Carlos J. Camacho

23 papers C 1Journal 21Unranked 1
YearRankTypeTitle / Venue / Authors
2018 J jnl
Optimal affinity ranking for automated virtual screening validated in prospective D3R grand challenges.
J. Comput. Aided Mol. Des.
Bentley M. Wingert, Rick Oerlemans, Carlos J. Camacho
2018 J jnl
Predicting protein targets for drug-like compounds using transcriptomics.
PLoS Comput. Biol.
Nicolas A. Pabon, Yan Xia, Samuel K. Estabrooks, Zhaofeng Ye, Amanda K. Herbrand, Evelyn Süß, Ricardo M. Biondi, Victoria A. Assimon, Jason E. Gestwicki, Jeffrey L. Brodsky, Carlos J. Camacho, Ziv Bar-Joseph
2016 J jnl
Choosing the Optimal Rigid Receptor for Docking and Scoring in the CSAR 2013/2014 Experiment.
J. Chem. Inf. Model.
Matthew P. Baumgartner, Carlos J. Camacho
2016 J jnl
Optimal strategies for virtual screening of induced-fit and flexible target in the 2015 D3R Grand Challenge.
J. Comput. Aided Mol. Des.
Zhaofeng Ye, Matthew P. Baumgartner, Bentley M. Wingert, Carlos J. Camacho
2015 J jnl
Indexing volumetric shapes with matching and packing.
Knowl. Inf. Syst.
David Ryan Koes, Carlos J. Camacho
2014 J jnl
Shape-based virtual screening with volumetric aligned molecular shapes.
J. Comput. Chem.
David Ryan Koes, Carlos J. Camacho
2013 J jnl
Lessons Learned in Empirical Scoring with smina from the CSAR 2011 Benchmarking Exercise.
J. Chem. Inf. Model.
David Ryan Koes, Matthew P. Baumgartner, Carlos J. Camacho
2012 J jnl
PocketQuery: protein-protein interaction inhibitor starting points from protein-protein interaction structure.
Nucleic Acids Res.
David Ryan Koes, Carlos J. Camacho
2012 J jnl
Small-molecule inhibitor starting points learned from protein-protein interaction inhibitor structure.
Bioinform.
David Ryan Koes, Carlos J. Camacho
2012 J jnl
Small-molecule inhibitor starting points learned from protein-protein interaction inhibitor structure.
Bioinform.
David Ryan Koes, Carlos J. Camacho
2012 J jnl
ZINCPharmer: pharmacophore search of the ZINC database.
Nucleic Acids Res.
David Ryan Koes, Carlos J. Camacho
2011 J jnl
Pharmer: Efficient and Exact Pharmacophore Search.
J. Chem. Inf. Model.
David Ryan Koes, Carlos J. Camacho
2010 J jnl
ANCHOR: a web server and database for analysis of protein-protein interaction binding pockets for drug discovery.
Nucleic Acids Res.
Lidio M. C. Meireles, Alexander S. Dömling, Carlos J. Camacho
2010 J jnl
Optimization of minimum set of protein-DNA interactions: a quasi exact solution with minimum over-fitting.
Bioinform.
N. A. Temiz, Andrew C. Trapp, Oleg A. Prokopyev, Carlos J. Camacho
2008 J jnl
Structural and Thermodynamic Approach to Peptide Immunogenicity.
PLoS Comput. Biol.
Carlos J. Camacho, Yasuhiro Katsumata, Dana P. Ascherman
2007 J jnl
FastContact: a free energy scoring tool for protein-protein complex structures.
Nucleic Acids Res.
P. Christoph Champ, Carlos J. Camacho
2005 J jnl
FastContact: rapid estimate of contact and binding free energies.
Bioinform.
Carlos J. Camacho, Chao Zhang
2004 J jnl
ClusPro: a fully automated algorithm for protein-protein docking.
Nucleic Acids Res.
Stephen R. Comeau, David W. Gatchell, Sandor Vajda, Carlos J. Camacho
2004 J jnl
ClusPro: an automated docking and discrimination method for the prediction of protein complexes.
Bioinform.
Stephen R. Comeau, David W. Gatchell, Sandor Vajda, Carlos J. Camacho
2004 J jnl
Consensus alignment server for reliable comparative modeling with distant templates.
Nucleic Acids Res.
Jahnavi C. Prasad, Sandor Vajda, Carlos J. Camacho
2004 — conf
What Works (and What Doesn't) in Estimating the Change in Free Energy due to Point Mutations in the Protein Interior.
Spanish Bioinformatics Conference
Marta Bueno, Carlos J. Camacho, Javier Sancho
2003 J jnl
Consensus alignment for reliable framework prediction in homology modeling.
Bioinform.
Jahnavi C. Prasad, Stephen R. Comeau, Sandor Vajda, Carlos J. Camacho
2003 C conf
Homology Modeling of Proteins Using Multiple Models and Consensus Sequence Alignment.
WABI
Jahnavi C. Prasad, Michael Silberstein, Carlos J. Camacho, Sandor Vajda