Carlos D. Bustamante

22 papers A* 1Misc 5Journal 15Unranked 1

Year	Rank	Type	Title / Venue / Authors
2026	A*	`conf`	Efficient Chromosome Parallelization for Precision Medicine Genomic Workflows. AAAI Daniel Mas Montserrat, Ray Verma, Míriam Barrabés, Francisco M. de la Vega, Carlos D. Bustamante, Alexander G. Ioannidis
2025	J	`jnl`	Efficient Chromosome Parallelization for Precision Medicine Genomic Workflows. CoRR Daniel Mas Montserrat, Ray Verma, Míriam Barrabés, Francisco M. de la Vega, Carlos D. Bustamante, Alexander G. Ioannidis
2023	J	`jnl`	Neural ADMIXTURE for rapid genomic clustering. Nat. Comput. Sci. Albert Dominguez Mantes, Daniel Mas Montserrat, Carlos D. Bustamante, Xavier Giró-i-Nieto, Alexander G. Ioannidis
2022	J	`jnl`	Archetypal Analysis for population genetics. PLoS Comput. Biol. Julia Gimbernat-Mayol, Albert Dominguez Mantes, Carlos D. Bustamante, Daniel Mas Montserrat, Alexander G. Ioannidis
2021	J	`jnl`	Discovering prescription patterns in pediatric acute-onset neuropsychiatric syndrome patients. J. Biomed. Informatics Arturo López Pineda, Armin Pourshafeie, Alexander G. Ioannidis, Collin McCloskey Leibold, Avis L. Chan, Carlos D. Bustamante, Jennifer Frankovich, Genevieve L. Wojcik
2020	Misc	`conf`	Lai-Net: Local-Ancestry Inference with Neural Networks. ICASSP Daniel Mas Montserrat, Carlos D. Bustamante, Alexander G. Ioannidis
2020	Misc	`conf`	LitGen: Genetic Literature Recommendation Guided by Human Explanations. PSB Allen Nie, Arturo L. Pineda, Matt W. Wright, Hannah Wand, Bryan Wulf, Helio A. Costa, Ronak Y. Patel, Carlos D. Bustamante, James Zou
2019	J	`jnl`	Class-Conditional VAE-GAN for Local-Ancestry Simulation. CoRR Daniel Mas Montserrat, Carlos D. Bustamante, Alexander G. Ioannidis
2019	J	`jnl`	LitGen: Genetic Literature Recommendation Guided by Human Explanations. CoRR Allen Nie, Arturo L. Pineda, Matt W. Wright, Hannah Wand, Bryan Wulf, Helio A. Costa, Ronak Y. Patel, Carlos D. Bustamante, James Zou
2018	J	`jnl`	DeepTag: inferring all-cause diagnoses from clinical notes in under-resourced medical domain. CoRR Allen Nie, Ashley Zehnder, Rodney López Page, Arturo L. Pineda, Manuel A. Rivas, Carlos D. Bustamante, James Zou
2018	J	`jnl`	DeepTag: inferring diagnoses from veterinary clinical notes. npj Digit. Medicine Allen Nie, Ashley Zehnder, Rodney López Page, Yuhui Zhang, Arturo López Pineda, Manuel A. Rivas, Carlos D. Bustamante, James Zou
2018	J	`jnl`	Network Enhancement: a general method to denoise weighted biological networks. CoRR Bo Wang, Armin Pourshafeie, Marinka Zitnik, Junjie Zhu, Carlos D. Bustamante, Serafim Batzoglou, Jure Leskovec
2017	J	`jnl`	Addressing Beacon re-identification attacks: quantification and mitigation of privacy risks. J. Am. Medical Informatics Assoc. Jean Louis Raisaro, Florian Tramèr, Zhanglong Ji, Diyue Bu, Yongan Zhao, W. Knox Carey, David D. Lloyd, Heidi Sofia, Dixie Baker, Paul Flicek, Suyash S. Shringarpure, Carlos D. Bustamante, Shuang Wang, Xiaoqian Jiang, Lucila Ohno-Machado, Haixu Tang, Xiaofeng Wang, Jean-Pierre Hubaux
2017	J	`jnl`	FIRE: functional inference of genetic variants that regulate gene expression. Bioinform. Nilah M. Ioannidis, Joe R. Davis, Marianne K. DeGorter, Nicholas B. Larson, Shannon K. McDonnell, Amy J. French, Alexis J. Battle, Trevor J. Hastie, Stephen N. Thibodeau, Stephen B. Montgomery, Carlos D. Bustamante, Weiva Sieh, Alice S. Whittemore
2016	J	`jnl`	Efficient analysis of large datasets and sex bias with ADMIXTURE. BMC Bioinform. Suyash S. Shringarpure, Carlos D. Bustamante, Kenneth Lange, David H. Alexander
2014	Misc	`conf`	Imputation-based Assessment of Next Generation Rare Exome Variant Arrays. Pacific Symposium on Biocomputing Alicia R. Martin, Gerard Tse, Carlos D. Bustamante, Eimear E. Kenny
2014	Misc	`conf`	PATH-SCAN: A Reporting Tool for Identifying Clinically Actionable Variants. Pacific Symposium on Biocomputing Roxana Daneshjou, Zachary Zappala, Kimberly R. Kukurba, Sean M. Boyle, Kelly E. Ormond, Teri E. Klein, Michael Snyder, Carlos D. Bustamante, Russ B. Altman, Stephen B. Montgomery
2012	J	`jnl`	SnIPRE: Selection Inference Using a Poisson Random Effects Model. PLoS Comput. Biol. Kirsten E. Eilertson, James G. Booth, Carlos D. Bustamante
2010	J	`jnl`	ALCHEMY: a reliable method for automated SNP genotype calling for small batch sizes and highly homozygous populations. Bioinform. Mark H. Wright, Chih-Wei Tung, Keyan Zhao, Andy Reynolds, Susan McCouch, Carlos D. Bustamante
2009	J	`jnl`	Improving the Fitness of High-Dimensional Biomechanical Models via Data-Driven Stochastic Exploration. IEEE Trans. Biomed. Eng. Veronica J. Santos, Carlos D. Bustamante, Francisco J. Valero Cuevas
2005	—	`conf`	Detecting coevolving amino acid sites using Bayesian mutational mapping. ISMB (Supplement of Bioinformatics) Matthew W. Dimmic, Melissa J. Hubisz, Carlos D. Bustamante, Rasmus Nielsen
2005	Misc	`conf`	Session Introduction: Inferring SNP Function Using Evolutionary, Structural and Computational Methods. Pacific Symposium on Biocomputing Matthew W. Dimmic, Shamil R. Sunyaev, Carlos D. Bustamante