Carlos A. Silva

46 papers B 2C 2Journal 19Unranked 22
YearRankTypeTitle / Venue / Authors
2024 J jnl
Expert Syst. Appl.
Hugo M. Pereira, Ruben B. Freitas, Marino J. Maciel, Sara Pimenta, Marta Costa, Fátima Baltazar, Carlos A. Silva, José H. Correia
2022 C conf
IECON
Daniel F. Silva, Ana P. Lopes, Daniel Costa, José Cabral, Carlos A. Silva, Sérgio Lopes
2022 C conf
INDIN
Ana P. Lopes, Daniel F. Silva, Sérgio F. Lopes, José Higino Correia, Carlos M. G. S. Lima, Carlos A. Silva
2021 J jnl
Artif. Intell. Medicine
Carla Barros, Carlos A. Silva, Ana P. Pinheiro
2021 J jnl
CoRR
Adriano Pinto, Sérgio Pereira, Raphael Meier, Roland Wiest, Victor Alves, Mauricio Reyes, Carlos A. Silva
2021 J jnl
Medical Image Anal.
Adriano Pinto, Sérgio Pereira, Raphael Meier, Roland Wiest, Victor Alves, Mauricio Reyes, Carlos A. Silva
2021 J jnl
CoRR
Carlos A. Silva, Adriano Pinto, Sérgio Pereira, Ana Lopes
2021 J jnl
IEEE Access
Adriano Pinto, Joana Amorim, Arsany Hakim, Victor Alves, Mauricio Reyes, Carlos A. Silva
2020 J jnl
CoRR
Sérgio Pereira, Adriano Pinto, Joana Amorim, Alexandrine Ribeiro, Victor Alves, Carlos A. Silva
2020 conf
BrainLes@MICCAI (2)
Carlos A. Silva, Adriano Pinto, Sérgio Pereira, Ana Lopes
2019 J jnl
IEEE Trans. Medical Imaging
Sérgio Pereira, Adriano Pinto, Joana Amorim, Alexandrine Ribeiro, Victor Alves, Carlos A. Silva
2018 conf
MICCAI (3)
Sérgio Pereira, Victor Alves, Carlos A. Silva
2018 J jnl
CoRR
Sérgio Pereira, Victor Alves, Carlos A. Silva
2018 conf
MLCN/DLF/iMIMIC@MICCAI
Sérgio Pereira, Raphael Meier, Victor Alves, Mauricio Reyes, Carlos A. Silva
2018 J jnl
CoRR
Sérgio Pereira, Raphael Meier, Victor Alves, Mauricio Reyes, Carlos A. Silva
2018 conf
EMBC
João Carlos Gomes Simões, Tao Dong, Yili Yang, Carlos A. Silva
2018 conf
MICCAI (3)
Adriano Pinto, Sérgio Pereira, Raphael Meier, Victor Alves, Roland Wiest, Carlos A. Silva, Mauricio Reyes
2018 J jnl
CoRR
Adriano Pinto, Sérgio Pereira, Raphael Meier, Victor Alves, Roland Wiest, Carlos A. Silva, Mauricio Reyes
2018 J jnl
Medical Image Anal.
Sérgio Pereira, Raphael Meier, Richard McKinley, Roland Wiest, Victor Alves, Carlos A. Silva, Mauricio Reyes
2018 J jnl
Pattern Recognit.
Adriano Pinto, Sérgio Pereira, Deolinda M. L. D. Rasteiro, Carlos A. Silva
2018 J jnl
CoRR
Américo Oliveira, Sérgio Pereira, Carlos A. Silva
2018 J jnl
Expert Syst. Appl.
Américo Oliveira, Sérgio Pereira, Carlos A. Silva
2018 ed.
MLCN/DLF/iMIMIC@MICCAI
Danail Stoyanov, Zeike Taylor, Seyed Mostafa Kia, Ipek Oguz, Mauricio Reyes, Anne L. Martel, Lena Maier-Hein, Andre F. Marquand, Edouard Duchesnay, Tommy Löfstedt, Bennett A. Landman, M. Jorge Cardoso, Carlos A. Silva, Sérgio Pereira, Raphael Meier
2016 J jnl
IEEE Trans. Medical Imaging
Sérgio Pereira, Adriano Pinto, Victor Alves, Carlos A. Silva
2015 conf
BIOIMAGING
Sérgio Pereira, José Antonio Mariz, Nuno J. Sousa, J. H. Correia, Carlos A. Silva
2015 conf
EMBC
Adriano Pinto, Sérgio Pereira, Higino Correia, Jorge F. Oliveira, Deolinda M. L. D. Rasteiro, Carlos A. Silva
2015 conf
Brainles@MICCAI
Sérgio Pereira, Adriano Pinto, Victor Alves, Carlos A. Silva
2015 J jnl
Comput. Intell. Neurosci.
