Carlile Lavor

111 papers A 1B 1C 10Misc 1Journal 77Unranked 14
YearRankTypeTitle / Venue / Authors
2025 J jnl
A Probabilistic Approach in the Search Space of the Molecular Distance Geometry Problem.
J. Chem. Inf. Model.
Rômulo S. Marques, Michael Souza, Fernando Batista, Miguel Gonçalves, Carlile Lavor
2025 J jnl
On the Complexity of the Ordered Covering Problem in Distance Geometry.
CoRR
Michael Souza, Júlio Araújo, John Kesley Costa, Carlile Lavor
2024 J jnl
A Branch-and-Bound Algorithm for the Molecular Ordered Covering Problem.
J. Comput. Biol.
Michael Souza, Nilton Maia, Rômulo S. Marques, Carlile Lavor
2024 J jnl
An impossible combinatorial counting method in distance geometry.
Discret. Appl. Math.
Germano Abud, Jorge Alencar, Carlile Lavor, Leo Liberti, Antonio Mucherino
2024 J jnl
Hypercomplex Signal and Image Processing: Part 1 [From the Guest Editors].
IEEE Signal Process. Mag.
Nektarios A. Valous, Eckhard Hitzer, Salvatore Vitabile, Swanhild Bernstein, Carlile Lavor, Derek Abbott, Maria Elena Luna-Elizarrarás, Wilder Bezerra Lopes
2024 J jnl
Hypercomplex Signal and Image Processing: Part 2 [From the Guest Editors].
IEEE Signal Process. Mag.
Nektarios A. Valous, Eckhard Hitzer, Salvatore Vitabile, Swanhild Bernstein, Carlile Lavor, Derek Abbott, Maria Elena Luna-Elizarrarás, Wilder Bezerra Lopes
2023 J jnl
Cycle-based formulations in Distance Geometry.
Open J. Math. Optim.
Leo Liberti, Gabriele Iommazzo, Carlile Lavor, Nelson Maculan
2023 J jnl
Quantum Register Algebra: the mathematical language for quantum computing.
Quantum Inf. Process.
Jaroslav Hrdina, Dietmar Hildenbrand, Ales Návrat, Christian Steinmetz, Rafael Alves, Carlile Lavor, Petr Vasík, Ivan Eryganov
2023 — conf
The Ordered Covering Problem in Distance Geometry.
ISBRA
Michael Souza, Nilton Maia, Carlile Lavor
2022 J jnl
A quantum approach to the discretizable molecular distance geometry problem.
Quantum Inf. Process.
Carlile Lavor, Franklin L. Marquezino, Andrês Oliveira, Renato Portugal
2022 J jnl
Distance geometry and protein loop modeling.
J. Comput. Chem.
Rodrigo Labiak, Carlile Lavor, Michael Souza
2022 J jnl
Linear and geometric algebra approaches for sphere and spherical shell intersections in Rn.
Expert Syst. Appl.
Carlile Lavor, Rafael Alves, Leandro A. F. Fernandes
2022 J jnl
Preface: special issue on optimization in distance geometry.
J. Glob. Optim.
Andrés D. Báez-Sánchez, Carlile Lavor, Antonio Mucherino
2022 J jnl
Unassigned distance geometry and molecular conformation problems.
J. Glob. Optim.
Phillip M. Duxbury, Carlile Lavor, Leo Liberti, Luiz Leduíno de Salles Neto
2021 J jnl
A New Algorithm for the
Algorithmica
Douglas Soares Gonçalves, Carlile Lavor, Leo Liberti, Michael Souza
2021 J jnl
A conjecture on a continuous optimization model for the Golomb Ruler Problem.
RAIRO Oper. Res.
Phillip M. Duxbury, Carlile Lavor, Luiz Leduíno de Salles Neto
2021 J jnl
A note on the Cayley-Menger determinant and the Molecular Distance Geometry Problem.
Inf. Sci.
