Calum MacAulay

22 papers B 1Journal 10Unranked 10
YearRankTypeTitle / Venue / Authors
2023 conf
MICCAI (6)
Puria Azadi, Jonathan Suderman, Ramin Nakhli, Katherine Rich, Maryam Asadi, Sonia Kung, Htoo Oo, Mira Keyes, Hossein Farahani, Calum MacAulay, Larry Goldenberg, Peter Black, Ali Bashashati
2022 conf
Digital and Computational Pathology
Kouther Noureddine, Paul Gallagher, Griffin Thomas, Sylvia Lam, Gavin MacAulay, Anna McGuire, John English, Martial Guillaud, Calum MacAulay
2022 J jnl
CoRR
Fereshteh Yousefirizi, Ian Janzen, Natalia Dubljevic, Yueh-En Liu, Chloe Hill, Calum MacAulay, Arman Rahmim
2022 J jnl
CoRR
Arman Rahmim, Amirhosein Toosi, Mohammad R. Salmanpour, Natalia Dubljevic, Ian Janzen, Isaac Shiri, Mohamad A. Ramezani, Ren Yuan, Cheryl Ho, Habib Zaidi, Calum MacAulay, Carlos F. Uribe, Fereshteh Yousefirizi
2021 conf
HECKTOR@MICCAI
Fereshteh Yousefirizi, Ian Janzen, Natalia Dubljevic, Yueh-En Liu, Chloe Hill, Calum MacAulay, Arman Rahmim
2020 ch.
AI and ML for Digital Pathology
Soufiane El Hallani, Calum MacAulay, Martial Guillaud
2018 conf
MIUA
Elham Abouei, Anthony M. D. Lee, Geoffrey Hohert, Pierre Lane, Stephen Lam, Calum MacAulay
2017 conf
ISBI
Nilgoon Zarei, Amir Bakhtiari, Paul Gallagher, Mira Keys, Calum MacAulay
2017 conf
BIOIMAGING
Nilgoon Zarei, Dennis D. Cox, Pierre Lane, Scott B. Cantor, E. Neely Atkinson, Jose-Miguel Yamal, Leonid Fradkin, Daniel Serachitopol, Sylvia Lam, Dirk Niekerk, Dianne Miller, Jessica McAlpine, Kayla Castaneda, Felipe Castaneda, Michele Follen, Calum MacAulay
2016 conf
Digital Pathology
Fahime Sheikhzadeh, Anita Carraro, Jagoda Korbelik, Calum MacAulay, Martial Guillaud, Rabab K. Ward
2015 conf
Digital Pathology
Fahime Sheikhzadeh, Rabab K. Ward, Anita Carraro, Zhaoyang Chen, Dirk van Niekerk, Calum MacAulay, Michele Follen, Pierre Lane, Martial Guillaud
2015 J jnl
Stat. Anal. Data Min.
Jose-Miguel Yamal, Martial Guillaud, E. Neely Atkinson, Michele Follen, Calum MacAulay, Scott B. Cantor, Dennis D. Cox
2012 conf
ISBI
Mehrnoush Khojasteh, Rabab Kreidieh Ward, Calum MacAulay
2010 J jnl
Biosyst.
Martial Guillaud, Carole Clem, Calum MacAulay
2008 J jnl
BMC Bioinform.
Bryan Chi, Ronald J. deLeeuw, Bradley P. Coe, Raymond T. Ng, Calum MacAulay, Wan L. Lam
2008 J jnl
BMC Bioinform.
Raj Chari, Bradley P. Coe, Craig Wedseltoft, Marie Benetti, Ian M. Wilson, Emily A. Vucic, Calum MacAulay, Raymond T. Ng, Wan L. Lam
2006 conf
ICASSP (2)
Mehrnoush Khojasteh, Bradley P. Coe, Sohrab P. Shah, Rabab K. Ward, Wan L. Lam, Calum MacAulay
2005 J jnl
Comput. Methods Programs Biomed.
R. Kamalov, Martial Guillaud, D. Haskins, A. Harrison, Roger Kemp, D. Chiu, Michele Follen, Calum MacAulay
2005 J jnl
BMC Bioinform.
Mehrnoush Khojasteh, Wan L. Lam, Rabab Kreidieh Ward, Calum MacAulay
2005 B conf
Image Processing
Ravil Chamgoulov, Michael Tsiroulnikov, Pierre Lane, Calum MacAulay
2004 J jnl
BMC Bioinform.
Bryan Chi, Ronald J. deLeeuw, Bradley P. Coe, Calum MacAulay, Wan L. Lam
2002 J jnl
IEEE Trans. Biomed. Eng.
Sung K. Chang, Michele Follen, Anais Malpica, Urs Utzinger, Gregg Staerkel, Dennis D. Cox, E. Neely Atkinson, Calum MacAulay, Rebecca R. Richards-Kortum
redb/extractors/pe_extractors/pe_resources.py
← Index redb/extractors/pe_extractors/pe_resources.py python
from hashlib import sha256
import inspect
from datetime import datetime, timezone
from typing import Any

import magic
from magika import Magika
import pefile
from pefile import UnicodeStringWrapperPostProcessor

from redb.extractors.enum import Tag
from redb.extractors.pe_extractor import PEExtractor
from redb.models.dataclasses import PEResource


class PEResourceExtractor(PEExtractor):

