrej Danek, Carlos Ortiz-de-Solorzano, Arrate Muñoz-Barrutia, Michal Kozubek, Ignacio Fernández García
2009 J jnl
IEEE Trans. Medical Imaging
Xabier Artaechevarria, Arrate Muñoz-Barrutia, Carlos Ortiz-de-Solorzano
2009 conf
SCIA
Ondrej Danek, Pavel Matula, Carlos Ortiz-de-Solorzano, Arrate Muñoz-Barrutia, Martin Maska, Michal Kozubek
2008 conf
ISBI
Carlos Ortiz-de-Solorzano, Thomas Pengo, Miguel Galarraga, Arrate Muñoz-Barrutia
2007 conf
ICIP (2)
Xabier Artaechevarria, Arrate Muñoz-Barrutia, Carlos Ortiz-de-Solorzano
2007 conf
ISBI
Xabier Artaechevarria, Arrate Muñoz-Barrutia, Carlos Ortiz-de-Solorzano
2006 conf
CVAMIA
Ignacio Arganda-Carreras, Carlos Oscar Sánchez Sorzano, Roberto Marabini, José María Carazo, Carlos Ortiz-de-Solorzano, Jan Kybic
2006 J jnl
IEEE Trans. Image Process.
U. Adiga, Ravi Malladi, Rodrigo Fernandez-Gonzalez, Carlos Ortiz-de-Solorzano
2005 J jnl
IEEE Trans. Image Process.
Rodrigo Fernandez-Gonzalez, Mary Helen Barcellos-Hoff, Carlos Ortiz-de-Solorzano
2000 J jnl
IEEE Trans. Biomed. Eng.
Alessandro Sarti, Carlos Ortiz-de-Solorzano, Stephen J. Lockett, Ravi Malladi
1998 conf
SIBGRAPI
Alessandro Sarti, Carlos Ortiz-de-Solorzano, Stephen J. Lockett, Ravi Malladi
Docker-README.md
← Index Docker-README.md markdown
# REDB Docker Setup

This document describes the Docker containerization for the REDB malware analysis framework.

## Overview

REDB has been containerized as a single unified image that supports both feature extraction and decompilation analysis. The container is stateless, processes files from S3 or local mounts, and exports results to ClickHouse database or via API callbacks.

## Architecture

- **Single Unified Container**: One image handles both feature extraction and decompilation
- **Runtime Tool Installation**: Tools (CAPA, DIE, Binary Ninja) installed at runtime from host snapshots
- **Stateless Processing**: No persistent storage required between runs
- **Multiple Invocation Modes**: Supports `--nomad-job`, `--s3`, `--s3-solo`, and `--path` modes
- **External Dependencies**: Connects to external ClickHouse and S3 services

## Files Structure

```
├── Dockerfile                 # Single unified container definition
├── docker-build.sh            # Build script with Docker Desktop bug workaround
├── docker-push.sh             # Push script to registry
├── test-docker.sh             # Container testing script
├── test-nomad.sh              # Nomad job mode testing
├── .dockerignore              # Build context exclusions
└── scripts/
    └── setup-and-run.sh       # Runtime tool setup entrypoint
```

## Tool Installation Strategy

The container uses a **runtime installation** approach:

1. **Base Image**: Contains Python dependencies and REDB code
2. **Runtime Setup**: `scripts/setup-and-run.sh` configures tools at container start
3. **Host Snapshots**: Binary Ninja installed from `/opt/binaryninja` if available
4. **System Tools**: CAPA and DIE expected at `/usr/bin/capa` and `/usr/bin/nfdc`

## Build and Run

### 1. Build Container

```bash
# Build unified image
./docker-build.sh

# Manual build
docker build --platform linux/amd64 -f Dockerfile -t redb:latest .
```

### 2. Run Modes

#### Nomad Job Mode (Primary)
```bash
# Feature extraction
docker run --rm \
  -e JOB_ID="analysis_001" \
  -e S3_KEY="samples/malware.exe" \
  -e S3_BUCKET="malware-bucket" \
  -e WORKER_TYPE="feature_extraction" \
  -e CALLBACK_URL="https://api.example.com/callbacks" \
  -e ANALYSIS_MODULES="BasicPropertiesExtractor,PEFeaturesExtractor" \
  -e CLICKHOUSE_HOST="clickhouse.example.com" \
  -e S3_ENDPOINT="s3.example.com" \
  -e S3_ACCESS_KEY="your-key" \
  -e S3_SECRET_KEY="your-secret" \
  redb:latest python3 start.py --nomad-job

# Decompilation (same container, different flags)
docker run --rm \
  -e JOB_ID="analysis_002" \
  -e S3_KEY="samples/malware.exe" \
  -e S3_BUCKET="malware-bucket" \
  -e WORKER_TYPE="decompilation" \
  -e CALLBACK_URL="https://api.example.com/callbacks" \
  -e ANALYSIS_MODULES="all" \
  -v /opt/binaryninja:/opt/binaryninja:ro \
  redb:latest python3 start.py --nomad-job --decompile
```