Luiz Leduíno de Salles Neto, Carlile Lavor, Weldon A. Lodwick
2021 J jnl
An impossible utopia in distance geometry.
CoRR
Germano Abud, Jorge Alencar, Carlile Lavor, Leo Liberti, Antonio Mucherino
2021 J jnl
Improving the sampling process in the interval Branch-and-Prune algorithm for the discretizable molecular distance geometry problem.
Appl. Math. Comput.
Carlile Lavor, Michael Souza, Luiz Mariano Carvalho, Douglas Soares Gonçalves, Antonio Mucherino
2021 J jnl
On the optimality of finding DMDGP symmetries.
Comput. Appl. Math.
Carlile Lavor, Andrês Oliveira, Wagner Rocha, Michael Souza
2021 J jnl
Orthogonality of isometries in the conformal model of the 3D space.
Graph. Model.
Carlile Lavor, Michael Souza, José Luis Aragón
2021 — conf
Pseudo-dihedral Angles in Proteins Providing a New Description of the Ramachandran Map.
GSI (2)
Wagner Rocha, Carlile Lavor, Leo Liberti, Thérèse E. Malliavin
2020 J jnl
A constrained interval approach to the generalized distance geometry problem.
Optim. Lett.
Luiz Leduíno de Salles Neto, Carlile Lavor, Weldon A. Lodwick
2020 J jnl
A new algorithm for the
CoRR
Douglas Soares Gonçalves, Carlile Lavor, Leo Liberti, Michael Souza
2020 C conf
An Online Calculator for Qubits Based on Geometric Algebra.
CGI
Dietmar Hildenbrand, Christian Steinmetz, Rafael Alves, Jaroslav Hrdina, Carlile Lavor
2020 J jnl
Cycle-based formulations in Distance Geometry.
CoRR
Leo Liberti, Gabriele Iommazzo, Carlile Lavor, Nelson Maculan
2020 C conf
MD-jeep: a New Release for Discretizable Distance Geometry Problems with Interval Data.
FedCSIS
Antonio Mucherino, Douglas Soares Gonçalves, Leo Liberti, Jung-Hsin Lin, Carlile Lavor, Nelson Maculan
2020 J jnl
Preface: Special issue on distances in optimization and graphs dedicated to the memory of Michel Deza.
Optim. Lett.
Antonio Mucherino, Carlile Lavor
2020 J jnl
The K-discretization and K-incident graphs for discretizable Distance Geometry.
Optim. Lett.
Germano Abud, Jorge Alencar, Carlile Lavor, Leo Liberti, Antonio Mucherino
2019 — book
A Primer on Quantum Computing
Franklin de Lima Marquezino, Renato Portugal, Carlile Lavor
2019 J jnl
A mathematical programming formulation for the Hartree-Fock problem on open-shell systems.
Optim. Lett.
Leo Liberti, Carlile Lavor, Nelson Maculan
2019 J jnl
Minimal NMR distance information for rigidity of protein graphs.
Discret. Appl. Math.
Carlile Lavor, Leo Liberti, Bruce Randall Donald, Bradley Worley, Benjamin Bardiaux, Thérèse E. Malliavin, Michael Nilges
2019 J jnl
On the polynomiality of finding KDMDGP re-orders.
Discret. Appl. Math.
Carlile Lavor, Michael Souza, Luiz Mariano Carvalho, Leo Liberti
2019 J jnl
Realizing Euclidean distance matrices by sphere intersection.
Discret. Appl. Math.
Jorge Alencar, Carlile Lavor, Leo Liberti
2019 J jnl
Systematic Exploration of Protein Conformational Space Using a Distance Geometry Approach.
J. Chem. Inf. Model.
Thérèse E. Malliavin, Antonio Mucherino, Carlile Lavor, Leo Liberti
2018 J jnl
A new algorithm for the small-field astrometric point-pattern matching problem.
J. Glob. Optim.
Cláudio P. Santiago, Carlile Lavor, Sérgio Assunção Monteiro, Alberto Krone-Martins
2018 J jnl
A symmetry-based splitting strategy for discretizable distance geometry problems.
