Carlos G. Oliver

20 papers A* 2B 2Journal 16

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	A Comprehensive Benchmark for RNA 3D Structure-Function Modeling. CoRR Luis Wyss, Vincent Mallet, Wissam Karroucha, Karsten M. Borgwardt, Carlos G. Oliver
2025	J	`jnl`	Endowing protein language models with structural knowledge. Bioinform. Philip Hartout, Dexiong Chen, Paolo Pellizzoni, Carlos G. Oliver, Karsten M. Borgwardt
2024	J	`jnl`	3D-based RNA function prediction tools in rnaglib. CoRR Carlos G. Oliver, Vincent Mallet, Jérôme Waldispühl
2024	J	`jnl`	Endowing Protein Language Models with Structural Knowledge. CoRR Dexiong Chen, Philip Hartout, Paolo Pellizzoni, Carlos G. Oliver, Karsten M. Borgwardt
2024	B	`conf`	Structure- and Function-Aware Substitution Matrices via Learnable Graph Matching. RECOMB Paolo Pellizzoni, Carlos G. Oliver, Karsten M. Borgwardt
2023	J	`jnl`	Multimodal learning in clinical proteomics: enhancing antimicrobial resistance prediction models with chemical information. Bioinform. Giovanni Visonà, Diane Duroux, Lucas Miranda, Emese Sükei, Yiran Li, Karsten M. Borgwardt, Carlos G. Oliver
2023	A*	`conf`	ProteinShake: Building datasets and benchmarks for deep learning on protein structures. NeurIPS Tim Kucera, Carlos G. Oliver, Dexiong Chen, Karsten M. Borgwardt
2023	A*	`conf`	Unsupervised Manifold Alignment with Joint Multidimensional Scaling. ICLR Dexiong Chen, Bowen Fan, Carlos G. Oliver, Karsten M. Borgwardt
2022	J	`jnl`	Approximate Network Motif Mining Via Graph Learning. CoRR Carlos G. Oliver, Dexiong Chen, Vincent Mallet, Pericles Philippopoulos, Karsten M. Borgwardt
2022	J	`jnl`	RNAglib: a python package for RNA 2.5 D graphs. Bioinform. Vincent Mallet, Carlos G. Oliver, Jonathan Broadbent, William L. Hamilton, Jérôme Waldispühl
2022	J	`jnl`	Unsupervised Manifold Alignment with Joint Multidimensional Scaling. CoRR Dexiong Chen, Bowen Fan, Carlos G. Oliver, Karsten M. Borgwardt
2022	J	`jnl`	Vernal: a tool for mining fuzzy network motifs in RNA. Bioinform. Carlos G. Oliver, Vincent Mallet, Pericles Philippopoulos, William L. Hamilton, Jérôme Waldispühl
2021	J	`jnl`	Edge-similarity-aware Graph Neural Networks. CoRR Vincent Mallet, Carlos G. Oliver, William L. Hamilton
2020	J	`jnl`	Difficulty Scaling in Proof of Work for Decentralized Problem Solving. Ledger Pericles Philippopoulos, Alessandro Ricottone, Carlos G. Oliver
2020	J	`jnl`	OptiMol: Optimization of Binding Affinities in Chemical Space for Drug Discovery. J. Chem. Inf. Model. Jacques Boitreaud, Vincent Mallet, Carlos G. Oliver, Jérôme Waldispühl
2020	B	`conf`	Stochastic Sampling of Structural Contexts Improves the Scalability and Accuracy of RNA 3D Module Identification. RECOMB Roman Sarrazin-Gendron, Hua-Ting Yao, Vladimir Reinharz, Carlos G. Oliver, Yann Ponty, Jérôme Waldispühl
2020	J	`jnl`	VeRNAl: A Tool for Mining Fuzzy Network Motifs in RNA. CoRR Carlos G. Oliver, Vincent Mallet, Pericles Philippopoulos, William L. Hamilton, Jérôme Waldispühl
2019	J	`jnl`	Difficulty Scaling in Proof of Work for Decentralized Problem Solving. CoRR Pericles Philippopoulos, Alessandro Ricottone, Carlos G. Oliver
2019	J	`jnl`	Leveraging binding-site structure for drug discovery with point-cloud methods. CoRR Vincent Mallet, Carlos G. Oliver, Nicolas Moitessier, Jérôme Waldispühl
2017	J	`jnl`	Proposal for a fully decentralized blockchain and proof-of-work algorithm for solving NP-complete problems. CoRR Carlos G. Oliver, Alessandro Ricottone, Pericles Philippopoulos