Carl Barton

38 papers B 2C 4Misc 1Journal 22Unranked 9
YearRankTypeTitle / Venue / Authors
2025 J jnl
Unbiased and Error-Detecting Combinatorial Pooling Experiments with Balanced Constant-Weight Gray Codes for Consecutive Positives Detection.
CoRR
Guanchen He, Vasilisa A. Kovaleva, Carl Barton, Paul G. Thomas, Mikhail V. Pogorelyy, Hannah V. Meyer, Qin Huang
2025 J jnl
Unbiased and error-detecting combinatorial pooling experiments with balanced constant-weight Gray codes for consecutive positives detection.
Bioinform.
Guanchen He, Vasilisa A. Kovaleva, Carl Barton, Paul G. Thomas, Mikhail V. Pogorelyy, Hannah V. Meyer, Qin Huang
2024 Misc conf
A novel hierarchy-based knowledge discovery framework for elucidating human aging-related phenotypic abnormalities.
SAC
Cen Wan, Carl Barton
2022 J jnl
On the average-case complexity of pattern matching with wildcards.
Theor. Comput. Sci.
Carl Barton
2020 J jnl
Indexing weighted sequences: Neat and efficient.
Inf. Comput.
Carl Barton, Tomasz Kociumaka, Chang Liu, Solon P. Pissis, Jakub Radoszewski
2018 J jnl
ChromoTrace: Computational reconstruction of 3D chromosome configurations for super-resolution microscopy.
PLoS Comput. Biol.
Carl Barton, Sandro Morganella, Øyvind Ødegård-Fougner, Stephanie Alexander, Jonas Ries, Tomas W. Fitzgerald, Jan Ellenberg, Ewan Birney
2018 J jnl
Crochemore's Partitioning on Weighted Strings and Applications.
Algorithmica
Carl Barton, Solon P. Pissis
2018 J jnl
Fast Average-Case Pattern Matching on Weighted Sequences.
Int. J. Found. Comput. Sci.
Carl Barton, Chang Liu, Solon P. Pissis
2018 C conf
Longest Common Prefixes with k-Errors and Applications.
SPIRE
Lorraine A. K. Ayad, Carl Barton, Panagiotis Charalampopoulos, Costas S. Iliopoulos, Solon P. Pissis
2017 J jnl
A faster and more accurate heuristic for cyclic edit distance computation.
Pattern Recognit. Lett.
Lorraine A. K. Ayad, Carl Barton, Solon P. Pissis
2017 J jnl
Fast circular dictionary-matching algorithm.
Math. Struct. Comput. Sci.
Tanver Athar, Carl Barton, Widmer Bland, Jia Gao, Costas S. Iliopoulos, Chang Liu, Solon P. Pissis
2017 J jnl
Indexing Weighted Sequences: Neat and Efficient.
CoRR
Carl Barton, Tomasz Kociumaka, Chang Liu, Solon P. Pissis, Jakub Radoszewski
2016 B conf
Efficient Index for Weighted Sequences.
CPM
Carl Barton, Tomasz Kociumaka, Solon P. Pissis, Jakub Radoszewski
2016 J jnl
Efficient Index for Weighted Sequences.
CoRR
Carl Barton, Tomasz Kociumaka, Solon P. Pissis, Jakub Radoszewski
2016 J jnl
Linear-time computation of prefix table for weighted strings & applications.
Theor. Comput. Sci.
Carl Barton, Chang Liu, Solon P. Pissis
2016 C conf
On-Line Pattern Matching on Uncertain Sequences and Applications.
COCOA
Carl Barton, Chang Liu, Solon P. Pissis
2015 B conf
Accurate and Efficient Methods to Improve Multiple Circular Sequence Alignment.
SEA
Carl Barton, Costas S. Iliopoulos, Ritu Kundu, Solon P. Pissis, Ahmad Retha, Fatima Vayani
2015 C conf
Average-Case Optimal Approximate Circular String Matching.