J. Glob. Optim.
Felipe Fidalgo, Douglas Soares Gonçalves, Carlile Lavor, Leo Liberti, Antonio Mucherino
2018 J jnl
Recent results on assigned and unassigned distance geometry with applications to protein molecules and nanostructures.
Ann. Oper. Res.
Simon J. L. Billinge, Phillip M. Duxbury, Douglas Soares Gonçalves, Carlile Lavor, Antonio Mucherino
2018 J jnl
Tuning interval Branch-and-Prune for protein structure determination.
J. Glob. Optim.
Bradley Worley, Florent Delhommel, Florence Cordier, Thérèse E. Malliavin, Benjamin Bardiaux, Nicolas Wolff, Michael Nilges, Carlile Lavor, Leo Liberti
2017 — book
An Introduction to Distance Geometry applied to Molecular Geometry
Carlile Lavor, Leo Liberti, Weldon A. Lodwick, Tiago Mendonça da Costa
2017 J jnl
Calculating the possible conformations arising from uncertainty in the molecular distance geometry problem using constraint interval analysis.
Inf. Sci.
Tiago Mendonça da Costa, H. Bouwmeester, Weldon A. Lodwick, Carlile Lavor
2017 — book
Euclidean Distance Geometry - an Introduction.
Leo Liberti, Carlile Lavor
2017 J jnl
Feasibility check for the distance geometry problem: an application to molecular conformations.
Int. Trans. Oper. Res.
Agostinho Agra, Rosa Figueiredo, Carlile Lavor, Nelson Maculan, António Pereira, Cristina Requejo
2017 — conf
Modeling the Molecular Distance Geometry Problem Using Dihedral Angles.
ISBRA
Michael Souza, Carlile Lavor, Rafael Alves
2017 J jnl
New Error Measures and Methods for Realizing Protein Graphs from Distance Data.
Discret. Comput. Geom.
Claudia D'Ambrosio, Ky Khac Vu, Carlile Lavor, Leo Liberti, Nelson Maculan
2017 J jnl
Recent advances on the interval distance geometry problem.
J. Glob. Optim.
Douglas Soares Gonçalves, Antonio Mucherino, Carlile Lavor, Leo Liberti
2016 C conf
A New Approach to the Discretization of Multidimensional Scaling.
FedCSIS
Antonio Mucherino, Warley Gramacho, Jung-Hsin Lin, Carlile Lavor
2016 J jnl
A note on the sum of the largest signless Laplacian eigenvalues.
Electron. Notes Discret. Math.
Bruno D. Amaro, Leonardo Silva de Lima, Carla Silva Oliveira, Carlile Lavor, Nair Abreu
2016 J jnl
A projected gradient method for optimization over density matrices.
Optim. Methods Softw.
Douglas Soares Gonçalves, Márcia A. Gomes-Ruggiero, Carlile Lavor
2016 — conf
Advances on the Geometric Algebra approach to the Discretizable Molecular Distance Geometry Problem (DMDGP).
CGI (Short Papers)
Rafael Alves, Cipriano de Souza, Carlile Lavor
2016 J jnl
Assigned and unassigned distance geometry: applications to biological molecules and nanostructures.
4OR
Simon J. L. Billinge, Phillip M. Duxbury, Douglas Soares Gonçalves, Carlile Lavor, Antonio Mucherino
2016 J jnl
New error measures and methods for realizing protein graphs from distance data.
CoRR
Claudia D'Ambrosio, Ky Khac Vu, Carlile Lavor, Leo Liberti, Nelson Maculan
2016 J jnl
Open research areas in distance geometry.
CoRR
Leo Liberti, Carlile Lavor
2016 J jnl
Preface to the Special Issue on Many Faces of Distances.
Int. Trans. Oper. Res.
Carlile Lavor, Marcelo Firer, José Mario Martínez, Leo Liberti
2016 J jnl
Six mathematical gems from the history of distance geometry.
