Buyong Ma

12 papers Journal 11Unranked 1
YearRankTypeTitle / Venue / Authors
2025 J jnl
GATRsite: RNA-Ligand Binding Site Prediction Using Graph Attention Networks and Pretrained RNA Language Models.
J. Chem. Inf. Model.
Chuance Sun, Linghao Zhang, Lingfeng Zhang, Yuehua Song, Buyong Ma, Yanjing Wang
2025 J jnl
SageTCR: a structure-based model integrating residue- and atom-level representations for enhanced TCR-pMHC binding prediction.
Briefings Bioinform.
Xiangyi Li, Chuance Sun, Weiran Huang, Yanjing Wang, Buyong Ma
2024 J jnl
REMD simulations of conformational dynamics of disordered nuclear localization signal peptide of p53 protein.
Commun. Inf. Syst.
Linghao Zhang, Ganggang Bai, Honglin Xu, Jingjing Li, Buyong Ma
2021 — conf
Antigen Binding Reshapes Antibody Energy Landscape and Conformation Dynamics.
BIBM
Kazi Lutful Kabir, Ruth Nussinov, Buyong Ma, Amarda Shehu
2016 J jnl
Principles and Overview of Sampling Methods for Modeling Macromolecular Structure and Dynamics.
PLoS Comput. Biol.
Tatiana Maximova, Ryan Moffatt, Buyong Ma, Ruth Nussinov, Amarda Shehu
2015 J jnl
Coupling of Zinc-Binding and Secondary Structure in Nonfibrillar Aβ40 Peptide Oligomerization.
J. Chem. Inf. Model.
Liang Xu, Shengsheng Shan, Yonggang Chen, Xiaojuan Wang, Ruth Nussinov, Buyong Ma
2015 J jnl
Defining the Domain Arrangement of the Mammalian Target of Rapamycin Complex Component Rictor Protein.
J. Comput. Biol.
Ping Zhou, Ning Zhang, Ruth Nussinov, Buyong Ma
2015 J jnl
Mapping the Conformation Space of Wildtype and Mutant H-Ras with a Memetic, Cellular, and Multiscale Evolutionary Algorithm.
PLoS Comput. Biol.
Rudy Clausen, Buyong Ma, Ruth Nussinov, Amarda Shehu
2007 J jnl
Ligand Binding and Circular Permutation Modify Residue Interaction Network in DHFR.
PLoS Comput. Biol.
Zengjian Hu, Donnell Bowen, William M. Southerland, Antonio del Sol, Yongping Pan, Ruth Nussinov, Buyong Ma
2001 J jnl
A hierarchical, building-block-based computational scheme for protein structure prediction.
IBM J. Res. Dev.
Chung-Jung Tsai, Buyong Ma, Yuk Yin Sham, Sandeep Kumar, Haim J. Wolfson, Ruth Nussinov
2000 J jnl
Molecular polarizabilities and induced dipole moments in molecular mechanics.
J. Comput. Chem.
Buyong Ma, Jenn-Huei Lii, Norman L. Allinger
1999 J jnl
Importance of selecting proper basis set in quantum mechanical studies of potential energy surfaces of carbohydrates.
J. Comput. Chem.
Jenn-Huei Lii, Buyong Ma, Norman L. Allinger