Canan Atilgan

16 papers Journal 16
YearRankTypeTitle / Venue / Authors
2025 J jnl
High Throughput Mutational Scanning of a Protein via Alchemistry on a High-Performance Computing Resource.
Concurr. Comput. Pract. Exp.
Tandac F. Guclu, Busra Tayhan, Ebru Çetin, Ali Rana Atilgan, Canan Atilgan
2025 J jnl
Ranking Single Fluorescent Protein-Based Calcium Biosensor Performance by Molecular Dynamics Simulations.
J. Chem. Inf. Model.
Melike Berksoz, Canan Atilgan
2023 J jnl
Kinetic Barrier to Enzyme Inhibition Is Manipulated by Dynamical Local Interactions in
J. Chem. Inf. Model.
Ebru Çetin, Tandac F. Guclu, Isik Kantarcioglu, Ilona K. Gaszek, Erdal Toprak, Ali Rana Atilgan, Burcu Dedeoglu, Canan Atilgan
2023 J jnl
Nonlocal Effects of Antibiotic-Resistance-Causing Mutations Reveal an Alternative Region for Targeting on FtsW-Penicillin-Binding Protein 3 Complex of
J. Chem. Inf. Model.
Almotasem Belah Alhamwi, Canan Atilgan, Özge Sensoy
2022 J jnl
DHFR Mutants Modulate Their Synchronized Dynamics with the Substrate by Shifting Hydrogen Bond Occupancies.
J. Chem. Inf. Model.
Ebru Çetin, Ali Rana Atilgan, Canan Atilgan
2021 J jnl
Could network structures generated with simple rules imposed on a cubic lattice reproduce the structural descriptors of globular proteins?
J. Complex Networks
Osman Burak Okan, Deniz Turgut, Canan Atilgan, Ali Rana Atilgan, Rahmi Ozisik
2021 J jnl
N-Terminus of the Third PDZ Domain of PSD-95 Orchestrates Allosteric Communication for Selective Ligand Binding.
J. Chem. Inf. Model.
Tandac F. Guclu, Nazli Kocatug, Ali Rana Atilgan, Canan Atilgan
2019 J jnl
Tuning Interaction Parameters of Thermoplastic Polyurethanes in a Binary Solvent To Achieve Precise Control over Microphase Separation.
J. Chem. Inf. Model.
Senem Avaz Seven, Oguzhan Oguz, Yusuf Ziya Menceloglu, Canan Atilgan
2018 J jnl
Allosteric Modulation of Human Hsp90α Conformational Dynamics.
J. Chem. Inf. Model.
David L. Penkler, Canan Atilgan, Özlem Tastan Bishop
2018 J jnl
MODE-TASK: large-scale protein motion tools.
Bioinform.
Caroline J. Ross, Bilal Nizami, Michael Glenister, Olivier Sheik Amamuddy, Ali Rana Atilgan, Canan Atilgan, Özlem Tastan Bishop
2017 J jnl
MD-TASK: a software suite for analyzing molecular dynamics trajectories.
Bioinform.
David K. Brown, David L. Penkler, Olivier Sheik Amamuddy, Caroline J. Ross, Ali Rana Atilgan, Canan Atilgan, Özlem Tastan Bishop
2017 J jnl
Perturbation-Response Scanning Reveals Key Residues for Allosteric Control in Hsp70.
J. Chem. Inf. Model.
David L. Penkler, Özge Sensoy, Canan Atilgan, Özlem Tastan Bishop
2013 J jnl
Designing Molecular Dynamics Simulations to Shift Populations of the Conformational States of Calmodulin.
PLoS Comput. Biol.
Ayse Ozlem Aykut, Ali Rana Atilgan, Canan Atilgan
2010 J jnl
Assortative Mixing in Close-Packed Spatial Networks
CoRR
Deniz Turgut, Ali Rana Atilgan, Canan Atilgan
2009 J jnl
Perturbation-Response Scanning Reveals Ligand Entry-Exit Mechanisms of Ferric Binding Protein.
PLoS Comput. Biol.
Canan Atilgan, Ali Rana Atilgan
2008 J jnl
Collective Behavior of el Farol Attendees.
Adv. Complex Syst.
Canan Atilgan, Ali Rana Atilgan, Güven Demirel