Carito Guziolowski

34 papers A* 1Journal 21Unranked 9
YearRankTypeTitle / Venue / Authors
2024 J jnl
Boolean Network Models of Human Preimplantation Development.
J. Comput. Biol.
Mathieu Bolteau, Lokmane Chebouba, Laurent David, Jérémie Bourdon, Carito Guziolowski
2024 — book
Modeling Biological Networks as Logic Programs. (Modélisation de réseaux biologiques à l'aide des programmes logiques).
Carito Guziolowski
2023 — conf
Inferring Boolean Networks from Single-Cell Human Embryo Datasets.
ISBRA
Mathieu Bolteau, Jérémie Bourdon, Laurent David, Carito Guziolowski
2023 J jnl
Predicting weighted unobserved nodes in a regulatory network using answer set programming.
BMC Bioinform.
Sophie Le Bars, Mathieu Bolteau, Jérémie Bourdon, Carito Guziolowski
2021 J jnl
Large-scale regulatory and signaling network assembly through linked open data.
Database J. Biol. Databases Curation
Marie Lefebvre, Alban Gaignard, Maxime Folschette, Jérémie Bourdon, Carito Guziolowski
2020 J jnl
A pipeline to create predictive functional networks: application to the tumor progression of hepatocellular carcinoma.
BMC Bioinform.
Maxime Folschette, Vincent Legagneux, Arnaud Poret, Lokmane Chebouba, Carito Guziolowski, Nathalie Théret
2020 — conf
Comparing Probabilistic and Logic Programming Approaches to Predict the Effects of Enzymes in a Neurodegenerative Disease Model.
CMSB
Sophie Le Bars, Jérémie Bourdon, Carito Guziolowski
2019 — ch.
Logic and Linear Programs to Understand Cancer Response.
Automated Reasoning for Systems Biology and Medicine
Misbah Razzaq, Lokmane Chebouba, Pierre Le Jeune, Hanen Mhamdi, Carito Guziolowski, Jérémie Bourdon
2018 J jnl
Computational discovery of dynamic cell line specific Boolean networks from multiplex time-course data.
PLoS Comput. Biol.
Misbah Razzaq, Loïc Paulevé, Anne Siegel, Julio Saez-Rodriguez, Jérémie Bourdon, Carito Guziolowski
2018 — conf
Computing Diverse Boolean Networks from Phosphoproteomic Time Series Data.
CMSB
Misbah Razzaq, Roland Kaminski, Javier Romero, Torsten Schaub, Jérémie Bourdon, Carito Guziolowski
2018 J jnl
Constraints on signaling network logic reveal functional subgraphs on Multiple Myeloma OMIC data.
BMC Syst. Biol.
Bertrand Miannay, Stéphane Minvielle, Florence Magrangeas, Carito Guziolowski
2018 J jnl
Discriminate the response of Acute Myeloid Leukemia patients to treatment by using proteomics data and Answer Set Programming.
BMC Bioinform.
Lokmane Chebouba, Bertrand Miannay, Dalila Boughaci, Carito Guziolowski
2018 J jnl
Proteomics Versus Clinical Data and Stochastic Local Search Based Feature Selection for Acute Myeloid Leukemia Patients' Classification.
J. Medical Syst.
Lokmane Chebouba, Dalila Boughaci, Carito Guziolowski
2017 — conf
Constraints On Signaling Networks Logic Reveal Functional Subgraphs On Multiple Myeloma OMIC Data.
BCB
Bertrand Miannay, Stéphane Minvielle, Olivier Roux, Florence Magrangeas, Carito Guziolowski
2017 J jnl
Identification of bifurcation transitions in biological regulatory networks using Answer-Set Programming.
Algorithms Mol. Biol.
Louis Fippo Fitime, Olivier F. Roux, Carito Guziolowski, Loïc Paulevé
2017 J jnl
caspo: a toolbox for automated reasoning on the response of logical signaling networks families.
Bioinform.
Santiago Videla, Julio Saez-Rodriguez, Carito Guziolowski, Anne Siegel
2016 J jnl
Boolean network identification from perturbation time series data combining dynamics abstraction and logic programming.
Biosyst.
Max Ostrowski, Loïc Paulevé, Torsten Schaub, Anne Siegel, Carito Guziolowski
2016 J jnl
Deciphering transcriptional regulations coordinating the response to environmental changes.
BMC Bioinform.
