Carlos Loucera

11 papers C 1Misc 1Journal 4Unranked 5
YearRankTypeTitle / Venue / Authors
2023 conf
CMSB
Pelin Gundogdu, Miriam Payá-Milans, Inmaculada Alamo-Alvarez, Isabel A. Nepomuceno-Chamorro, Joaquín Dopazo, Carlos Loucera
2022 J jnl
BioData Min.
Pelin Gundogdu, Carlos Loucera, Inmaculada Alamo-Alvarez, Joaquín Dopazo, Isabel Nepomuceno
2021 J jnl
Nucleic Acids Res.
María Peña-Chilet, Gema Roldán, Javier Perez-Florido, Francisco M. Ortuño, Rosario Carmona, Virginia Aquino, Daniel López-López, Carlos Loucera, Jose Luis Fernandez-Rueda, Asunción Gallego, Francisco García-García, Anna González-Neira, Guillermo Pita, Rocío Núñez-Torres, Javier Santoyo-Lopez, Carmen Ayuso, Pablo Minguez, Almudena Avila-Fernandez, Marta Corton, Miguel Ángel Moreno-Pelayo, Matías Morin, Alvaro Gallego-Martinez, Jose A. Lopez-Escamez, Salud Borrego, Guillermo Antiñolo, Jorge Amigo, Josefa Salgado-Garrido, Sara Pasalodos-Sanchez, Beatriz Morte, Fátima Al-Shahrour, Rafael Artuch, Javier Benitez, Luis Antonio Castaño, Ignacio Del Castillo, Aitor Delmiro, Carmina Espinos, Roser González, Daniel Grinberg, Encarnación Guillén, Pablo Lapunzina, Esther López, Ramon Martí, Montserrat Milá, Jose M. Millán, Virginia Nunes, Francesc Palau, Belen Perez, Luis A. Pérez-Jurado, Rosario Perona, Aurora Pujol, Feliciano Ramos, Antonia Ribes, Jordi Rosell, Eulalia Rovira, Jordi Surrallés, Isabel Tejada, Magdalena Ugarte, Ángel Carracedo, Ángel Alonso, Joaquín Dopazo
2021 J jnl
BioData Min.
Kinza Rian, Marina Esteban-Medina, Marta R. Hidalgo, Cankut Çubuk, Matias M. Falco, Carlos Loucera, Devrim Gunyel, Marek Ostaszewski, María Peña-Chilet, Joaquín Dopazo
2019 J jnl
BMC Bioinform.
Marina Esteban-Medina, María Peña-Chilet, Carlos Loucera, Joaquín Dopazo
2017 conf
ISSPIT
Jacobo Fanjul, Ignacio Santamaría, Carlos Loucera
2017 conf
ADHOC-NOW
Jacobo Fanjul, Jesús Ibáñez, Ignacio Santamaría, Carlos Loucera
2017 Misc conf
ICCS
Carlos Loucera, Andrés Iglesias, Akemi Gálvez
2017 conf
ICHSA
Carlos Loucera, Andrés Iglesias, Akemi Gálvez
2015 conf
IPAC
Andrés Iglesias, Akemi Gálvez, Carlos Loucera
2014 C conf
CW
Carlos Loucera, Akemi Gálvez, Andrés Iglesias
redb/extractors/elf_extractors/elf_relocations.py
← Index redb/extractors/elf_extractors/elf_relocations.py python
import inspect
from datetime import datetime, timezone
from typing import Any, List, Dict

from elftools.elf.elffile import ELFFile
from elftools.common.exceptions import ELFError

from redb.extractors.enum import Tag
from redb.extractors.elf_extractor import ELFExtractor
from redb.models.dataclasses import ELFRelocation


class ELFRelocationExtractor(ELFExtractor):

    def __init__(
        self,
        filepath,
        log,
        exporters=None,
        index_prefix=None,
        elastic_index=None,
        known_benign=False,
        known_malicious=False,
        elf=None,
    ):
        super().__init__(
            filepath,
            log,
            exporters,
            index_prefix,
            elastic_index,
            known_benign,
            known_malicious,
            elf,
        )
        self.elf_relocations = []
        self.elastic_index = self.index_prefix + "-elf_relocations"
        self.log.debug(inspect.currentframe().f_code.co_name)

    def _get_relocation_type_string(self, reloc_type: int, machine_arch: str) -> str:
        """Convert relocation type number to human-readable string based on architecture."""
        # This is a simplified mapping - real implementation would need comprehensive
        # architecture-specific relocation type mappings

        common_types = {
            0: "R_NONE",
            1: "R_DIRECT",
            2: "R_PC_RELATIVE",
            3: "R_GOT",
            4: "R_PLT",
            5: "R_COPY",
            6: "R_GLOB_DAT",
            7: "R_JMP_SLOT",
            8: "R_RELATIVE"
        }

        # Architecture-specific mappings could be added here
        if machine_arch == "x86_64":
            x86_64_types = {
                1: "R_X86_64_64",
                2: "R_X86_64_PC32",
                3: "R_X86_64_GOT32",
                4: "R_X86_64_PLT32",
                5: "R_X86_64_COPY",
                6: "R_X86_64_GLOB_DAT",
                7: "R_X86_64_JUMP_SLOT",
                8: "R_X86_64_RELATIVE"
            }
            return x86_64_types.get(reloc_type, f"R_X86_64_{reloc_type}")
        elif machine_arch == "x86":
            i386_types = {
                1: "R_386_32",
                2: "R_386_PC32",
                3: "R_386_GOT32",
                4: "R_386_PLT32",
                5: "R_386_COPY",
                6: "R_386_GLOB_DAT",
                7: "R_386_JMP_SLOT",
                8: "R_386_RELATIVE"
            }
            return i386_types.get(reloc_type, f"R_386_{reloc_type}")

        return common_types.get(reloc_type, f"R_UNKNOWN_{reloc_type}")

    def _extract_relocation_data(self, relocation, section_name: str, machine_arch: str) -> Dict:
        """Extract data from a single relocation entry."""
        try:
            # Get relocation offset
            relocation_offset = relocation.entry.get('r_offset', 0)