Int. Trans. Oper. Res.
Leo Liberti, Carlile Lavor
2015 J jnl
An algorithm for realizing Euclidean distance matrices.
Electron. Notes Discret. Math.
Jorge Alencar, Tibérius O. Bonates, Carlile Lavor, Leo Liberti
2015 J jnl
An algorithm to enumerate all possible protein conformations verifying a set of distance constraints.
BMC Bioinform.
Andrea Cassioli, Benjamin Bardiaux, Guillaume Bouvier, Antonio Mucherino, Rafael Alves, Leo Liberti, Michael Nilges, Carlile Lavor, Thérèse E. Malliavin
2015 J jnl
Discretization vertex orders in distance geometry.
Discret. Appl. Math.
Andrea Cassioli, Oktay Günlük, Carlile Lavor, Leo Liberti
2015 — conf
Distance Geometry on the Sphere.
JCDCGG
Leo Liberti, Grzegorz Swirszcz, Carlile Lavor
2015 J jnl
Preface.
Discret. Appl. Math.
Antonio Mucherino, Rosiane de Freitas Rodrigues, Carlile Lavor
2014 — conf
A Combinatorial Approach to Multidimensional Scaling.
BigData Congress
Jorge Alencar, Tibérius O. Bonates, Carlile Lavor
2014 J jnl
A new hybrid classical-quantum algorithm for continuous global optimization problems.
J. Glob. Optim.
Pedro C. S. Lara, Renato Portugal, Carlile Lavor
2014 C conf
An adaptive branching scheme for the Branch & Prune algorithm applied to Distance Geometry.
FedCSIS
Douglas Soares Gonçalves, Antonio Mucherino, Carlile Lavor
2014 J jnl
BetaMDGP: Protein Structure Determination Algorithm Based on the Beta-complex.
Trans. Comput. Sci.
Jeongyeon Seo, Jae-Kwan Kim, Joonghyun Ryu, Carlile Lavor, Antonio Mucherino, Deok-Soo Kim
2014 J jnl
Discretization orders for protein side chains.
J. Glob. Optim.
Virginia Costa, Antonio Mucherino, Carlile Lavor, Andrea Cassioli, Luiz Mariano Carvalho, Nelson Maculan
2014 J jnl
Euclidean Distance Geometry and Applications.
SIAM Rev.
Leo Liberti, Carlile Lavor, Nelson Maculan, Antonio Mucherino
2014 J jnl
Global convergence of diluted iterations in maximum-likelihood quantum tomography.
Quantum Inf. Comput.
Douglas Soares Gonçalves, Márcia A. Gomes-Ruggiero, Carlile Lavor
2014 J jnl
On the number of realizations of certain Henneberg graphs arising in protein conformation.
Discret. Appl. Math.
Leo Liberti, Benoît Masson, Jon Lee, Carlile Lavor, Antonio Mucherino
2013 J jnl
A discrete search algorithm for finding the structure of protein backbones and side chains.
Int. J. Bioinform. Res. Appl.
Silas Sallaume, Simone de Lima Martins, Luiz Satoru Ochi, Warley Gramacho da Silva, Carlile Lavor, Leo Liberti
2013 — conf
Counting the Number of Solutions of KDMDGP Instances.
GSI
Leo Liberti, Carlile Lavor, Jorge Alencar, Germano Abud
2013 — book
Distance Geometry: Theory, Methods, and Applications
Distance Geometry
Antonio Mucherino, Carlile Lavor, Leo Liberti, Nelson Maculan
2013 C conf
Energy-based Pruning Devices for the BP Algorithm applied to Distance Geometry.
FedCSIS
Douglas Soares Gonçalves, Antonio Mucherino, Carlile Lavor
2013 — ch.
Solving the Discretizable Molecular Distance Geometry Problem by Multiple Realization Trees.