Vicente Acuña, Andrés Aravena, Carito Guziolowski, Damien Eveillard, Anne Siegel, Alejandro Maass
2015 — conf
Boolean Network Identification from Multiplex Time Series Data.
CMSB
Max Ostrowski, Loïc Paulevé, Torsten Schaub, Anne Siegel, Carito Guziolowski
2015 J jnl
Extended notions of sign consistency to relate experimental data to signaling and regulatory network topologies.
BMC Bioinform.
Sven Thiele, Luca Cerone, Julio Saez-Rodriguez, Anne Siegel, Carito Guziolowski, Steffen Klamt
2015 — conf
Integrating Time-Series Data in Large-Scale Discrete Cell-Based Models.
HSB
Louis Fippo Fitime, Christian Schuster, Peter Angel, Olivier Roux, Carito Guziolowski
2015 J jnl
Learning Boolean logic models of signaling networks with ASP.
Theor. Comput. Sci.
Santiago Videla, Carito Guziolowski, Federica Eduati, Sven Thiele, Martin Gebser, Jacques Nicolas, Julio Saez-Rodriguez, Torsten Schaub, Anne Siegel
2014 J jnl
Exhaustively characterizing feasible logic models of a signaling network using Answer Set Programming.
Bioinform.
Carito Guziolowski, Santiago Videla, Federica Eduati, Sven Thiele, Thomas Cokelaer, Anne Siegel, Julio Saez-Rodriguez
2013 J jnl
Exhaustively characterizing feasible logic models of a signaling network using Answer Set Programming.
Bioinform.
Carito Guziolowski, Santiago Videla, Federica Eduati, Sven Thiele, Thomas Cokelaer, Anne Siegel, Julio Saez-Rodriguez
2012 — conf
Revisiting the Training of Logic Models of Protein Signaling Networks with ASP.
CMSB
Santiago Videla, Carito Guziolowski, Federica Eduati, Sven Thiele, Niels Grabe, Julio Saez-Rodriguez, Anne Siegel
2012 J jnl
Revisiting the Training of Logic Models of Protein Signaling Networks with a Formal Approach based on Answer Set Programming
CoRR
Santiago Videla, Carito Guziolowski, Federica Eduati, Sven Thiele, Niels Grabe, Julio Saez-Rodriguez, Anne Siegel
2011 J jnl
Designing Logical Rules to Model the Response of Biomolecular Networks with Complex Interactions: An Application to Cancer Modeling.
IEEE ACM Trans. Comput. Biol. Bioinform.
Carito Guziolowski, Sylvain Blachon, Tatiana Baumuratova, Gautier Stoll, Ovidiu Radulescu, Anne Siegel
2010 — —
Analysis of Large-Scale Biological Networks with Constraint-Based Approaches over Static Models.
Carito Guziolowski
2010 A* conf
Repair and Prediction (under Inconsistency) in Large Biological Networks with Answer Set Programming.
KR
Martin Gebser, Carito Guziolowski, Mihail Ivanchev, Torsten Schaub, Anne Siegel, Sven Thiele, Philippe Veber
2009 — conf
Method for Relating Inter-patient Gene Copy Numbers Variations with Gene Expression via Gene Influence Networks.
AIAI (Workshops)
Sylvain Blachon, Gautier Stoll, Carito Guziolowski, Andrei Yu. Zinovyev, Emmanuel Barillot, Anne Siegel, Ovidiu Radulescu
2008 — conf
Curating a Large-Scale Regulatory Network by Evaluating Its Consistency with Expression Datasets.
CIBB
Carito Guziolowski, Jeremy Gruel, Ovidiu Radulescu, Anne Siegel
2008 J jnl
Inferring the role of transcription factors in regulatory networks.
BMC Bioinform.
Philippe Veber, Carito Guziolowski, Michel Le Borgne, Ovidiu Radulescu, Anne Siegel
2007 J jnl
Mapping sequences by parts.
Algorithms Mol. Biol.
Gilles Didier, Carito Guziolowski
2006 J jnl
JUICE: a data management system that facilitates the analysis of large volumes of information in an EST project workflow.
BMC Bioinform.
Mariano Latorre, Herman Silva, Juan Saba, Carito Guziolowski, Paula Vizoso, Veronica Martinez, Jonathan Maldonado, Andrea Morales, Rodrigo Caroca, Veronica Cambiazo, Reinaldo Campos-Vargas, Mauricio Gonzalez, Ariel Orellana, Julio Retamales, Lee A. Meisel