    def __init__(
        self,
        filepath,
        log,
        exporters=None,
        index_prefix=None,
        elastic_index=None,
        known_benign=False,
        known_malicious=False,
        pe=None,
    ):
        super().__init__(
            filepath,
            log,
            exporters,
            index_prefix,
            elastic_index,
            known_benign,
            known_malicious,
            pe,
        )
        self.elastic_index = self.index_prefix + "-pe_resources"
        self.log.debug(inspect.currentframe().f_code.co_name)

    def tag(self):
        return Tag.PE_RESOURCE.value

    def _extract_resources(self):
        """
        Returns:
        resources: a list of dictionaries, one per each resources type found.
                    each dictionary the key represents the name of the content,
                    which is the value itself.
                    Empty list if no resources present.
        """
        self.log.debug(inspect.currentframe().f_code.co_name)
        resources_list = []
        try:
            if hasattr(self.pe, "DIRECTORY_ENTRY_RESOURCE"):
                for resource_type in self.pe.DIRECTORY_ENTRY_RESOURCE.entries:
                    # if resource_type.name is not None:
                    #     name = resource_type.name
                    # else:
                    #     name = pefile.RESOURCE_TYPE.get(resource_type.struct.Id)
                    # if not name:
                    #     name = resource_type.struct.Id
                    name = (
                        resource_type.name
                        if resource_type.name is not None
                        else pefile.RESOURCE_TYPE.get(resource_type.struct.Id)
                    )
                    if isinstance(name, UnicodeStringWrapperPostProcessor):
                        name = name.decode()
                    try:
                        if hasattr(resource_type, "directory"):
                            for resource_id in resource_type.directory.entries:
                                if hasattr(resource_id, "directory"):
                                    for resource_lang in resource_id.directory.entries:
                                        rsrc_data = self.pe.get_data(
                                            resource_lang.data.struct.OffsetToData,
                                            resource_lang.data.struct.Size,
                                        )
                                        file_type = magic.from_buffer(rsrc_data)
                                        magik = Magika().identify_bytes(rsrc_data).output.label

                                        rsrc_entropy = (
                                            "%.2f"
                                            % pefile.SectionStructure.entropy_H(
                                                self.pe, rsrc_data
                                            )
                                        )
                                        rsrc_sha256 = sha256(rsrc_data).hexdigest()
                                        lang = pefile.LANG.get(
                                            resource_lang.data.lang, "*unknown*"
                                        )
                                        sublang = pefile.get_sublang_name_for_lang(
                                            resource_lang.data.lang,
                                            resource_lang.data.sublang,
                                        )
                                        pe_resource = PEResource(
                                            _id=rsrc_sha256,
                                            resource_type=name,
                                            resource_entropy=rsrc_entropy,
                                            resource_sha256=rsrc_sha256,
                                            resource_filetype=file_type,
                                            resource_magika=magik,
                                            resource_language=lang,
                                            resource_rva=resource_lang.data.struct.OffsetToData,
                                            resource_size=resource_lang.data.struct.Size,
                                            resource_sub_lang=sublang,
                                        )
                                        resources_list.append(pe_resource)
                    except Exception as e:
                        self.log.warning(
                            f"Continue after Error in {self.hash.sha256}: {resource_type.name} "
                            f"Exception: {e}",
                            stack_info=True,
                        )
                        # resources_list.append({f"{e} - {resource_type.name}"})
                        continue
        except Exception as e:
            self.log.exception(
                f"Extract exports error {self.hash.sha256} Exception: {e}"
            )
        self.log.debug(f"Resource list {resources_list}")
        return resources_list

    def extract(self):
        try:
            self.log.debug(inspect.currentframe().f_code.co_name)
            resources = self._extract_resources()
            # self.export_to_elastic(resources)  # Let the exporters handle this
            return resources
        except Exception as e:
            self.log.error(f"Extract resources error {self.hash.sha256} Exception: {e}")
            return None

    def prepare_export_data(self, exporter_type: str) -> Any:
        if exporter_type == "ElasticsearchExporter":
            return self.extract()
        elif exporter_type == "ClickHouseExporter":
            resources = self.extract()
            if resources is None:
                return None
            
            data = []
            current_time = datetime.now(timezone.utc)
            
            for resource in resources:
                data.append([
                    self.sha256,                    # sha256
                    self.md5,                       # md5
                    self.sha1,                      # sha1
                    resource.resource_type,         # resource_type
                    resource.resource_entropy,      # resource_entropy
                    resource.resource_sha256,       # resource_sha256
                    resource.resource_filetype,     # resource_filetype
                    resource.resource_magika,       # resource_magika
                    resource.resource_language,     # resource_language
                    resource.resource_sub_lang,     # resource_sub_lang
                    resource.resource_size,         # resource_size
                    resource.resource_rva,          # resource_rva
                    current_time                    # analysis_date
                ])
            
            column_names = [
                'sha256', 'md5', 'sha1', 'resource_type', 'resource_entropy',
                'resource_sha256', 'resource_filetype', 'resource_magika',
                'resource_language', 'resource_sub_lang', 'resource_size',
                'resource_rva', 'analysis_date'
            ]
            
            if not data:
                return None

            column_type_names = [
                'FixedString(64)', 'FixedString(32)', 'FixedString(40)',
                'LowCardinality(Nullable(String))', 'Float64',
                'FixedString(64)', 'LowCardinality(Nullable(String))', 'LowCardinality(Nullable(String))',
                'LowCardinality(Nullable(String))', 'LowCardinality(Nullable(String))', 'UInt64',
                'UInt64', 'DateTime64(3, \'UTC\')'
            ]

            return (data, column_names, column_type_names)

    def get_clickhouse_table(self) -> str:
        return "redb_pe_resources"