Distance Geometry
Pedro Nucci, Loana Tito Nogueira, Carlile Lavor
2013 J jnl
Solving the molecular distance geometry problem with inaccurate distance data.
BMC Bioinform.
Michael Souza, Carlile Lavor, Albert Muritiba, Nelson Maculan
2013 — ch.
The Discretizable Molecular Distance Geometry Problem seems Easier on Proteins.
Distance Geometry
Leo Liberti, Carlile Lavor, Antonio Mucherino
2013 — conf
The integration of Clifford Algebra in the iBP algorithm for the DMDGP.
IWBBIO
Rafael Alves, Andrea Cassioli, Antonio Mucherino, Carlile Lavor, Leo Liberti
2013 J jnl
The interval Branch-and-Prune algorithm for the discretizable molecular distance geometry problem with inexact distances.
J. Glob. Optim.
Carlile Lavor, Leo Liberti, Antonio Mucherino
2012 — conf
A Parallel BP Algorithm for the Discretizable Distance Geometry Problem.
IPDPS Workshops
Warley Gramacho, Antonio Mucherino, Carlile Lavor, Nelson Maculan
2012 J jnl
Discretization orders for distance geometry problems.
Optim. Lett.
Carlile Lavor, Jon Lee, Audrey Lee-St. John, Leo Liberti, Antonio Mucherino, Maxim Sviridenko
2012 J jnl
Exploiting Symmetry Properties of the Discretizable molecular Distance Geometry Problem.
J. Bioinform. Comput. Biol.
Antonio Mucherino, Carlile Lavor, Leo Liberti
2012 J jnl
Local solutions of maximum likelihood estimation in quantum state tomography.
Quantum Inf. Comput.
Douglas Soares Gonçalves, Márcia A. Gomes-Ruggiero, Carlile Lavor, Osvaldo Jiménez Farias, Paulo H. Souto Ribeiro
2012 C conf
On suitable orders for discretizing Molecular Distance Geometry Problems related to protein side chains.
FedCSIS
Virginia Costa, Antonio Mucherino, Carlile Lavor, Luiz Mariano Carvalho, Nelson Maculan
2012 J jnl
Recent advances on the Discretizable Molecular Distance Geometry Problem.
Eur. J. Oper. Res.
Carlile Lavor, Leo Liberti, Nelson Maculan, Antonio Mucherino
2012 J jnl
The discretizable distance geometry problem.
Optim. Lett.
Antonio Mucherino, Carlile Lavor, Leo Liberti
2012 J jnl
The discretizable molecular distance geometry problem.
Comput. Optim. Appl.
Carlile Lavor, Leo Liberti, Nelson Maculan, Antonio Mucherino
2011 J jnl
A note on "A branch-and-prune algorithm for the molecular distance geometry problem".
Int. Trans. Oper. Res.
Carlile Lavor, Leo Liberti, Nelson Maculan
2011 — conf
A symmetry-driven BP algorithm for the Discretizable Molecular Distance Geometry Problem.
BIBM Workshops
Antonio Mucherino, Carlile Lavor, Leo Liberti
2011 C conf
Branch-and-Prune trees with bounded width.
CTW
Leo Liberti, Benoît Masson, Carlile Lavor, Antonio Mucherino
2011 J jnl
Hyperbolic smoothing and penalty techniques applied to molecular structure determination.
Oper. Res. Lett.
Michael Souza, Adilson Elias Xavier, Carlile Lavor, Nelson Maculan
2011 B conf
Influence of Pruning Devices on the Solution of Molecular Distance Geometry Problems.
SEA
Antonio Mucherino, Carlile Lavor, Therese E. Malliavin, Leo Liberti, Michael Nilges, Nelson Maculan
2011 J jnl
Molecular distance geometry methods: from continuous to discrete.
Int. Trans. Oper. Res.
Leo Liberti, Carlile Lavor, Antonio Mucherino, Nelson Maculan
2011 C conf
On the Number of Solutions of the Discretizable Molecular Distance Geometry Problem.