Adriënne M. Mendrik, Koen L. Vincken, Hugo J. Kuijf, Marcel Breeuwer, Willem H. Bouvy, Jeroen de Bresser, Amir Alansary, Marleen de Bruijne, Aaron Carass, Ayman El-Baz, Amod Jog, Ranveer Katyal, Ali R. Khan, Fedde van der Lijn, Qaiser Mahmood, Ryan Mukherjee, Annegreet van Opbroek, Sahil Paneri, Sérgio Pereira, Mikael Persson, Martin Rajchl, Duygu Sarikaya, Örjan Smedby, Carlos A. Silva, Henri A. Vrooman, Saurabh Vyas, Chunliang Wang, Liang Zhao, Geert Jan Biessels, Max A. Viergever
2015 conf
EMBC
Jorge Oliveira, Sérgio Pereira, Luís Gonçalves, Manuel Ferreira, Carlos A. Silva
2015 J jnl
IEEE Trans. Medical Imaging
Bjoern H. Menze, András Jakab, Stefan Bauer, Jayashree Kalpathy-Cramer, Keyvan Farahani, Justin S. Kirby, Yuliya Burren, Nicole Porz, Johannes Slotboom, Roland Wiest, Levente Lanczi, Elizabeth R. Gerstner, Marc-André Weber, Tal Arbel, Brian B. Avants, Nicholas Ayache, Patricia Buendia, D. Louis Collins, Nicolas Cordier, Jason J. Corso, Antonio Criminisi, Tilak Das, Herve Delingette, Çagatay Demiralp, Christopher R. Durst, Michel Dojat, Senan Doyle, Joana Festa, Florence Forbes, Ezequiel Geremia, Ben Glocker, Polina Golland, Xiaotao Guo, Andac Hamamci, Khan M. Iftekharuddin, Raj Jena, Nigel M. John, Ender Konukoglu, Danial Lashkari, José Antonio Mariz, Raphael Meier, Sérgio Pereira, Doina Precup, Stephen J. Price, Tammy Riklin Raviv, Syed M. S. Reza, Michael T. Ryan, Duygu Sarikaya, Lawrence H. Schwartz, Hoo-Chang Shin, Jamie Shotton, Carlos A. Silva, Nuno J. Sousa, Nagesh K. Subbanna, Gábor Székely, Thomas J. Taylor, Owen M. Thomas, Nicholas J. Tustison, Gözde B. Ünal, Flor Vasseur, Max Wintermark, Dong Hye Ye, Liang Zhao, Binsheng Zhao, Darko Zikic, Marcel Prastawa, Mauricio Reyes, Koen Van Leemput
2014 conf
EMBC
Rui Pereira, Carla Barros, Sérgio Pereira, Paulo M. Mendes, Carlos A. Silva
2014 conf
MeMeA
Carlos Honrado, Carlos A. Silva, Tao Dong
2014 conf
MeMeA
Catia Barbosa, Carlos A. Silva, Tao Dong
2013 B conf
CBMS
Jorge F. Oliveira, Graça Minas, Carlos A. Silva
2011 conf
EMBC
Carlos A. Silva, C. G. Lima, J. H. Correia
2008 conf
SIES
José Carlos Metrôlho, Carlos Couto, Carlos A. Silva, Adriano Tavares
2008 conf
SIES
Francisco Afonso, Carlos A. Silva, Adriano Tavares, Sergio Montenegro
2008 conf
ACP4IS@AOSD
Francisco Afonso, Carlos A. Silva, Nuno Brito, Sergio Montenegro, Adriano Tavares
2007 B conf
ECSA
Sérgio F. Lopes, Adriano Tavares, João Monteiro, Carlos A. Silva
2007 conf
ACP4IS
Francisco Afonso, Carlos A. Silva, Sergio Montenegro, Adriano Tavares
2007 conf
ECBS
Sérgio F. Lopes, Adriano Tavares, João Monteiro, Carlos A. Silva
2007 J jnl
J. Softw.
Sérgio F. Lopes, Adriano Tavares, João Monteiro, Carlos A. Silva
2006 conf
WISES
Francisco Afonso, Carlos A. Silva, Sergio Montenegro, Adriano Tavares
2003 conf
MAVEBA
Carlos M. G. S. Lima, Carlos A. Silva, Adriano Tavares, Jorge F. Oliveira
2003 conf
ISSPA (1)
Carlos M. G. S. Lima, Carlos A. Silva, Adriano Tavares, Jorge F. Oliveira
2003 conf
PROPOR
Carlos M. G. S. Lima, Adriano Tavares, Carlos A. Silva
redb/extractors/elf_extractors/elf_sections.py
← Index redb/extractors/elf_extractors/elf_sections.py python
import inspect
import hashlib
import math
from collections import Counter
from datetime import datetime, timezone
from typing import Any, List, Dict