#### S3 Solo Mode
```bash
# Process single sample by S3 key (standard sharded path)
docker run --rm \
  -e S3_BUCKET="samples-bucket" \
  -e CLICKHOUSE_HOST="clickhouse.example.com" \
  -e S3_ENDPOINT="s3.example.com" \
  -e INDEX_PREFIX="redb" \
  -e REPO="test-analysis" \
  redb:latest python3 start.py --s3-solo "09/f7/09f7d02a3c2382199458c98a62b045145ee54ab6aba86166aecf3d10c3c1444c.zip"

# Process private sample (with prepath)
docker run --rm \
  -e S3_BUCKET="samples-bucket" \
  -e CLICKHOUSE_HOST="clickhouse.example.com" \
  -e S3_ENDPOINT="s3.example.com" \
  -e INDEX_PREFIX="redb" \
  -e REPO="test-analysis" \
  redb:latest python3 start.py --s3-solo "private/ab/cd/abcd1234567890abcdef1234567890abcdef1234567890abcdef123456.zip"
```

#### Local Files Mode
```bash
# Mount local samples
docker run --rm \
  -v /path/to/samples:/samples:ro \
  -v ./logs:/app/logs \
  -e CLICKHOUSE_HOST="clickhouse.example.com" \
  redb:latest python3 start.py --path /samples --repo local_test --index_prefix redb
```

## Environment Variables

### Required for Nomad Job Mode
- `JOB_ID` - Unique job identifier
- `S3_KEY` - S3 object key for sample
- `S3_BUCKET` - S3 bucket name
- `WORKER_TYPE` - "feature_extraction" or "decompilation"
- `CALLBACK_URL` - API endpoint for results
- `ANALYSIS_MODULES` - Comma-separated extractor list or "all"

### Database Configuration
- `CLICKHOUSE_HOST` - ClickHouse server hostname
- `CLICKHOUSE_PORT` - Port (default: 8123)
- `CLICKHOUSE_USER` - Database user (default: default)
- `CLICKHOUSE_PASSWORD` - Database password
- `CLICKHOUSE_DATABASE` - Database name (default: default)

### S3 Configuration
- `S3_ENDPOINT` - S3 endpoint URL
- `S3_ACCESS_KEY` - S3 access key
- `S3_SECRET_KEY` - S3 secret key
- `S3_SECURE` - "true" or "false" for HTTPS

### Processing Configuration
- `INDEX_PREFIX` - Database table prefix (default: redb)
- `REPO` - Repository identifier for this analysis batch
- `BATCH_SIZE` - Processing batch size (default: 10)
- `REDB_TIMEOUT` - Analysis timeout in seconds (default: 300)

### Tool Timeouts
- `CAPA_TIMEOUT` - CAPA analysis timeout (default: 300)
- `DIE_TIMEOUT` - DIE analysis timeout (default: 180)
- `BINJA_TIMEOUT` - Binary Ninja timeout (default: 1200)
- `DECOMPILE_EXTRACTOR_TIMEOUT` - Decompilation timeout (default: 2580)

## Binary Ninja Setup

For decompilation capabilities, mount Binary Ninja from host:

```bash
# Mount Binary Ninja installation
-v /opt/binaryninja:/opt/binaryninja:ro

# Mount license file
-v /path/to/license.dat:/home/analyzer/.binaryninja/license.dat:ro
```

The container will automatically detect and configure Binary Ninja at runtime.

## Registry Deployment

### Push to Registry
```bash
# Tag and push
./docker-push.sh

# Or manually
docker tag redb:latest your-registry/redb:latest
docker push your-registry/redb:latest
```

### Pull and Run
```bash
docker pull your-registry/redb:latest
docker run your-registry/redb:latest python3 start.py --nomad-job
```

## Testing

### Container Functionality Test
```bash
# Test with S3 key (standard sharded path)
./test-docker.sh "09/f7/09f7d02a3c2382199458c98a62b045145ee54ab6aba86166aecf3d10c3c1444c.zip"

# Test with private sample S3 key
./test-docker.sh "private/ab/cd/abcd1234567890abcdef1234567890abcdef1234567890abcdef123456.zip"
```

### Nomad Job Architecture Test
```bash
# Test Nomad job mode
./test-nomad.sh
```

## Development

### Interactive Container
```bash
# Debug container interactively
docker run -it --entrypoint /bin/bash redb:latest

# Check tool availability
docker run --rm redb:latest which python3
docker run --rm redb:latest ls -la /usr/bin/capa
```

### Build Troubleshooting

The build script includes workarounds for Docker Desktop bugs:

```bash
# If build hangs at "exporting to image", press Ctrl+C
# The image will still be created and tagged automatically
./docker-build.sh
```

### Container Logs
```bash
# View logs from mounted directory
docker run -v ./logs:/app/logs redb:latest python3 start.py --path /samples
tail -f logs/*.txt
```

## Production Notes

### Resource Requirements
- **Memory**: 2-4GB recommended (8GB for decompilation)
- **CPU**: 2+ cores recommended
- **Disk**: Minimal (stateless container)
- **Network**: Access to ClickHouse and S3 services

### Security
- Container runs as non-root user `analyzer` (UID 1000)
- Sample files should be mounted read-only
- No persistent state between container runs
- Isolated processing environment for malware analysis

### Deployment Architecture

This container is designed for:
- **Nomad job dispatch**: Single-use containers processing one sample each
- **Kubernetes jobs**: Batch processing with external orchestration
- **CI/CD pipelines**: Automated analysis in build systems
- **Development**: Local testing and debugging

The unified container approach means the same image handles both feature extraction and decompilation - the difference is only in the command-line flags used when starting the container.