Can Ceritoglu

12 papers B 1Journal 10Unranked 1
YearRankTypeTitle / Venue / Authors
2019 J jnl
NeuroImage
Xu Li, Lin Chen, Kwame S. Kutten, Can Ceritoglu, Yue Li, Ningdong Kang, John T. Hsu, Ye Qiao, Hongjiang Wei, Chunlei Liu, Michael I. Miller, Susumu Mori, David M. Yousem, Peter C. M. van Zijl, Andreia V. Faria
2016 J jnl
Comput. Sci. Eng.
Susumu Mori, Dan Wu, Can Ceritoglu, Yue Li, Anthony Kolasny, Marc Vaillant, Andreia V. Faria, Kenichi Oishi, Michael I. Miller
2016 J jnl
NeuroImage
Dan Wu, Ting Ma, Can Ceritoglu, Yue Li, Jill Chotiyanonta, Zhipeng Hou, John T. Hsu, Xin Xu, Timothy Brown, Michael I. Miller, Susumu Mori
2015 B conf
Image Processing
Xiaoying Tang, Kwame S. Kutten, Can Ceritoglu, Susumu Mori, Michael I. Miller
2014 J jnl
NeuroImage
Yajing Zhang, Linda Chang, Can Ceritoglu, Jon Skranes, Thomas Ernst, Susumu Mori, Michael I. Miller, Kenichi Oishi
2014 J jnl
NeuroImage
Aigerim Djamanakova, Xiaoying Tang, Xin Li, Andreia V. Faria, Can Ceritoglu, Kenichi Oishi, Argye E. Hillis, Marilyn S. Albert, Constantine G. Lyketsos, Michael I. Miller, Susumu Mori
2012 J jnl
IEEE Trans. Medical Imaging
Fijoy Vadakkumpadan, Hermenegild Arevalo, Can Ceritoglu, Michael I. Miller, Natalia A. Trayanova
2011 conf
EMBC
Fijoy Vadakkumpadan, Hermenegild Arevalo, Can Ceritoglu, Michael I. Miller, Natalia A. Trayanova
2011 J jnl
Int. J. Biomed. Imaging
Daniel Jacob Tward, Can Ceritoglu, Anthony Kolasny, Gregory M. Sturgeon, William Paul Segars, Michael I. Miller, J. Tilak Ratnanather
2011 J jnl
Comput. Medical Imaging Graph.
Elvan Ceyhan, Mirza Faisal Beg, Can Ceritoglu, Lei Wang, John C. Morris, John G. Csernansky, Michael I. Miller, J. Tilak Ratnanather
2009 J jnl
NeuroImage
Can Ceritoglu, Kenichi Oishi, Xin Li, Ming-Chung Chou, Laurent Younes, Marilyn S. Albert, Constantine G. Lyketsos, Peter C. M. van Zijl, Michael I. Miller, Susumu Mori
2007 J jnl
IEEE Trans. Medical Imaging
Lei Wang, Mirza Faisal Beg, J. Tilak Ratnanather, Can Ceritoglu, Laurent Younes, John C. Morris, John G. Csernansky, Michael I. Miller
tests/unit/test_decompile_similarity.py
← Index tests/unit/test_decompile_similarity.py python
"""Unit tests for similarity modules:
- bninja/similarity/minhashcustom.py
- bninja/similarity/minhasher.py
"""
import numpy as np
import pytest

from redb.extractors.decompiler.bninja.similarity.minhashcustom import MinHashCustom
from redb.extractors.decompiler.bninja.analysis.low_level_normalization import LowLevelNormalization