from elftools.elf.elffile import ELFFile
from elftools.common.exceptions import ELFError

from redb.extractors.enum import Tag
from redb.extractors.elf_extractor import ELFExtractor
from redb.models.dataclasses import ELFSection


class ELFSectionExtractor(ELFExtractor):

    def __init__(
        self,
        filepath,
        log,
        exporters=None,
        index_prefix=None,
        elastic_index=None,
        known_benign=False,
        known_malicious=False,
        elf=None,
    ):
        super().__init__(
            filepath,
            log,
            exporters,
            index_prefix,
            elastic_index,
            known_benign,
            known_malicious,
            elf,
        )
        self.elf_sections = []
        self.elastic_index = self.index_prefix + "-elf_sections"
        self.log.debug(inspect.currentframe().f_code.co_name)

    def _is_empty_result(self, extracted_data) -> bool:
        """
        Override: Empty sections is an ERROR, not a valid empty case.
        A valid ELF file must have sections (at minimum a null section).
        """
        # Always return False - empty sections should be treated as an error
        return False

    def _calculate_entropy(self, data: bytes) -> float:
        """Calculate Shannon entropy of data."""
        if not data:
            return 0.0

        try:
            # Count frequency of each byte
            byte_counts = Counter(data)
            data_len = len(data)

            # Calculate entropy
            entropy = 0.0
            for count in byte_counts.values():
                if count > 0:
                    frequency = count / data_len
                    entropy -= frequency * math.log2(frequency)

            return entropy
        except Exception as e:
            self.log.error(f"Error calculating entropy: {e}")
            return 0.0

    def _map_section_type(self, sh_type_str: str) -> int:
        """Map section type string to enum value."""
        type_map = {
            'SHT_NULL': 0,
            'SHT_PROGBITS': 1,
            'SHT_SYMTAB': 2,
            'SHT_STRTAB': 3,
            'SHT_RELA': 4,
            'SHT_HASH': 5,
            'SHT_DYNAMIC': 6,
            'SHT_NOTE': 7,
            'SHT_NOBITS': 8,
            'SHT_REL': 9,
            'SHT_DYNSYM': 11
        }
        return type_map.get(sh_type_str, 0)

    def _decode_section_flags(self, flags: int) -> List[str]:
        """Decode section flags to human-readable strings."""
        flag_strings = []

        # Common ELF section flags
        if flags & 0x1:  # SHF_WRITE
            flag_strings.append('WRITE')
        if flags & 0x2:  # SHF_ALLOC
            flag_strings.append('ALLOC')
        if flags & 0x4:  # SHF_EXECINSTR
            flag_strings.append('EXECINSTR')
        if flags & 0x10:  # SHF_MERGE
            flag_strings.append('MERGE')
        if flags & 0x20:  # SHF_STRINGS
            flag_strings.append('STRINGS')
        if flags & 0x40:  # SHF_INFO_LINK
            flag_strings.append('INFO_LINK')
        if flags & 0x80:  # SHF_LINK_ORDER
            flag_strings.append('LINK_ORDER')
        if flags & 0x100:  # SHF_OS_NONCONFORMING
            flag_strings.append('OS_NONCONFORMING')
        if flags & 0x200:  # SHF_GROUP
            flag_strings.append('GROUP')
        if flags & 0x400:  # SHF_TLS
            flag_strings.append('TLS')

        return flag_strings if flag_strings else ['NONE']

    def _extract_section_data(self, section) -> Dict:
        """Extract data from a single section."""
        try:
            header = section.header

            # Get section name (handle empty names)
            section_name = section.name if section.name else f"<unnamed_{section.header.get('sh_name', 0)}>"

            # Get section type and map to enum
            sh_type_str = header.get('sh_type', 'SHT_NULL')
            section_type_enum = self._map_section_type(sh_type_str)
            section_type_str = sh_type_str.replace('SHT_', '') if sh_type_str.startswith('SHT_') else sh_type_str

            # Get section properties
            section_flags = header.get('sh_flags', 0)
            section_flags_str = self._decode_section_flags(section_flags)
            section_addr = header.get('sh_addr', 0)
            section_offset = header.get('sh_offset', 0)
            section_size = header.get('sh_size', 0)
            section_link = header.get('sh_link', 0)
            section_info = header.get('sh_info', 0)
            section_addralign = header.get('sh_addralign', 0)
            section_entsize = header.get('sh_entsize', 0)