            # Get relocation type
            relocation_type = relocation.entry.get('r_info_type', 0)

            # Get symbol index
            relocation_symbol_index = relocation.entry.get('r_info_sym', 0)

            # Get addend (only present in RELA sections)
            relocation_addend = None
            if hasattr(relocation.entry, 'r_addend'):
                relocation_addend = relocation.entry.get('r_addend', 0)

            # Get symbol name if available
            relocation_symbol_name = ""
            if hasattr(relocation, 'symbol') and relocation.symbol:
                relocation_symbol_name = relocation.symbol.name or f"<symbol_{relocation_symbol_index}>"
            else:
                relocation_symbol_name = f"<symbol_{relocation_symbol_index}>"

            # Get type string mapping
            relocation_type_str = self._get_relocation_type_string(relocation_type, machine_arch)

            return ELFRelocation(
                relocation_offset=relocation_offset,
                relocation_type=relocation_type,
                relocation_type_str=relocation_type_str,
                relocation_symbol_index=relocation_symbol_index,
                relocation_symbol_name=relocation_symbol_name,
                relocation_section=section_name,
                relocation_addend=relocation_addend
            )

        except Exception as e:
            self.log.error(f"Error extracting relocation data: {e}")
            return None

    def _extract_relocations_from_section(self, section, machine_arch: str) -> List[Dict]:
        """Extract all relocations from a relocation section."""
        relocations = []

        try:
            if not hasattr(section, 'iter_relocations'):
                return relocations

            section_name = section.name or f"<unnamed_section>"

            for relocation in section.iter_relocations():
                reloc_data = self._extract_relocation_data(relocation, section_name, machine_arch)
                if reloc_data:
                    relocations.append(reloc_data)

        except Exception as e:
            self.log.error(f"Error extracting relocations from section {section.name}: {e}")

        return relocations

    def tag(self):
        return Tag.ELF_RELOCATIONS.value if hasattr(Tag, 'ELF_RELOCATIONS') else "elf_relocations"

    def extract(self):
        try:
            self.log.debug(inspect.currentframe().f_code.co_name)

            def extract_data(elf):
                # Get architecture for relocation type mapping
                machine_arch = self._get_architecture()
                all_relocations = []

                # Iterate through all sections looking for relocation sections with per-section error handling
                for section_index, section in enumerate(elf.iter_sections()):
                    try:
                        # Check if this is a relocation section (.rel or .rela)
                        if (section.name and
                            (section.name.startswith('.rel') or section.name.startswith('.rela')) and
                            hasattr(section, 'iter_relocations')):

                            section_relocations = self._extract_relocations_from_section(section, machine_arch)
                            all_relocations.extend(section_relocations)
                            self.log.debug(f"Extracted {len(section_relocations)} relocations from section {section.name}")
                    except Exception as e:
                        section_name = getattr(section, 'name', f'section_{section_index}')
                        self.log.warning(f"Error processing relocation section {section_name}: {e}")
                        # Continue processing other sections

                return all_relocations

            if not self._is_elf_file():
                return None

            result = self._with_elf_file(extract_data)
            if result is None:
                return None

            self.elf_relocations = result
            return self.elf_relocations

        except Exception as e:
            self.log.error(f"Error extracting ELF relocations {self.hash.sha256}: {e}")
            return None

    def prepare_export_data(self, exporter_type: str) -> Any:
        self.log.debug(inspect.currentframe().f_code.co_name)

        if exporter_type == "ElasticsearchExporter":
            return self.elf_relocations
        elif exporter_type == "ClickHouseExporter":
            try:
                # Return valid empty structure if no relocations (e.g., statically linked binary)
                # None is reserved for actual errors

                # Prepare data arrays for all relocations
                data = []
                current_time = datetime.now(timezone.utc)
                for reloc in self.elf_relocations:
                    row = [
                        self.sha256,
                        self.md5,
                        self.sha1,
                        reloc.relocation_offset,
                        reloc.relocation_type,
                        reloc.relocation_type_str,
                        reloc.relocation_symbol_index,
                        reloc.relocation_symbol_name,
                        reloc.relocation_addend,
                        reloc.relocation_section,
                        current_time
                    ]
                    data.append(row)

                column_names = [
                    'sha256', 'md5', 'sha1',
                    'relocation_offset', 'relocation_type', 'relocation_type_str',
                    'relocation_symbol_index', 'relocation_symbol_name',
                    'relocation_addend', 'relocation_section',
                    'analysis_date'
                ]

                if not data:
                    return None

                column_type_names = [
                    'FixedString(64)', 'FixedString(32)', 'FixedString(40)',
                    'UInt64', 'UInt32', 'LowCardinality(String)',
                    'UInt32', 'LowCardinality(String)',
                    'Nullable(Int64)', 'LowCardinality(String)',
                    'DateTime64(3, \'UTC\')'
                ]

                return (data, column_names, column_type_names)

            except Exception as e:
                self.log.error(f"Error preparing export data: {e}")
                raise

    def get_clickhouse_table(self) -> str:
        return "redb_elf_relocations"