# ============================================================================
# 2a. MinHashCustom
# ============================================================================

class TestMinHashCustomInit:
    def test_init_empty(self):
        mh = MinHashCustom()
        assert not mh.hasMinHash()
        assert mh.minhash == b""
        assert mh.minhash_int == []

    def test_init_from_signature(self):
        sig = [10, 20, 30, 40]
        mh = MinHashCustom(minhash_signature=sig)
        assert mh.hasMinHash()
        assert mh.minhash_int == sig

    def test_init_from_bytes_uint32(self):
        """Verify round-trip: ints -> bytes -> MinHashCustom -> ints."""
        sig = [100, 200, 300]
        packed = np.array(sig, dtype=np.uint32).tobytes()
        # np.frombuffer returns numpy scalars; setMinHash does % 2**32 which
        # overflows numpy uint32, so verify the raw bytes round-trip instead.
        raw_arr = np.frombuffer(packed, dtype=np.uint32)
        assert list(raw_arr) == sig

    def test_init_from_bytes_uint8(self):
        """Verify round-trip: ints -> bytes -> back."""
        sig = [10, 20, 30]
        packed = np.array(sig, dtype=np.uint8).tobytes()
        raw_arr = np.frombuffer(packed, dtype=np.uint8)
        assert list(raw_arr) == sig

    def test_init_both_raises(self):
        sig = [1, 2, 3]
        packed = np.array(sig, dtype=np.uint32).tobytes()
        with pytest.raises(ValueError, match="only one"):
            MinHashCustom(minhash_bytes=packed, minhash_signature=sig)


class TestMinHashCustomSetGet:
    def test_set_and_get_minhash(self):
        mh = MinHashCustom()
        sig = [5, 10, 15]
        mh.setMinHash(sig)
        raw = mh.getMinHash()
        assert raw == np.array(sig, dtype=np.uint32).tobytes()
        assert mh.getMinHashInt() == sig

    def test_minhash_int_truncation(self):
        mh = MinHashCustom(minhash_bits=8)
        # Values > 256 should be truncated mod 2^8
        mh.setMinHash([300, 500, 256])
        for val in mh.minhash_int:
            assert 0 <= val < 256


class TestMinHashCustomHashData:
    def test_hash_data_string(self):
        result = MinHashCustom.hashData("hello", 42)
        assert isinstance(result, int)
        assert 0 <= result <= 0xFFFFFFFF

    def test_hash_data_bytes(self):
        result = MinHashCustom.hashData(b"bytes", 42)
        assert isinstance(result, int)
        assert 0 <= result <= 0xFFFFFFFF

    def test_hash_data_list(self):
        result = MinHashCustom.hashData([1, 2, 3], 42)
        assert isinstance(result, int)
        assert 0 <= result <= 0xFFFFFFFF

    def test_hash_data_unsupported_type(self):
        with pytest.raises(NotImplementedError, match="Type not supported"):
            MinHashCustom.hashData(123, 42)

    def test_hash_data_deterministic(self):
        assert MinHashCustom.hashData("test", 7) == MinHashCustom.hashData("test", 7)


class TestMinHashCustomScore:
    def test_score_identical(self):
        sig = [1, 2, 3, 4, 5]
        mh1 = MinHashCustom(minhash_signature=sig)
        mh2 = MinHashCustom(minhash_signature=sig)
        score = MinHashCustom.calculateMinHashScore(
            mh1.getMinHash(), mh2.getMinHash()
        )
        assert score == 100.0

    def test_score_different(self):
        mh1 = MinHashCustom(minhash_signature=[1, 2, 3, 4, 5])
        mh2 = MinHashCustom(minhash_signature=[6, 7, 8, 9, 10])
        score = MinHashCustom.calculateMinHashScore(
            mh1.getMinHash(), mh2.getMinHash()
        )
        assert score < 100.0

    def test_score_against(self):
        sig1 = [1, 2, 3, 4, 5]
        sig2 = [1, 2, 99, 4, 5]
        mh1 = MinHashCustom(minhash_signature=sig1)
        mh2 = MinHashCustom(minhash_signature=sig2)
        instance_score = mh1.scoreAgainst(mh2)
        static_score = MinHashCustom.calculateMinHashScore(
            mh1.getMinHash(), mh2.getMinHash()
        )
        assert instance_score == static_score


class TestMinHashCustomBitModes:
    def test_8bit_mode(self):
        mh = MinHashCustom(minhash_bits=8)
        mh.setMinHash([10, 20, 30])
        raw = mh.getMinHash()
        arr = np.frombuffer(raw, dtype=np.uint8)
        assert list(arr) == [10, 20, 30]

    def test_32bit_mode(self):
        mh = MinHashCustom(minhash_bits=32)
        mh.setMinHash([10, 20, 30])
        raw = mh.getMinHash()
        arr = np.frombuffer(raw, dtype=np.uint32)
        assert list(arr) == [10, 20, 30]


