Carlos Alberto Montanari

15 papers Journal 14Unranked 1
YearRankTypeTitle / Venue / Authors
2022 J jnl
J. Chem. Inf. Model.
Alberto M. dos Santos, Amanda Ruslana Santana Oliveira, Clauber Henrique Costa, Peter W. Kenny, Carlos Alberto Montanari, Jaldyr de Jesus G. Varela, Jerônimo Lameira
2021 J jnl
J. Chem. Inf. Model.
Vinícius Bonatto, Anwar Shamim, Fernanda dos R. Rocho, Andrei Leitão, F. Javier Luque, Jerônimo Lameira, Carlos Alberto Montanari
2020 J jnl
J. Chem. Inf. Model.
José Rogério A. Silva, Lorenzo Cianni, Deborah Araujo, Pedro Henrique Jatai Batista, Daniela de Vita, Fabiana Rosini, Andrei Leitão, Jerônimo Lameira, Carlos Alberto Montanari
2020 J jnl
J. Chem. Inf. Model.
Clauber Henrique Costa, Vinícius Bonatto, Alberto M. dos Santos, Jerônimo Lameira, Andrei Leitão, Carlos Alberto Montanari
2017 J jnl
J. Comput. Aided Mol. Des.
Nádia Melo Borges, Peter W. Kenny, Carlos Alberto Montanari, Igor M. Prokopczyk, Jean F. R. Ribeiro, Josmar R. Rocha, Geraldo Rodrigues Sartori
2014 J jnl
J. Comput. Aided Mol. Des.
Peter W. Kenny, Andrei Leitão, Carlos Alberto Montanari
2013 J jnl
J. Comput. Aided Mol. Des.
Peter W. Kenny, Carlos Alberto Montanari, Igor M. Prokopczyk, Fernanda A. Sala, Geraldo Rodrigues Sartori
2013 J jnl
J. Comput. Aided Mol. Des.
Peter W. Kenny, Carlos Alberto Montanari, Igor M. Prokopczyk
2013 J jnl
J. Comput. Aided Mol. Des.
Peter W. Kenny, Carlos Alberto Montanari
2010 J jnl
J. Chem. Inf. Model.
Renato F. Freitas, Renato de Lima Bauab, Carlos Alberto Montanari
2010 conf
IWPACBB
Elisangela V. Costa, M. Emília Sousa, Josmar R. Rocha, Carlos Alberto Montanari, M. Madalena Pinto
2008 J jnl
J. Chem. Inf. Model.
Rafael V. C. Guido, Glaucius Oliva, Carlos Alberto Montanari, Adriano Defini Andricopulo
2003 J jnl
J. Comput. Aided Mol. Des.
Irwin Rose de Alencar Menezes, Julio Cesar Dias Lopes, Carlos Alberto Montanari, Glaucius Oliva, Fernando Pavão, Marcelo Santos Castilho, Paulo C. Vieira, Mônica Tallarico Pupo
2002 J jnl
J. Comput. Aided Mol. Des.
Anderson Coser Gaudio, Carlos Alberto Montanari
1996 J jnl
J. Comput. Aided Mol. Des.
Carlos Alberto Montanari, M. S. Tute, A. E. Beezer, Julie C. Mitchell
redb/extractors/decompiler/bninja/similarity/minhasher.py
← Index redb/extractors/decompiler/bninja/similarity/minhasher.py python
import logging
import random
from enum import Enum

from ..analysis.medium_level_normalization import MediumLevelNormalization

try:
    from .minhashcustom import MinHashCustom
    from ..analysis.low_level_normalization import LowLevelNormalization
except ImportError:
    # Fallback to absolute imports (for multiprocessing spawned processes)
    from redb.extractors.decompiler.bninja.similarity.minhashcustom import MinHashCustom
    from redb.extractors.decompiler.bninja.analysis.low_level_normalization import LowLevelNormalization

## Values for this configuration were extracted from https://github.com/danielplohmann/mcrit/blob/main/mcrit/config/MinHashConfig.py#L10
# Length in number of Shingles of which a minhash consists
# this value represents the length of sha256sum hash truncated
MINHASH_SIGNATURE_LENGTH: int = 64
# Number of bits per signature element (1-32 bits)
MINHASH_SIGNATURE_BITS: int = 8


class TokenKind(Enum):
    LLIL = "llil"
    TYPED_LLIL = "typed_llil"
    MLIL = "mlil"
    TYPED_MLIL = "typed_mlil"


class MinHasher:
    # stick to the default method
    MINHASH_STRATEGY_HASH_ALL = 1

    def __init__(self, seed, il_function, kind: TokenKind = TokenKind.LLIL):
        self._minhash_seeds = []
        self.il_func = il_function
        self.kind = kind
        self._minhash_permutation = []
        self._signature_segments = []
        self._initMinhashing(seed)

    def _initMinhashing(self, MINHASH_SEED=None):
        random.seed(MINHASH_SEED)
        # init sequence of seeds
        self._minhash_seeds = [
            random.randint(0, MinHashCustom.getHashMax()) for _ in range(MINHASH_SIGNATURE_LENGTH)
        ]

    def make_ngrams(self, tokens, n=3):
        """Take the ngrams of the IL we try to pass into the functions"""
        return [tuple(tokens[i:i+n]) for i in range(len(tokens) - n + 1)]

    def _extract_tokens(self):
        """Extract the IL tokens from the IL function, picking the right
        normalizer (LLIL/MLIL) and the right normalization mode
        (skeleton/typed) based on self.kind."""
        if self.kind in (TokenKind.LLIL, TokenKind.TYPED_LLIL):
            normalizer = LowLevelNormalization()
        elif self.kind in (TokenKind.MLIL, TokenKind.TYPED_MLIL):
            normalizer = MediumLevelNormalization()
        else:
            raise ValueError(f"Unsupported token kind: {self.kind}")

        # typed variants include operand type info, skeleton variants don't
        if self.kind in (TokenKind.TYPED_LLIL, TokenKind.TYPED_MLIL):
            normalize = normalizer.normalize_instr_with_operands
        else:
            normalize = normalizer.normalize_instruction_all_levels

        instructions = []
        for basic_block in self.il_func.basic_blocks:
            for il in basic_block:
                instructions.append(normalize(il))

        return instructions

    def calculateMinHash(self):
        """Calculate hash function every time, then take minimum shingle per shingler"""
        minhash_result = MinHashCustom(minhash_bits=MINHASH_SIGNATURE_BITS)
        minhash_signature = []

        tokens = self._extract_tokens()
        shingles = self.make_ngrams(tokens, n=3)

        # Functions with fewer than 3 IL instructions can't produce n-grams
        # Return empty minhash for such small functions (thunks, stubs, etc.)
        # Triggered by 39d8ad95b0323c37bd3134ab93ac4af44c66a1a8443a41c1ac02cec19bb2816a
        if not shingles:
            return []

        # Generate the MinHash
        for seed in self._minhash_seeds:
            hashed_shingles = [
                self.shingle_hash(shingle, seed) for shingle in shingles
            ]
            min_value = min(hashed_shingles)

            if MINHASH_SIGNATURE_BITS < 32:
                min_value %= (2 ** MINHASH_SIGNATURE_BITS)

            minhash_signature.append(min_value)

        minhash_result.setMinHash(minhash_signature)
        return minhash_result.getMinHashInt()

    def shingle_hash(self, shingle, hash_seed=0):
        """Produce a single 32bit UINT hash for a given shingle"""
        return MinHashCustom.hashData(shingle, hash_seed)