            # Calculate entropy and hashes for section data
            section_entropy = 0.0
            section_sha256 = ""
            section_md5 = ""

            try:
                if section_size > 0 and section_type_str != 'NOBITS':
                    section_data = section.data()
                    if section_data:
                        # Calculate entropy
                        section_entropy = self._calculate_entropy(section_data)

                        # Calculate hashes
                        section_sha256 = hashlib.sha256(section_data).hexdigest()
                        section_md5 = hashlib.md5(section_data).hexdigest()
            except Exception as e:
                self.log.warning(f"Could not read section '{section_name}' data: {e}")
                section_entropy = 0.0
                section_sha256 = ""
                section_md5 = ""

            return ELFSection(
                section_name=section_name,
                section_type=section_type_enum,
                section_type_str=section_type_str,
                section_flags=section_flags,
                section_flags_str=section_flags_str,
                section_addr=section_addr,
                section_offset=section_offset,
                section_size=section_size,
                section_link=section_link,
                section_info=section_info,
                section_addralign=section_addralign,
                section_entsize=section_entsize,
                section_entropy=section_entropy,
                section_sha256=section_sha256,
                section_md5=section_md5
            )

        except Exception as e:
            self.log.error(f"Error extracting section data: {e}")
            return None

    def tag(self):
        return Tag.ELF_SECTIONS.value if hasattr(Tag, 'ELF_SECTIONS') else "elf_sections"

    def extract(self):
        try:
            self.log.debug(inspect.currentframe().f_code.co_name)

            def extract_data(elf):
                sections_data = []

                # Iterate through all sections with per-section error handling
                for section_index, section in enumerate(elf.iter_sections()):
                    try:
                        section_data = self._extract_section_data(section)
                        if section_data:
                            sections_data.append(section_data)
                        else:
                            self.log.warning(f"Failed to extract data for section {section_index}")
                    except Exception as e:
                        self.log.warning(f"Error processing section {section_index}: {e}")
                        # Continue processing other sections

                return sections_data

            if not self._is_elf_file():
                return None

            result = self._with_elf_file(extract_data)
            if result is None:
                return None

            self.elf_sections = result
            return self.elf_sections

        except Exception as e:
            self.log.error(f"Error extracting ELF sections {self.hash.sha256}: {e}")
            return None

    def prepare_export_data(self, exporter_type: str) -> Any:
        self.log.debug(inspect.currentframe().f_code.co_name)

        if exporter_type == "ElasticsearchExporter":
            return self.elf_sections
        elif exporter_type == "ClickHouseExporter":
            try:
                if not self.elf_sections:
                    return None

                # Prepare data arrays for all sections
                data = []
                current_time = datetime.now(timezone.utc)
                for section in self.elf_sections:
                    row = [
                        self.sha256,
                        self.md5,
                        self.sha1,
                        section.section_name,
                        section.section_type,
                        section.section_type_str,
                        section.section_flags,
                        section.section_flags_str,
                        section.section_addr,
                        section.section_offset,
                        section.section_size,
                        section.section_link,
                        section.section_info,
                        section.section_addralign,
                        section.section_entsize,
                        section.section_entropy,
                        section.section_sha256,
                        section.section_md5,
                        current_time
                    ]
                    data.append(row)

                column_names = [
                    'sha256', 'md5', 'sha1',
                    'section_name', 'section_type', 'section_type_str',
                    'section_flags', 'section_flags_str',
                    'section_addr', 'section_offset', 'section_size',
                    'section_link', 'section_info', 'section_addralign', 'section_entsize',
                    'section_entropy', 'section_sha256', 'section_md5',
                    'analysis_date'
                ]

                column_type_names = [
                    'FixedString(64)', 'FixedString(32)', 'FixedString(40)',
                    'LowCardinality(String)',
                    "Enum8('NULL'=0, 'PROGBITS'=1, 'SYMTAB'=2, 'STRTAB'=3, 'RELA'=4, 'HASH'=5, 'DYNAMIC'=6, 'NOTE'=7, 'NOBITS'=8, 'REL'=9, 'DYNSYM'=11)",
                    'LowCardinality(String)',
                    'UInt64',
                    'Array(LowCardinality(String))',
                    'UInt64', 'UInt64', 'UInt64',
                    'UInt32', 'UInt32', 'UInt64', 'UInt64',
                    'Float64',
                    'FixedString(64)', 'FixedString(32)',
                    'DateTime64(3, \'UTC\')'
                ]

                if not data:
                    return None

                return (data, column_names, column_type_names)

            except Exception as e:
                self.log.error(f"Error preparing export data: {e}")
                raise

    def get_clickhouse_table(self) -> str:
        return "redb_elf_sections"