Camille Marchet

20 papers C 3Misc 2Journal 14
YearRankTypeTitle / Venue / Authors
2026 J jnl
Vigemers: on the number of
CoRR
Florian Ingels, Antoine Limasset, Camille Marchet, Mikaël Salson
2025 J jnl
<tt>CREMSA</tt>: compressed indexing of (ultra) large multiple sequence alignments.
Bioinform.
Mikaël Salson, Arthur Boddaert, Awa Bousso Gueye, Laurent Bulteau, Yohan Hernandez-Courbevoie, Camille Marchet, Nan Pan, Sebastian Will, Yann Ponty
2025 J jnl
Fractional hitting sets for efficient multiset sketching.
Algorithms Mol. Biol.
Timothé Rouzé, Igor Martayan, Camille Marchet, Antoine Limasset
2025 C conf
REINDEER2: Practical Abundance Index at Scale.
SPIRE
Yohan Hernandez-Courbevoie, Mikaël Salson, Chloé Bessière, Haoliang Xue, Daniel Gautheret, Camille Marchet, Antoine Limasset
2024 Misc conf
Cdbgtricks: Strategies to update a compacted de Bruijn graph.
PSC
Khodor Hannoush, Camille Marchet, Pierre Peterlongo
2024 J jnl
Conway-Bromage-Lyndon (CBL): an exact, dynamic representation of
Bioinform.
Igor Martayan, Bastien Cazaux, Antoine Limasset, Camille Marchet
2024 J jnl
On the number of
CoRR
Florian Ingels, Camille Marchet, Mikaël Salson
2023 C conf
Fractional Hitting Sets for Efficient and Lightweight Genomic Data Sketching.
WABI
Timothé Rouzé, Igor Martayan, Camille Marchet, Antoine Limasset
2023 J jnl
Scalable sequence database search using partitioned aggregated Bloom comb trees.
Bioinform.
Camille Marchet, Antoine Limasset
2021 J jnl
BLight: efficient exact associative structure for k-mers.
Bioinform.
Camille Marchet, Maël Kerbiriou, Antoine Limasset
2020 J jnl
A resource-frugal probabilistic dictionary and applications in bioinformatics.
Discret. Appl. Math.
Camille Marchet, Lolita Lecompte, Antoine Limasset, Lucie Bittner, Pierre Peterlongo
2020 J jnl
Comparative assessment of long-read error correction software applied to Nanopore RNA-sequencing data.
Briefings Bioinform.
Leandro Lima, Camille Marchet, Ségolène Caboche, Corinne Da Silva, Benjamin Istace, Jean-Marc Aury, Hélène Touzet, Rayan Chikhi
2020 J jnl
REINDEER: efficient indexing of k-mer presence and abundance in sequencing datasets.
Bioinform.
Camille Marchet, Zamin Iqbal, Daniel Gautheret, Mikaël Salson, Rayan Chikhi
2018 — —
From reads to transcripts: de novo methods for the analysis of transcriptome second and third generation sequencing. (Des lectures aux transcrits: méthodes de novo pour l'analyse du séquençage des transcriptomes de deuxième et troisième génération).
Camille Marchet
2017 J jnl
A resource-frugal probabilistic dictionary and applications in bioinformatics.
CoRR
Camille Marchet, Lolita Lecompte, Antoine Limasset, Lucie Bittner, Pierre Peterlongo
2017 J jnl
Playing hide and seek with repeats in local and global de novo transcriptome assembly of short RNA-seq reads.
Algorithms Mol. Biol.
Leandro Lima, Blerina Sinaimeri, Gustavo Sacomoto, Hélène Lopez-Maestre, Camille Marchet, Vincent Miele, Marie-France Sagot, Vincent Lacroix
2016 Misc conf
A Resource-frugal Probabilistic Dictionary and Applications in (Meta)Genomics.
PSC
Camille Marchet, Antoine Limasset, Lucie Bittner, Pierre Peterlongo
2016 J jnl
A resource-frugal probabilistic dictionary and applications in (meta)genomics.
CoRR
Camille Marchet, Antoine Limasset, Lucie Bittner, Pierre Peterlongo
2014 C conf
Navigating in a Sea of Repeats in RNA-seq without Drowning.
WABI
Gustavo Sacomoto, Blerina Sinaimeri, Camille Marchet, Vincent Miele, Marie-France Sagot, Vincent Lacroix
2014 J jnl
Navigating in a sea of repeats in RNA-seq without drowning.
CoRR
Gustavo Sacomoto, Blerina Sinaimeri, Camille Marchet, Vincent Miele, Marie-France Sagot, Vincent Lacroix