Carlos H. M. Rodrigues

16 papers Journal 15

Year	Rank	Type	Title / Venue / Authors
2024	J	`jnl`	piscesCSM: prediction of anticancer synergistic drug combinations. J. Cheminformatics Raghad Al-Jarf, Carlos H. M. Rodrigues, Yoochan Myung, Douglas E. V. Pires, David B. Ascher
2023	J	`jnl`	DDMut: predicting effects of mutations on protein stability using deep learning. Nucleic Acids Res. Yunzhuo Zhou, Qisheng Pan, Douglas E. V. Pires, Carlos H. M. Rodrigues, David B. Ascher
2023	J	`jnl`	DockNet: high-throughput protein-protein interface contact prediction. Bioinform. Nathan P. Williams, Carlos H. M. Rodrigues, Jia Truong, David B. Ascher, Jessica K. Holien
2023	J	`jnl`	LEGO-CSM: a tool for functional characterization of proteins. Bioinform. Thanh Binh Nguyen, Alex G. C. de Sá, Carlos H. M. Rodrigues, Douglas E. V. Pires, David B. Ascher
2022	J	`jnl`	CSM-Potential: mapping protein interactions and biological ligands in 3D space using geometric deep learning. Nucleic Acids Res. Carlos H. M. Rodrigues, David B. Ascher
2022	J	`jnl`	Structural landscapes of PPI interfaces. Briefings Bioinform. Carlos H. M. Rodrigues, Douglas E. V. Pires, Tom L. Blundell, David B. Ascher
2021	—	`ch.`	Identifying Genotype-Phenotype Correlations via Integrative Mutation Analysis. Artificial Neural Networks, 3rd Edition Edward Airey, Stephanie Portelli, Joicymara S. Xavier, Yoochan Myung, Michael Silk, Malancha Karmakar, João P. L. Velloso, Carlos H. M. Rodrigues, Hardik H. Parate, Anjali Garg, Raghad Al-Jarf, Lucy Barr, Juliana A. Geraldo, Pâmela M. Rezende, Douglas E. V. Pires, David B. Ascher
2021	J	`jnl`	MTR3D: identifying regions within protein tertiary structures under purifying selection. Nucleic Acids Res. Michael Silk, Douglas E. V. Pires, Carlos H. M. Rodrigues, Elston N. D'souza, Moshe Olshansky, Natalie Thorne, David B. Ascher
2021	J	`jnl`	mmCSM-PPI: predicting the effects of multiple point mutations on protein-protein interactions. Nucleic Acids Res. Carlos H. M. Rodrigues, Douglas E. V. Pires, David B. Ascher
2021	J	`jnl`	pdCSM-PPI: Using Graph-Based Signatures to Identify Protein-Protein Interaction Inhibitors. J. Chem. Inf. Model. Carlos H. M. Rodrigues, Douglas E. V. Pires, David B. Ascher
2020	J	`jnl`	EasyVS: a user-friendly web-based tool for molecule library selection and structure-based virtual screening. Bioinform. Douglas E. V. Pires, Wandré N. P. Veloso, Yoochan Myung, Carlos H. M. Rodrigues, Michael Silk, Pâmela M. Rezende, Francislon Silva, Joicymara S. Xavier, João P. L. Velloso, Carlos Henrique da Silveira, David B. Ascher
2020	J	`jnl`	mCSM-AB2: guiding rational antibody design using graph-based signatures. Bioinform. Yoochan Myung, Carlos H. M. Rodrigues, David B. Ascher, Douglas E. V. Pires
2020	J	`jnl`	mCSM-membrane: predicting the effects of mutations on transmembrane proteins. Nucleic Acids Res. Douglas E. V. Pires, Carlos H. M. Rodrigues, David B. Ascher
2019	J	`jnl`	mCSM-PPI2: predicting the effects of mutations on protein-protein interactions. Nucleic Acids Res. Carlos H. M. Rodrigues, Yoochan Myung, Douglas E. V. Pires, David B. Ascher
2018	J	`jnl`	DynaMut: predicting the impact of mutations on protein conformation, flexibility and stability. Nucleic Acids Res. Carlos H. M. Rodrigues, Douglas E. V. Pires, David B. Ascher
2018	J	`jnl`	Kinact: a computational approach for predicting activating missense mutations in protein kinases. Nucleic Acids Res. Carlos H. M. Rodrigues, David B. Ascher, Douglas E. V. Pires