LATA
Carl Barton, Costas S. Iliopoulos, Solon P. Pissis
2015 J jnl
Fast Average-Case Pattern Matching on Weighted Sequences.
CoRR
Carl Barton, Chang Liu, Solon P. Pissis
2015 J jnl
Global and local sequence alignment with a bounded number of gaps.
Theor. Comput. Sci.
Carl Barton, Tomás Flouri, Costas S. Iliopoulos, Solon P. Pissis
2015 — conf
Linear-Time Computation of Prefix Table for Weighted Strings.
WORDS
Carl Barton, Solon P. Pissis
2015 — conf
Parallelising the Computation of Minimal Absent Words.
PPAM (2)
Carl Barton, Alice Héliou, Laurent Mouchard, Solon P. Pissis
2014 J jnl
Average-Case Optimal Approximate Circular String Matching.
CoRR
Carl Barton, Costas S. Iliopoulos, Solon P. Pissis
2014 J jnl
Extending alignments with k-mismatches and ℓ-gaps.
Theor. Comput. Sci.
Carl Barton, Costas S. Iliopoulos, Inbok Lee, Laurent Mouchard, Kunsoo Park, Solon P. Pissis
2014 J jnl
Fast algorithms for approximate circular string matching.
Algorithms Mol. Biol.
Carl Barton, Costas S. Iliopoulos, Solon P. Pissis
2014 C conf
Fast and Simple Computations Using Prefix Tables Under Hamming and Edit Distance.
IWOCA
Carl Barton, Costas S. Iliopoulos, Solon P. Pissis, William F. Smyth
2014 J jnl
Linear-time Computation of Minimal Absent Words Using Suffix Array.
CoRR
Carl Barton, Alice Héliou, Laurent Mouchard, Solon P. Pissis
2014 J jnl
Linear-time computation of minimal absent words using suffix array.
BMC Bioinform.
Carl Barton, Alice Héliou, Laurent Mouchard, Solon P. Pissis
2014 J jnl
On the Average-case Complexity of Pattern Matching with Wildcards.
CoRR
Carl Barton, Costas S. Iliopoulos
2014 — conf
Optimal Computation of all Repetitions in a Weighted String.
ICABD
Carl Barton, Solon P. Pissis
2014 J jnl
Optimal computation of all tandem repeats in a weighted sequence.
Algorithms Mol. Biol.
Carl Barton, Costas S. Iliopoulos, Solon P. Pissis
2013 — conf
GapsMis: flexible sequence alignment with a bounded number of gaps.
BCB
Carl Barton, Tomás Flouri, Costas S. Iliopoulos, Solon P. Pissis
2013 — conf
Identification of All Exact and Approximate Inverted Repeats in Regular and Weighted Sequences.
EANN (2)
Carl Barton, Costas S. Iliopoulos, Nicola J. Mulder, Bruce W. Watson
2013 J jnl
Querying highly similar sequences.
Int. J. Comput. Biol. Drug Des.
Carl Barton, Mathieu Giraud, Costas S. Iliopoulos, Thierry Lecroq, Laurent Mouchard, Solon P. Pissis
2012 — conf
Conceptualization and Significance Study of a New Appliation CS-MIR.
AIAI (1)
Kaichun K. Chang, Carl Barton, Costas S. Iliopoulos, Jyh-Shing Roger Jang
2012 — conf
Melodic String Matching via Interval Consolidation and Fragmentation.
AIAI (2)
Carl Barton, Emilios Cambouropoulos, Costas S. Iliopoulos, Zsuzsanna Lipták
2012 — conf
On the repetitive collection indexing problem.
BIBM Workshops
Ali Alatabbi, Carl Barton, Costas S. Iliopoulos
2012 — conf
Querying Highly Similar Structured Sequences via Binary Encoding and Word Level Operations.
AIAI (2)
Ali Alatabbi, Carl Barton, Costas S. Iliopoulos, Laurent Mouchard