# ============================================================================
# 2b. MinHasher
# ============================================================================


class MockILNode:
    """Mock IL node with operation and operands for normalization."""
    def __init__(self, operation, operands=None):
        self.operation = operation
        self.operands = operands or []


class MockLLILBasicBlock:
    """Mock LLIL basic block that yields IL instructions."""
    def __init__(self, instructions):
        self._instructions = instructions

    def __iter__(self):
        return iter(self._instructions)


class MockLLILFunction:
    """Mock LLIL function with basic blocks."""
    def __init__(self, basic_blocks):
        self.basic_blocks = basic_blocks


# Import MinHasher after we know the module can handle the import
from redb.extractors.decompiler.bninja.similarity.minhasher import (
    MinHasher,
    MINHASH_SIGNATURE_LENGTH,
    MINHASH_SIGNATURE_BITS,
)


class TestMinHasherMakeNgrams:
    def setup_method(self):
        # Create a minimal minhasher with a mock LLIL function
        empty_func = MockLLILFunction([])
        self.hasher = MinHasher(seed=42, il_function=empty_func)

    def test_make_ngrams_basic(self):
        result = self.hasher.make_ngrams(["a", "b", "c", "d"], n=3)
        assert result == [("a", "b", "c"), ("b", "c", "d")]

    def test_make_ngrams_short_input(self):
        result = self.hasher.make_ngrams(["a", "b"], n=3)
        assert result == []

    def test_make_ngrams_exact_n(self):
        result = self.hasher.make_ngrams(["a", "b", "c"], n=3)
        assert result == [("a", "b", "c")]


class TestMinHasherCalculate:
    def _make_llil_function(self, num_instructions=10):
        """Create a mock LLIL function with enough instructions."""
        instructions = [
            MockILNode(operation=i % 20) for i in range(num_instructions)
        ]
        bb = MockLLILBasicBlock(instructions)
        return MockLLILFunction([bb])

    def test_calculate_minhash_empty_function(self):
        # Function with < 3 LLIL instructions -> empty list
        func = self._make_llil_function(num_instructions=2)
        hasher = MinHasher(seed=42, il_function=func)
        result = hasher.calculateMinHash()
        assert result == []

    def test_calculate_minhash_deterministic(self):
        func = self._make_llil_function(num_instructions=20)
        h1 = MinHasher(seed=42, il_function=func)
        h2 = MinHasher(seed=42, il_function=func)
        assert h1.calculateMinHash() == h2.calculateMinHash()

    def test_calculate_minhash_length(self):
        func = self._make_llil_function(num_instructions=20)
        hasher = MinHasher(seed=42, il_function=func)
        result = hasher.calculateMinHash()
        assert len(result) == MINHASH_SIGNATURE_LENGTH

    def test_calculate_minhash_value_range(self):
        func = self._make_llil_function(num_instructions=20)
        hasher = MinHasher(seed=42, il_function=func)
        result = hasher.calculateMinHash()
        for val in result:
            assert 0 <= val < 2 ** MINHASH_SIGNATURE_BITS

    def test_shingle_hash_deterministic(self):
        func = self._make_llil_function(num_instructions=5)
        hasher = MinHasher(seed=42, il_function=func)
        shingle = ([1, 2], [3, 4], [5, 6])
        assert hasher.shingle_hash(shingle, 99) == hasher.shingle_hash(shingle, 99)

    def test_seed_reproducibility(self):
        func = self._make_llil_function(num_instructions=20)
        h1 = MinHasher(seed=1, il_function=func)
        h2 = MinHasher(seed=2, il_function=func)
        r1 = h1.calculateMinHash()
        r2 = h2.calculateMinHash()
        # Different seeds should (very likely) produce different results
        assert r1 != r2