COCOA
Leo Liberti, Benoît Masson, Jon Lee, Carlile Lavor, Antonio Mucherino
2011 J jnl
On the computation of protein backbones by using artificial backbones of hydrogens.
J. Glob. Optim.
Carlile Lavor, Antonio Mucherino, Leo Liberti, Nelson Maculan
2011 J jnl
Polynomial cases of the Discretizable Molecular Distance Geometry Problem
CoRR
Leo Liberti, Carlile Lavor, Benoît Masson, Antonio Mucherino
2010 C conf
A parallel version of the Branch & Prune algorithm for the Molecular Distance Geometry Problem.
AICCSA
Antonio Mucherino, Carlile Lavor, Leo Liberti, El-Ghazali Talbi
2010 — conf
MD-jeep: An Implementation of a Branch and Prune Algorithm for Distance Geometry Problems.
ICMS
Antonio Mucherino, Leo Liberti, Carlile Lavor
2010 J jnl
On the number of solutions of the discretizable molecular distance geometry problem
CoRR
Leo Liberti, Benoît Masson, Jon Lee, Carlile Lavor, Antonio Mucherino
2010 — conf
On the solution of molecular distance geometry problems with interval data.
BIBM Workshops
Carlile Lavor, Leo Liberti, Antonio Mucherino
2009 A conf
Comparisons between an exact and a metaheuristic algorithm for the molecular distance geometry problem.
GECCO
Antonio Mucherino, Leo Liberti, Carlile Lavor, Nelson Maculan
2009 — conf
Computing artificial backbones of hydrogen atoms in order to discover protein backbones.
IMCSIT
Carlile Lavor, Antonio Mucherino, Leo Liberti, Nelson Maculan
2009 J jnl
Double variable neighbourhood search with smoothing for the molecular distance geometry problem.
J. Glob. Optim.
Leo Liberti, Carlile Lavor, Nelson Maculan, Fabrizio Marinelli
2009 — ch.
Molecular Distance Geometry Problem.
Encyclopedia of Optimization
Carlile Lavor, Leo Liberti, Nelson Maculan
2009 Misc conf
On a discretizable subclass of instances of the molecular distance geometry problem.
SAC
Carlile Lavor, Leo Liberti, Antonio Mucherino, Nelson Maculan
2009 J jnl
Reformulation in mathematical programming: An application to quantum chemistry.
Discret. Appl. Math.
Leo Liberti, Carlile Lavor, Nelson Maculan, Marco Antonio Chaer Nascimento
2009 C conf
The Molecular Distance Geometry Problem Applied to Protein Conformations.
CTW
Antonio Mucherino, Carlile Lavor, Nelson Maculan
2008 J jnl
A Branch-and-Prune algorithm for the Molecular Distance Geometry Problem.
Int. Trans. Oper. Res.
Leo Liberti, Carlile Lavor, Nelson Maculan
2008 J jnl
A continuous variable neighborhood search heuristic for finding the three-dimensional structure of a molecule.
Eur. J. Oper. Res.
Milan Drazic, Carlile Lavor, Nelson Maculan, Nenad Mladenovic
2008 J jnl
Extending the geometric build-up algorithm for the molecular distance geometry problem.
Inf. Process. Lett.
Ricardo dos Santos Carvalho, Carlile Lavor, Fábio Protti
2005 J jnl
A GA-Simplex Hybrid Algorithm for Global Minimization of Molecular Potential Energy Functions.
Ann. Oper. Res.
Helio J. C. Barbosa, Carlile Lavor, Fernanda M. P. Raupp
2004 J jnl
A Function to Test Methods Applied to Global Minimization of Potential Energy of Molecules.
Numer. Algorithms
Carlile Lavor, Nelson Maculan
2000 — conf
A Hybrid Genetic Algorithm for Finding Stable Conformations of Small Molecules.
SBRN
Helio J. C. Barbosa, Fernanda M. P. Raupp, Carlile Lavor, H. Lima, Nelson Maculan